Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Forward (+)

21141589 .. 21149492

Gene Structure 7904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3225 bp

ATGGCGAACTTAGCAATGACCGGTATACTGGAGAAGATGACCGGCAAGGATAAGGATTTCAGATATATGGCTACTTCTGATTTGCTGAACGAATTAAACAAGGATAATTTTAAAGCTGATTCTGATCTTGAGATAAAGTTGACAAGTATTATTATACAACAACTTGATGATGTTGCTGGTGATGTATCAGGATTGGCCGCGAAATGTCTCGTTCCCTTAGTTAAGAAGGTCAGCGAGCCAAGAGTTGTGGAGATGACAAATAAGCTTTGTGAGAAATTACTAAAGGACAAGGAGCATCGTGATATTGCAAGCATAGCTTTGAAGACTATTATTGCTGAAATTTCTACTCAGTCTCTTGCGCAGTCTATTATTCTATCTATTTTGCCACAGTTGGTTAAGGGAATTACTGATCCAGGAATGAACCATGAGATAAAATGTGAATGTCTTGATAACTTATGTGACGTTCTTCATAAATTTGGCAATTTAATGGCAACCGACCATGAGCTGCTATTAAGTGCCCTCTTGTCTCAGTTGAGCTACAATCAGGCCAGCGTGAGGAAGAAAACTGTGTCATGCATCGCATCTCTTGCTTCGAGCTTGTCAGATGATCTGTTAGCAAAGGTAACCGCTGAAGTTGTCCAGAAATTGAGAAATAAGGGCACAAAATCAGAAATGACTCGTACAAATATTCAGATGATTGGTGCTTTAAGTCGTGCTGTTGGATATCGTTTTGGACCCCATCTTGCTGACACTGTCCCAGTGTTAATTAATTACTGCACAAGTGCATCAGAGAATGACGAGGAGCTTCGTGAATACAGCTTGCAGGCATTGGAGAGTTTTCTGCTTAGGTGCCCCAGGGACATTTCCCCCTATTGTGATGAAATTCTTCATCTTAACTTGGAATATCTAAGTTATGACCCGAACTTCACTGATAACATGGAGGAAGATACTGATGATGAAACTCATGAGGAGGAGGAAGATGATGGGAGTGCGACAGAATATACAGATGATGAAGATGTCAGCTGGAAAGTTCGAAGAGCTGCAGCTAAATGCTTATCGGCGTTAATTGTATCACGTCCTGAGATGCTTTCAAAGCTGTATGGGGAGGCTTGTCCAAAATTAATTGACAGATTTAAAGAGAGGGAGGAAAATGTCAAGATGGACGTTTTCAATACATTCATTGAACTGTTGCAGCAAACTGGAAATGTTACTAAAGGACAAAATGATATAAATGAACAGAGTCCAAGATGGCTACTGAAGCAAGAAGTGCCAAAGATCATCAGATCTATAAATAGGCAGCTACGTGAGAAATCTATCAAGACAAAGGTTGGCGCGTTTTCCGTTTTGAAAGAACTTGTGGTGGTCTTGCCAGATTGCCTGGCGATCGATCACATTGGCTCACTCATTCCTGGAATTGAAAAAGCATTAAATGATAAGTCCTCTACCTCCAATTTGAAGATTGAAGCTCTTATATTTACAAGATTGGTGTTGGAGTCACACAATCCTTCTGTTTTCCATCCTTACATCAAGGCCCTTTCTAGTCCTGTTTTATCTGCTGTGGGGGAGCGTTATTACAAAGTCACAGCTGAGGCATTAAGAGTGTGTGGGGAACTTGTCCGTGTTGTTCGCCCAAATATTGAGGGAATTGGTTTTGACTTCAAACCTTATGTTCATCCAATATATAATGCTATAATGTCACGCTTGACAAACCAAGATCGGTGGAAGATCAAGTCAGAGGTCAAGGAATGTGCTATATCTTGCATGGGTCTAGTTGTGTCAACATTTGGTGATAACCTTGGTGCTGAATTACCTGTATGCCTTCCTGTTCTTGTTGATCGAATGGGAAACGAGATTACTCGACTTACAGCAGTGAAGGCATTTGCTGTCATTGCTGCTTCTCCACTGAAAATAGATCTATCTTGCGTGTTGGAGCAAGTGATTGCAGAGTTGACTGCATTCTTAAGAAAGGCTAATCGGCCTTTAAGACAGGCAACATTAGGGACCTTGAATTCCTTAATTGTTGCTTACGGCGACAAAATTGGTGCAGCAGCTTATGAAGTAATTATTGTAGAACTTGCTACACTAATAAGTGATTCGGACTTGCATATGACGGCCCTTGCCCTGGAACTCTGCTGCACCTTGATGGCAGACAGGTCAAGCCCAGTTGTTGGTTTGGCTGTTAGAAGCAAAGTTCTTCCGCAAGCATTAACGTTAATTAGAAGCTCATTGCTGCAGGGGCAAGCCCTTTTGGCATTGCAAAACTTTTTTGCTTCCTTGGTGCATTCTGCAAATACAAGTTTTGATGCCTTACTAGACTCTCTTCTTTTGAGTGCTAAGCCCTCTCCTCATTCGGGTGGGGTTGCAAAGCAAGCTTTGTATTCAATAGCTCAATGTGTGGCCGTCCTTTGCCTTGCTGCTGGTGCCCAGCAATGTTCATCTACCGTGAAAATGCTTACTGAAATTCTCAAATATGACAGCACTACAAATTCAGCTAAGCAGCACCTTGCTTTGCTGTGTCTCGGGGAGATTGGGAGGCGGAAAGATCGAGGCTCCCATGACCATATAGAGAATATTGTCATTGAGTCCTTTCAATCTCCTTTCGAAGATCGATCAAATCTGCCGCCTCCTATGCTCTTGGCAATATTGCTGTTGGTAACCTACTCAAGTATTTGCCTTTTATTTTGGACCAGATTGACAATCAGCAGAAAAAACAGTATCTCTTGCTTCATTCTCTGAAAGGAGGTCATAGTAAGGCAATCTGTAGATAAAGCAGAGTTTCCGGATTCCAGTGTTGAGAAGATACTTAATTTACTTTTTAATCACTGTGAAAGTGAGGAAGAGGGTGTTCGCAACGTAGTAGCTGAGTGTCTTGGTAAAATTGCACTTATCGAACCCGCAAAACTTGTTCCTGCACTTAAGGAACGAACATCCAGTCCAGCTGCTTTCACAAGAGCTACTGTTGTCATTGCAGTTAAATATTCGATAGTTGAGAGGCCGGAGAGGATAGATGAGATCTTATACCCTGAAATCTCATCATTCCTGATGCTTATTAAGGATCATGACCGGCATGTGAGGCGTGCGGCTGTGTTGGTTTTAAGTACATTTGCCCACAATAAGCCAAATCTGATCAAGGGGCTCCTGCCAGAGTTGTTGCCGCTTCTTTATGATCAAACTGTCATCAAGAAAGAGTTGATCAGGACAGTTGATCGATCTCGGCCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

