Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007067

Physical Location & Seq

Genomic Coordinates Forward (+)

49557205 .. 49557975

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0383500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAGAAGAAGGGGAATCATGGTGATGGTCACCTCCTCCCTGATGATATTATTGTGGAAATTTTAATACATGTGCCCGTCAAAACTTTGATTATTTGCAGCAGCGTTTCAAGAGGGTGGCGACATTTAATATATGGCCCTCAGTTCTCCAAAACCCACTTCAAATTAGCATCTGAGCAGAAAACCCTTGGTCAGACCCTCCTTCTCTCCACTGGCTTGGTAACTCAATCCTTTGAGGTCTTGGAAACCAACTTGCTGTCTAGGGTCAAAAATCTTACCTTCCCATTCAAGCAAAAAGACCAGGAGGCTATACAACTTATTGGACCATGCAATGGTTTGGTATGTGCAGGTCAATGGTCGTTTTCTAATAAAATTTATAGAAGTTTCTCTATCTGGAACCCGTCTACTGGATTTTTCAGCAATTTACCAGAACACCCGGTTCGGGGATCAGAGGGAGCTAGGAATAAAGGGACGACTTATGAACAATATGGTTTTGGTTATGTTTCGTCAATCGATGGTTACAAAGTTGTTATCATACGTTTTGTTGATGCGATTGCATCTACTGTTTCTTCTGACAAGCTTTCACGCAAGGCAGCGATCTTCTCAGTGAGAAACAACTTTTGGAAGACTATCGAAGCCCCTCCTCACCTGCAATACTTGCGGCAGAACTCGGGAGCTCTTTTAAATGAAACACTCCATTGGGTCGACATGAACCTTAATGATACAACTACTATCACAGCTTTTGATTTGGCAAAGGAAGAATTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

256

Amino Acids

28.81

Weight (kDa)

