Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007067

Physical Location & Seq

Genomic Coordinates Forward (+)

23956481 .. 23958605

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22750.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGACCTGAAATCAAATCATGCTTCTCCCGTTCTTGCTGATCCTCCACCCTTGAGCAAGTCAAGACTTGGTGGCGTCCATACCAGCCTGTTACCGTATTCAACTCCAGGAGCAGCTTTCCCTGGAGGTCTATACCTAACAATCCCTAGGAAAAAGAATGCATTACTTGATGACGTTCGCTCTAGCTCTTGGCTCGATGCCATGAAAGCTTCATCGCCTCCTCACAGAAAGATAACGAAGGATGTTAACAATGAGTCTGGGGCAACAGATGCTGATATATCTTATCACACATGGATGGTCAAGTATCCATCCGCACTTACATCTTTTGAGCAAATCTCTAATTATGCCAAAGGCAAGAGAATAGCATTGTTTCTTGATTATGACGGGACTCTTTCACCAATTGTAGATAACCCTGACTGTGCCTTTATGTCTGATGCCATGCGTGCATCCGTAAGAAAGGTAGCAAAACATTTCCCAACAGCAATTATCAGTGGAAGAAGCCATGACAAGGTATACGAGTTTGTAAAACTAAATGAACTCTATTATGCGGGTAGTCATGGGATGGACATAATGGCCCCGGTTATACAAAGTATAAACGATGACCAGAGAAACTGTTTTAAGTCAACTGACAAAAAGGGTAAGGCGGTTAATTTGTTCCAGCCTGCAGCTGAATTTTTACCGACGATTAGAGAGGTATTTAAATTGCTCGTTGAAAGTACGAAAGACATTGAAGGAGCTATAGTTGAGGATAATAAGTTCTGTGTCTCTGTACATTACCGCAATGTAGATGAGAAGAGTTGGCCTGCGGTTCTGCAATGTGTCCATGAAATTCTTAAAGACTACCCTCGTTTGCGCTTGACTCATGGGCGAAAGGTTTTAGAGGTTCGACCTACAATAAACTGGGATAAAGGGAAGGCCGTCACGTTTTTACTCGAATCTCTTGGACTAAGTAATTGCGAAGATGTTCTTCCAATATATATTGGCGACGACCGCACAGATGAAGATGCATTCAAGGTCTTGAGGGAAGGAAACCAAGGTTACGGCATTTTAGTCTCGGCCGAGCCCAAGGACAGCAATGCATTTTACTCTCTCCGGGATCCCTCGGAGGTAATGGAGTTTCTTAAGTCACTGGTTATATGGAGGAAGTCAAGTGCCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

387

Amino Acids

43.1

Weight (kDa)