1075

Amino Acids

118.91

Weight (kDa)

5.99

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CAND1	PF25782	463 - 588	1.8e-42	CAND1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	360
AccB1I	GGYRCC	2 cut(s)	849, 2420
AccB7I	CCANNNNNTGG	1 cut(s)	2168
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	2 cut(s)	200, 1334
AccIII	TCCGGA	1 cut(s)	2779
AciI	CCGC	8 cut(s)	198, 627, 2198, 2536, 2621, 2895, 3080, 3155
AclI	AACGTT	1 cut(s)	2210
AclWI	GGATC	2 cut(s)	404, 3063
AcoI	YGGCCR	2 cut(s)	195, 2397
AcsI	RAATTY	6 cut(s)	339, 473, 882, 2008, 2460, 2485
AcuI	CTGAAG	2 cut(s)	651, 1277
AfaI	GTAC	2 cut(s)	682, 3100
AfiI	CCNNNNNNNGG	4 cut(s)	555, 2122, 2168, 2351
AflII	CTTAAG	2 cut(s)	1960, 2915
AgeI	ACCGGT	1 cut(s)	20
AjiI	CACGTC	1 cut(s)	1076
AjnI	CCWGG	5 cut(s)	412, 854, 1377, 1408, 2121
AloI	GAACNNNNNNTCC	2 cut(s)	2917, 2949
Alw26I	GTCTC	4 cut(s)	212, 357, 531, 2522
AlwI	GGATC	2 cut(s)	404, 3063
Ama87I	CYCGRG	1 cut(s)	2519
Aor13HI	TCCGGA	1 cut(s)	2779
AoxI	GGCC	8 cut(s)	195, 546, 1530, 1976, 2112, 2397, 2993, 3215
ApoI	RAATTY	6 cut(s)	339, 473, 882, 2008, 2460, 2485
ArsI	GACNNNNNNTTYG	2 cut(s)	2917, 2949
AseI	ATTAAT	2 cut(s)	768, 1121
AsiGI	ACCGGT	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	2 cut(s)	361, 1334
AspS9I	GGNCC	6 cut(s)	734, 1531, 2001, 2113, 2685, 3216
AsuHPI	GGTGA	2 cut(s)	191, 1799
AsuII	TTCGAA	2 cut(s)	1033, 2601
AvaI	CYCGRG	1 cut(s)	2519
AvaII	GGWCC	3 cut(s)	734, 2001, 2685
BaeGI	GKGCMC	4 cut(s)	520, 662, 854, 2425
BanI	GGYRCC	2 cut(s)	849, 2420
BanII	GRGCYC	1 cut(s)	3138
BbsI	GAAGAC	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	1587
BccI	CCATC	6 cut(s)	747, 977, 1153, 1242, 1524, 2137
BceAI	ACGGC	3 cut(s)	2044, 2127, 2384
BciT130I	CCWGG	5 cut(s)	414, 856, 1379, 1410, 2123
BclI	TGATCA	3 cut(s)	3126, 3166, 3192
BcoDI	GTCTC	4 cut(s)	212, 357, 531, 2522
BfaI	CTAG	3 cut(s)	1539, 1769, 2312
BfmI	CTRYAG	3 cut(s)	1041, 2231, 2760
BfrI	CTTAAG	2 cut(s)	1960, 2915
BglI	GCCNNNNNGGC	1 cut(s)	2249
BglII	AGATCT	3 cut(s)	1283, 1912, 3012
BlpI	GCTNAGC	2 cut(s)	2334, 2493
Bme1390I	CCNGG	5 cut(s)	414, 856, 1379, 1410, 2123
Bme18I	GGWCC	3 cut(s)	734, 2001, 2685
BmeT110I	CYCGRG	1 cut(s)	2519
BmgBI	CACGTC	1 cut(s)	1076
BmgT120I	GGNCC	6 cut(s)	734, 1531, 2001, 2113, 2685, 3216
BmiI	GGNNCC	6 cut(s)	736, 851, 2002, 2422, 2551, 3137
BmrFI	CCNGG	5 cut(s)	414, 856, 1379, 1410, 2123
BmrI	ACTGGG	2 cut(s)	752, 2156
BmsI	GCATC	7 cut(s)	304, 585, 590, 794, 1074, 2293, 3033
BmuI	ACTGGG	2 cut(s)	752, 2156
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	2 cut(s)	845, 1587
Bpu1102I	GCTNAGC	2 cut(s)	2334, 2493
Bpu14I	TTCGAA	2 cut(s)	1033, 2601
BpuEI	CTTGAG	2 cut(s)	149, 2647
Bsa29I	ATCGAT	3 cut(s)	1386, 2608, 3208