9.18

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 49	5.9e-09	F-box domain
F-box-like	PF12937	13 - 50	1e-06	F-box-like
FBA_1	PF07734	84 - 255	5.4e-13	F-box associated beta propeller domain
FBA_3	PF08268	88 - 255	9.4e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51460 AT5G51460 AT5G51460 AT5G51460 AT5G51460
fragaria_vesca	FvH4_7g27620
malus_domestica	MD11G1196000.v1.1
prunus_persica	Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1
pyrus_communis	pycom01g19400 pycom07g22750
rosa_chinensis	RchiOBHm_Chr1g0374491
rosa_laevigata	RLG00000026734
rosa_multiflora	Rmu_co8404293.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283450
rosa_rugosa	Rorug01G0383400 Rorug01G0383500 Rorug01G0383600
rosa_samantha	Rh1AG394300 Rh1BG358900 Rh1CG372000 Rh1DG389500
rosa_wichuraiana	Rw1G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	657
Acc36I	ACCTGC	2 cut(s)	338, 657
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccI	GTMKAC	2 cut(s)	404, 705
AciI	CCGC	1 cut(s)	661
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	3 cut(s)	60, 372, 761
AfiI	CCNNNNNNNGG	4 cut(s)	332, 407, 442, 443
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	111, 163, 289
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	4 cut(s)	143, 175, 604, 636
AluBI	AGCT	4 cut(s)	458, 580, 677, 740
AluI	AGCT	4 cut(s)	458, 580, 677, 740
Alw21I	GWGCWC	1 cut(s)	679
AlwI	GGATC	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	670
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	99, 102, 593
ApoI	RAATTY	3 cut(s)	60, 372, 761
AspS9I	GGNCC	2 cut(s)	137, 323
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	23, 35, 638
AvaI	CYCGRG	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	3 cut(s)	111, 114, 605
BccI	CCATC	2 cut(s)	20, 509
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	437
BfaI	CTAG	2 cut(s)	261, 459
BfuAI	ACCTGC	2 cut(s)	338, 657
BisI	GCNGC	4 cut(s)	100, 103, 594, 662
BlsI	GCNGC	4 cut(s)	101, 104, 595, 663
Bme1390I	CCNGG	2 cut(s)	302, 437
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	670
BmgT120I	GGNCC	2 cut(s)	137, 323
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	2 cut(s)	302, 437
BmsI	GCATC	3 cut(s)	179, 538, 566
BpiI	GAAGAC	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	765
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 407, 442, 443
Bse1I	ACTGG	2 cut(s)	217, 412
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	4 cut(s)	332, 407, 442, 443
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	3 cut(s)	155, 165, 618
BseNI	ACTGG	2 cut(s)	217, 412
BseRI	GAGGAG	2 cut(s)	26, 633
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	111, 114, 605
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	437, 766
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	4 cut(s)	332, 407, 442, 443
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	670
Bsp1286I	GDGCHC	2 cut(s)	78, 679
Bsp143I	GATC	2 cut(s)	446, 597
BspACI	CCGC	1 cut(s)	661
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	3 cut(s)	154, 166, 617
BspDI	ATCGAT	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	398
BspMI	ACCTGC	2 cut(s)	338, 657
BspPI	GGATC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	217, 412
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	446, 597
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstDEI	CTNAG	3 cut(s)	141, 174, 604
BstEII	GGTNACC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	449, 600
BstMBI	GATC	2 cut(s)	446, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	300, 435
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	111, 114, 605
BstV2I	GAAGAC	1 cut(s)	632
BstXI	CCANNNNNNTGG	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	210, 612
BveI	ACCTGC	2 cut(s)	338, 657
Cfr13I	GGNCC	2 cut(s)	137, 323
ClaI	ATCGAT	1 cut(s)	513
CviAII	CATG	4 cut(s)	20, 71, 327, 709
CviJI	RGCY	8 cut(s)	138, 216, 308, 458, 580, 638, 677, 740
CviKI_1	RGCY	8 cut(s)	138, 216, 308, 458, 580, 638, 677, 740
DdeI	CTNAG	3 cut(s)	141, 174, 604
DpnI	GATC	2 cut(s)	448, 599
DpnII	GATC	2 cut(s)	446, 597
DraI	TTTAAA	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	670
Eco91I	GGTNACC	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	677
EcoO65I	GGTNACC	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	4 cut(s)	23, 74, 330, 712
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	4 cut(s)	19, 70, 326, 708
FblI	GTMKAC	2 cut(s)	404, 705
Fnu4HI	GCNGC	4 cut(s)	100, 103, 594, 662
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	4 cut(s)	100, 103, 594, 662
FspBI	CTAG	2 cut(s)	261, 459
GluI	GCNGC	4 cut(s)	100, 103, 594, 662
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	437, 766
Hin1II	CATG	4 cut(s)	23, 74, 330, 712
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	437, 766
HphI	GGTGA	3 cut(s)	23, 35, 638
Hpy166II	GTNNAC	2 cut(s)	405, 706
Hpy188I	TCNGA	4 cut(s)	175, 195, 451, 574
Hpy188III	TCNNGA	3 cut(s)	111, 394, 672
Hpy8I	GTNNAC	2 cut(s)	405, 706
HpyAV	CCTTC	3 cut(s)	4, 212, 289
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	5 cut(s)	99, 330, 347, 557, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpyF3I	CTNAG	3 cut(s)	141, 174, 604
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	4 cut(s)	23, 74, 330, 712
Kzo9I	GATC	2 cut(s)	446, 597
LmnI	GCTCC	2 cut(s)	455, 674
Lsp1109I	GCAGC	3 cut(s)	111, 114, 605
LweI	GCATC	3 cut(s)	179, 538, 566
MaeI	CTAG	2 cut(s)	261, 459
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	3 cut(s)	29, 220, 518
MalI	GATC	2 cut(s)	448, 599
MboI	GATC	2 cut(s)	446, 597
MboII	GAAGA	6 cut(s)	16, 19, 561, 592, 637, 770
MhlI	GDGCHC	2 cut(s)	78, 679
MluCI	AATT	5 cut(s)	60, 164, 372, 421, 761
MseI	TTAA	4 cut(s)	65, 128, 683, 717
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	2 cut(s)	437, 766
MspR9I	CCNGG	2 cut(s)	302, 437
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	658
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	2 cut(s)	446, 597
NlaIII	CATG	4 cut(s)	23, 74, 330, 712
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	74
PaqCI	CACCTGC	1 cut(s)	657
PciI	ACATGT	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	101, 104, 595, 663
PscI	ACATGT	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	300
PspEI	GGTNACC	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	137, 323
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	679
SalI	GTCGAC	1 cut(s)	704
SaqAI	TTAA	4 cut(s)	65, 128, 683, 717
SatI	GCNGC	4 cut(s)	100, 103, 594, 662
Sau3AI	GATC	2 cut(s)	446, 597
Sau96I	GGNCC	2 cut(s)	137, 323
ScrFI	CCNGG	2 cut(s)	302, 437
SduI	GDGCHC	2 cut(s)	78, 679
SfaNI	GCATC	3 cut(s)	179, 538, 566
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	5 cut(s)	60, 164, 372, 421, 761
SsiI	CCGC	1 cut(s)	661
SspMI	CTAG	2 cut(s)	261, 459
SstI	GAGCTC	1 cut(s)	679
StyD4I	CCNGG	2 cut(s)	300, 435
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	3 cut(s)	513, 633, 705
TasI	AATT	5 cut(s)	60, 164, 372, 421, 761
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	4 cut(s)	65, 128, 683, 717
Tru9I	TTAA	4 cut(s)	65, 128, 683, 717
TscAI	CASTG	2 cut(s)	217, 612
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	3 cut(s)	99, 102, 593
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	4 cut(s)	17, 495, 702, 725
TspRI	CASTG	2 cut(s)	217, 612
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	3 cut(s)	60, 372, 761
XceI	RCATGY	1 cut(s)	74
XmiI	GTMKAC	2 cut(s)	404, 705
XspI	CTAG	2 cut(s)	261, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.