7.14

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51460 AT5G51460 AT5G51460 AT5G51460 AT5G51460
fragaria_vesca	FvH4_7g27620
malus_domestica	MD11G1196000.v1.1
prunus_persica	Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1
pyrus_communis	pycom01g19400 pycom07g22750
rosa_chinensis	RchiOBHm_Chr1g0374491
rosa_laevigata	RLG00000026734
rosa_multiflora	Rmu_co8404293.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283450
rosa_rugosa	Rorug01G0383400 Rorug01G0383500 Rorug01G0383600
rosa_samantha	Rh1AG394300 Rh1BG358900 Rh1CG372000 Rh1DG389500
rosa_wichuraiana	Rw1G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	513
AciI	CCGC	6 cut(s)	312, 548, 644, 778, 806, 991
AclWI	GGATC	3 cut(s)	35, 1091, 1104
AcoI	YGGCCR	1 cut(s)	1056
AcsI	RAATTY	2 cut(s)	671, 828
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	718, 771
AfiI	CCNNNNNNNGG	1 cut(s)	508
AflII	CTTAAG	1 cut(s)	1121
AgsI	TTSAA	4 cut(s)	102, 713, 731, 1012
AjnI	CCWGG	2 cut(s)	106, 121
AloI	GAACNNNNNNTCC	2 cut(s)	740, 772
AluBI	AGCT	5 cut(s)	116, 186, 209, 668, 737
AluI	AGCT	5 cut(s)	116, 186, 209, 668, 737
Alw26I	GTCTC	2 cut(s)	769, 1057
AlwI	GGATC	3 cut(s)	35, 1091, 1104
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	4 cut(s)	573, 800, 915, 1056
ApeKI	GCWGC	2 cut(s)	113, 665
ApoI	RAATTY	2 cut(s)	671, 828
Asp700I	GAANNNNTTC	1 cut(s)	963
AspA2I	CCTAGG	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	855
AspS9I	GGNCC	2 cut(s)	4, 574
AsuC2I	CCSGG	2 cut(s)	578, 1094
AsuHPI	GGTGA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	1156
BamHI	GGATCC	1 cut(s)	1096
BanII	GRGCYC	1 cut(s)	1065
BbvI	GCAGC	2 cut(s)	125, 677
BccI	CCATC	3 cut(s)	289, 316, 556
BceAI	ACGGC	2 cut(s)	902, 1057
BciT130I	CCWGG	2 cut(s)	108, 123
BciVI	GTATCC	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	578, 1094
BcoDI	GTCTC	2 cut(s)	769, 1057
BfaI	CTAG	2 cut(s)	147, 183
BfmI	CTRYAG	2 cut(s)	663, 738
BfrI	CTTAAG	1 cut(s)	1121
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	2 cut(s)	114, 666
BlnI	CCTAGG	1 cut(s)	146
BlsI	GCNGC	2 cut(s)	115, 667
Bme1390I	CCNGG	4 cut(s)	108, 123, 578, 1094
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 574
BmiI	GGNNCC	2 cut(s)	576, 1098
BmrFI	CCNGG	4 cut(s)	108, 123, 578, 1094
BmrI	ACTGGG	1 cut(s)	910
BmsI	GCATC	5 cut(s)	187, 259, 424, 455, 994
BmuI	ACTGGG	1 cut(s)	910
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	2 cut(s)	90, 144
BpuEI	CTTGAG	2 cut(s)	73, 1039
BpuMI	CCSGG	2 cut(s)	578, 1094
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	6 cut(s)	121, 146, 576, 1033, 1065, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	905, 1134
Bse3DI	GCAATG	3 cut(s)	787, 821, 1081
BseBI	CCWGG	2 cut(s)	108, 123
BseDI	CCNNGG	6 cut(s)	121, 146, 576, 1033, 1065, 1101
BseGI	GGATG	5 cut(s)	247, 300, 308, 446, 567
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	3 cut(s)	787, 821, 1081
BseNI	ACTGG	2 cut(s)	905, 1134
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	1156
BseX3I	CGGCCG	1 cut(s)	1056
BseXI	GCAGC	2 cut(s)	125, 677
Bsh1285I	CGRYCG	2 cut(s)	991, 1059
BshFI	GGCC	4 cut(s)	575, 802, 917, 1058
BsiEI	CGRYCG	2 cut(s)	991, 1059
BsiSI	CCGG	2 cut(s)	578, 1093
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	769, 1057
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	2 cut(s)	163, 1007
BsnI	GGCC	4 cut(s)	575, 802, 917, 1058
Bsp1286I	GDGCHC	2 cut(s)	1065, 1156
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	2 cut(s)	40, 1096
BspACI	CCGC	6 cut(s)	312, 548, 644, 778, 806, 991
BspANI	GGCC	4 cut(s)	575, 802, 917, 1058
BspLI	GGNNCC	2 cut(s)	576, 1098
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	3 cut(s)	35, 1091, 1104