BsaAI	YACGTR	1 cut(s)	1304
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	854, 855, 1795, 2121, 2274
BsaWI	WCCGGW	2 cut(s)	20, 2779
Bsc4I	CCNNNNNNNGG	4 cut(s)	555, 2122, 2168, 2351
Bse118I	RCCGGY	3 cut(s)	20, 41, 3063
Bse1I	ACTGG	6 cut(s)	33, 758, 1204, 2162, 2787, 2931
Bse3DI	GCAATG	6 cut(s)	21, 1887, 2225, 2252, 2435, 2964
Bse8I	GATNNNNATC	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	2779
BseBI	CCWGG	5 cut(s)	414, 856, 1379, 1410, 2123
BseCI	ATCGAT	3 cut(s)	1386, 2608, 3208
BseDI	CCNNGG	5 cut(s)	854, 855, 1795, 2121, 2274
BseGI	GGATG	3 cut(s)	1516, 1672, 2927
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	4 cut(s)	555, 2122, 2168, 2351
BseMI	GCAATG	6 cut(s)	21, 1887, 2225, 2252, 2435, 2964
BseMII	CTCAG	5 cut(s)	362, 542, 1071, 1578, 2853
BseNI	ACTGG	6 cut(s)	33, 758, 1204, 2162, 2787, 2931
BseRI	GAGGAG	4 cut(s)	815, 983, 986, 2334
BseSI	GKGCMC	4 cut(s)	520, 662, 854, 2425
BseYI	CCCAGC	1 cut(s)	2424
BsgI	GTGCAG	4 cut(s)	760, 2064, 2119, 2895
Bsh1236I	CGCG	2 cut(s)	200, 1334
Bsh1285I	CGRYCG	1 cut(s)	1386
BshFI	GGCC	8 cut(s)	197, 548, 1532, 1978, 2114, 2399, 2995, 3217
BshNI	GGYRCC	2 cut(s)	849, 2420
BshTI	ACCGGT	1 cut(s)	20
BshVI	ATCGAT	3 cut(s)	1386, 2608, 3208
BsiEI	CGRYCG	1 cut(s)	1386
BsiHKCI	CYCGRG	1 cut(s)	2519
BsiSI	CCGG	5 cut(s)	21, 42, 2780, 2996, 3064
BslFI	GGGAC	3 cut(s)	740, 872, 2014
BslI	CCNNNNNNNGG	4 cut(s)	555, 2122, 2168, 2351
BsmAI	GTCTC	4 cut(s)	212, 357, 531, 2522
BsmFI	GGGAC	3 cut(s)	740, 872, 2014
BsmI	GAATGC	2 cut(s)	1955, 2281
BsnI	GGCC	8 cut(s)	197, 548, 1532, 1978, 2114, 2399, 2995, 3217
BsoBI	CYCGRG	1 cut(s)	2519
Bsp119I	TTCGAA	2 cut(s)	1033, 2601
Bsp1286I	GDGCHC	5 cut(s)	520, 662, 854, 2425, 3138
Bsp13I	TCCGGA	1 cut(s)	2779
Bsp1720I	GCTNAGC	2 cut(s)	2334, 2493
BspACI	CCGC	8 cut(s)	198, 627, 2198, 2536, 2621, 2895, 3080, 3155
BspANI	GGCC	8 cut(s)	197, 548, 1532, 1978, 2114, 2399, 2995, 3217
BspCNI	CTCAG	5 cut(s)	361, 541, 1072, 1579, 2854
BspDI	ATCGAT	3 cut(s)	1386, 2608, 3208
BspEI	TCCGGA	1 cut(s)	2779
BspFNI	CGCG	2 cut(s)	200, 1334
BspHI	TCATGA	2 cut(s)	964, 3058
BspLI	GGNNCC	6 cut(s)	736, 851, 2002, 2422, 2551, 3137
BspMAI	CTGCAG	2 cut(s)	1045, 2235
BspPI	GGATC	2 cut(s)	404, 3063
BspQI	GCTCTTC	1 cut(s)	1030
BspT104I	TTCGAA	2 cut(s)	1033, 2601
BspT107I	GGYRCC	2 cut(s)	849, 2420
BspTI	CTTAAG	2 cut(s)	1960, 2915
BsrDI	GCAATG	6 cut(s)	21, 1887, 2225, 2252, 2435, 2964
BsrFI	RCCGGY	3 cut(s)	20, 41, 3063
BsrI	ACTGG	6 cut(s)	33, 758, 1204, 2162, 2787, 2931
BssAI	RCCGGY	3 cut(s)	20, 41, 3063
BssECI	CCNNGG	5 cut(s)	854, 855, 1795, 2121, 2274
BssNAI	GTATAC	1 cut(s)	26
BssT1I	CCWWGG	2 cut(s)	1795, 2274
Bst1107I	GTATAC	1 cut(s)	26
Bst2UI	CCWGG	5 cut(s)	414, 856, 1379, 1410, 2123