BspTI	CTTAAG	1 cut(s)	1121
BsrDI	GCAATG	3 cut(s)	787, 821, 1081
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	905, 1134
BssECI	CCNNGG	6 cut(s)	121, 146, 576, 1033, 1065, 1101
BssMI	GATC	2 cut(s)	40, 1096
BssNAI	GTATAC	1 cut(s)	514
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	3 cut(s)	146, 1033, 1065
Bst1107I	GTATAC	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	108, 123
Bst4CI	ACNGT	3 cut(s)	96, 419, 614
Bst6I	CTCTTC	1 cut(s)	788
BstACI	GRCGYC	1 cut(s)	75
BstAFI	CTTAAG	1 cut(s)	1121
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	769
BstC8I	GCNNGC	3 cut(s)	444, 663, 804
BstDEI	CTNAG	1 cut(s)	947
BstF5I	GGATG	5 cut(s)	247, 300, 308, 446, 567
BstHHI	GCGC	1 cut(s)	855
BstKTI	GATC	2 cut(s)	43, 1099
BstMAI	GTCTC	2 cut(s)	769, 1057
BstMBI	GATC	2 cut(s)	40, 1096
BstMCI	CGRYCG	2 cut(s)	991, 1059
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 269, 443, 990
BstNI	CCWGG	2 cut(s)	108, 123
BstSCI	CCNGG	4 cut(s)	106, 121, 576, 1092
BstSFI	CTRYAG	2 cut(s)	663, 738
BstSLI	GKGCMC	1 cut(s)	1156
BstV1I	GCAGC	2 cut(s)	125, 677
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
BstZ17I	GTATAC	1 cut(s)	514
BstZI	CGGCCG	1 cut(s)	1056
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	4 cut(s)	575, 802, 917, 1058
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	5 cut(s)	247, 300, 308, 446, 567
BtsIMutI	CAGTG	2 cut(s)	496, 1127
Cac8I	GCNNGC	3 cut(s)	444, 663, 804
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	855
Cfr13I	GGNCC	2 cut(s)	4, 574
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	717, 770
CviAII	CATG	8 cut(s)	20, 202, 291, 439, 503, 557, 824, 863
CviQI	GTAC	2 cut(s)	717, 770
DdeI	CTNAG	1 cut(s)	947
DpnI	GATC	2 cut(s)	42, 1098
DpnII	GATC	2 cut(s)	40, 1096
DraI	TTTAAA	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	1056
EagI	CGGCCG	1 cut(s)	1056
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
EclXI	CGGCCG	1 cut(s)	1056
Eco130I	CCWWGG	3 cut(s)	146, 1033, 1065
Eco24I	GRGCYC	1 cut(s)	1065
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	1056
EcoRII	CCWGG	2 cut(s)	106, 121
EcoT14I	CCWWGG	3 cut(s)	146, 1033, 1065
EcoT22I	ATGCAT	3 cut(s)	163, 1009, 1081
EcoT38I	GRGCYC	1 cut(s)	1065
ErhI	CCWWGG	3 cut(s)	146, 1033, 1065
FaeI	CATG	8 cut(s)	23, 205, 294, 442, 506, 560, 827, 866
FalI	AAGNNNNNCTT	2 cut(s)	951, 983
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	8 cut(s)	19, 201, 290, 438, 502, 556, 823, 862
FauI	CCCGC	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	2 cut(s)	114, 666
FokI	GGATG	5 cut(s)	254, 295, 307, 433, 574
FriOI	GRGCYC	1 cut(s)	1065
Fsp4HI	GCNGC	2 cut(s)	114, 666
FspBI	CTAG	2 cut(s)	147, 183
GlaI	GCGC	1 cut(s)	854
GluI	GCNGC	2 cut(s)	114, 666
GsuI	CTGGAG	2 cut(s)	90, 144
HaeIII	GGCC	4 cut(s)	575, 802, 917, 1058
HapII	CCGG	2 cut(s)	578, 1093
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	855
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	8 cut(s)	23, 205, 294, 442, 506, 560, 827, 866
Hin6I	GCGC	1 cut(s)	853
HinP1I	GCGC	1 cut(s)	853
HincII	GTYRAC	2 cut(s)	247, 624
HindII	GTYRAC	2 cut(s)	247, 624
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	4 cut(s)	254, 388, 859, 935
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	578, 1093
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	3 cut(s)	247, 514, 624
Hpy188I	TCNGA	2 cut(s)	433, 1105
Hpy188III	TCNNGA	3 cut(s)	63, 374, 1018
Hpy8I	GTNNAC	3 cut(s)	247, 514, 624
Hpy99I	CGWCG	2 cut(s)	685, 989
HpyAV	CCTTC	4 cut(s)	232, 725, 907, 1019
HpyCH4III	ACNGT	3 cut(s)	96, 419, 614
HpyCH4IV	ACGT	2 cut(s)	174, 923
HpyCH4V	TGCA	6 cut(s)	161, 446, 665, 814, 1007, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 269, 443, 990
HpyF3I	CTNAG	1 cut(s)	947
HpySE526I	ACGT	2 cut(s)	174, 923
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	8 cut(s)	23, 205, 294, 442, 506, 560, 827, 866
HspAI	GCGC	1 cut(s)	853
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	40, 1096
LmnI	GCTCC	2 cut(s)	110, 734
Lsp1109I	GCAGC	2 cut(s)	125, 677
LweI	GCATC	5 cut(s)	187, 259, 424, 455, 994
MaeI	CTAG	2 cut(s)	147, 183
MaeII	ACGT	2 cut(s)	174, 923
MaeIII	GTNAC	4 cut(s)	90, 919, 1037, 1125
MalI	GATC	2 cut(s)	42, 1098
MboI	GATC	2 cut(s)	40, 1096
MboII	GAAGA	5 cut(s)	507, 805, 959, 971, 1013
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	1096
MhlI	GDGCHC	2 cut(s)	1065, 1156
MluCI	AATT	8 cut(s)	340, 399, 483, 649, 671, 701, 828, 952
MlyI	GAGTC	3 cut(s)	263, 382, 853
Mph1103I	ATGCAT	3 cut(s)	163, 1009, 1081
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	6 cut(s)	246, 618, 648, 699, 834, 1122
MslI	CAYNNNNRTG	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	668
MspCI	CTTAAG	1 cut(s)	1121
MspI	CCGG	2 cut(s)	578, 1093
MspR9I	CCNGG	4 cut(s)	108, 123, 578, 1094
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	163, 1007
MvaI	CCWGG	2 cut(s)	108, 123
MwoI	GCNNNNNNNGC	4 cut(s)	206, 269, 443, 990
NciI	CCSGG	2 cut(s)	578, 1094
NdeII	GATC	2 cut(s)	40, 1096
NlaIII	CATG	8 cut(s)	23, 205, 294, 442, 506, 560, 827, 866
NlaIV	GGNNCC	2 cut(s)	576, 1098
NmeAIII	GCCGAG	2 cut(s)	1034, 1084
NmuCI	GTSAC	2 cut(s)	919, 1125
NsiI	ATGCAT	3 cut(s)	163, 1009, 1081
PctI	GAATGC	2 cut(s)	163, 1007
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	1 cut(s)	935
PfoI	TCCNGGA	2 cut(s)	106, 1092
PkrI	GCNGC	2 cut(s)	115, 667
PleI	GAGTC	3 cut(s)	262, 382, 853
PpsI	GAGTC	3 cut(s)	262, 382, 853
Psp6I	CCWGG	2 cut(s)	106, 121
PspGI	CCWGG	2 cut(s)	106, 121
PspN4I	GGNNCC	2 cut(s)	576, 1098
PspPI	GGNCC	2 cut(s)	4, 574
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	1096
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	2 cut(s)	718, 771
RsaNI	GTAC	2 cut(s)	717, 770
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	6 cut(s)	246, 618, 648, 699, 834, 1122
SatI	GCNGC	2 cut(s)	114, 666
Sau3AI	GATC	2 cut(s)	40, 1096
Sau96I	GGNCC	2 cut(s)	4, 574
SchI	GAGTC	3 cut(s)	263, 382, 853
ScrFI	CCNGG	4 cut(s)	108, 123, 578, 1094
SduI	GDGCHC	2 cut(s)	1065, 1156
SfaNI	GCATC	5 cut(s)	187, 259, 424, 455, 994
SfcI	CTRYAG	2 cut(s)	663, 738
SinI	GGWCC	1 cut(s)	4
SmiI	ATTTAAAT	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	52, 1018, 1121
SmoI	CTYRAG	3 cut(s)	52, 1018, 1121
Sse9I	AATT	8 cut(s)	340, 399, 483, 649, 671, 701, 828, 952
SsiI	CCGC	6 cut(s)	312, 548, 644, 778, 806, 991
SspMI	CTAG	2 cut(s)	147, 183
StyD4I	CCNGG	4 cut(s)	106, 121, 576, 1092
StyI	CCWWGG	3 cut(s)	146, 1033, 1065
SwaI	ATTTAAAT	1 cut(s)	700
TaaI	ACNGT	3 cut(s)	96, 419, 614
TaiI	ACGT	2 cut(s)	177, 926
TaqI	TCGA	3 cut(s)	195, 886, 933
TasI	AATT	8 cut(s)	340, 399, 483, 649, 671, 701, 828, 952
TatI	WGTACW	1 cut(s)	769
TfiI	GAWTC	1 cut(s)	935
Tru1I	TTAA	6 cut(s)	246, 618, 648, 699, 834, 1122
Tru9I	TTAA	6 cut(s)	246, 618, 648, 699, 834, 1122
TscAI	CASTG	2 cut(s)	496, 1134
TseFI	GTSAC	2 cut(s)	919, 1125
TseI	GCWGC	2 cut(s)	113, 665
Tsp45I	GTSAC	2 cut(s)	919, 1125
TspDTI	ATGAA	5 cut(s)	201, 218, 549, 840, 1014
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	2 cut(s)	496, 1134
Vha464I	CTTAAG	1 cut(s)	1121
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	671, 828
XmaJI	CCTAGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	2 cut(s)	147, 183
Zsp2I	ATGCAT	3 cut(s)	163, 1009, 1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.