Bst6I	CTCTTC	3 cut(s)	1030, 2325, 2832
BstAFI	CTTAAG	2 cut(s)	1960, 2915
BstAPI	GCANNNNNTGC	2 cut(s)	587, 1267
BstBAI	YACGTR	1 cut(s)	1304
BstBI	TTCGAA	2 cut(s)	1033, 2601
BstC8I	GCNNGC	9 cut(s)	236, 310, 550, 821, 825, 2202, 2241, 2370, 3078
BstEII	GGTNACC	2 cut(s)	622, 2653
BstF5I	GGATG	3 cut(s)	1516, 1672, 2927
BstFNI	CGCG	2 cut(s)	200, 1334
BstHHI	GCGC	2 cut(s)	361, 1334
BstMAI	GTCTC	4 cut(s)	212, 357, 531, 2522
BstMCI	CGRYCG	1 cut(s)	1386
BstNI	CCWGG	5 cut(s)	414, 856, 1379, 1410, 2123
BstNSI	RCATGY	1 cut(s)	3071
BstPI	GGTNACC	2 cut(s)	622, 2653
BstSCI	CCNGG	5 cut(s)	412, 854, 1377, 1408, 2121
BstSFI	CTRYAG	3 cut(s)	1041, 2231, 2760
BstSLI	GKGCMC	4 cut(s)	520, 662, 854, 2425
BstUI	CGCG	2 cut(s)	200, 1334
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	3 cut(s)	1283, 1912, 3012
BstYI	RGATCY	3 cut(s)	1283, 1912, 3012
BstZ17I	GTATAC	1 cut(s)	26
Bsu15I	ATCGAT	3 cut(s)	1386, 2608, 3208
BsuRI	GGCC	8 cut(s)	197, 548, 1532, 1978, 2114, 2399, 2995, 3217
BsuTUI	ATCGAT	3 cut(s)	1386, 2608, 3208
BtgZI	GCGATG	1 cut(s)	562
BtrI	CACGTC	1 cut(s)	1076
BtsCI	GGATG	3 cut(s)	1516, 1672, 2927
BtsI	GCAGTG	1 cut(s)	1875
BtsIMutI	CAGTG	7 cut(s)	750, 765, 927, 1875, 1901, 2794, 2821
Cac8I	GCNNGC	9 cut(s)	236, 310, 550, 821, 825, 2202, 2241, 2370, 3078
CciI	TCATGA	2 cut(s)	964, 3058
CfoI	GCGC	2 cut(s)	361, 1334
Cfr10I	RCCGGY	3 cut(s)	20, 41, 3063
Cfr13I	GGNCC	6 cut(s)	734, 1531, 2001, 2113, 2685, 3216
ClaI	ATCGAT	3 cut(s)	1386, 2608, 3208
Csp6I	GTAC	2 cut(s)	681, 3099
CspAI	ACCGGT	1 cut(s)	20
CspCI	CAANNNNNGTGG	4 cut(s)	228, 263, 1700, 1735
CviAII	CATG	9 cut(s)	425, 500, 573, 937, 965, 1762, 2555, 3059, 3068
CviQI	GTAC	2 cut(s)	681, 3099
DraI	TTTAAA	2 cut(s)	112, 1135
EaeI	YGGCCR	2 cut(s)	195, 2397
Eam1104I	CTCTTC	3 cut(s)	1030, 2325, 2832
EarI	CTCTTC	3 cut(s)	1030, 2325, 2832
EciI	GGCGGA	1 cut(s)	2551
Eco130I	CCWWGG	2 cut(s)	1795, 2274
Eco24I	GRGCYC	1 cut(s)	3138
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	3 cut(s)	734, 2001, 2685
Eco57I	CTGAAG	2 cut(s)	651, 1277
Eco88I	CYCGRG	1 cut(s)	2519
Eco91I	GGTNACC	2 cut(s)	622, 2653
EcoO109I	RGGNCCY	2 cut(s)	1531, 2001
EcoO65I	GGTNACC	2 cut(s)	622, 2653
EcoRI	GAATTC	1 cut(s)	2008
EcoRII	CCWGG	5 cut(s)	412, 854, 1377, 1408, 2121
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	2 cut(s)	1795, 2274
EcoT22I	ATGCAT	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	3138
ErhI	CCWWGG	2 cut(s)	1795, 2274
FaeI	CATG	9 cut(s)	428, 503, 576, 940, 968, 1765, 2558, 3062, 3071
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FaqI	GGGAC	3 cut(s)	740, 872, 2014
FatI	CATG	9 cut(s)	424, 499, 572, 936, 964, 1761, 2554, 3058, 3067
FauI	CCCGC	1 cut(s)	2902
FauNDI	CATATG	1 cut(s)	2106
FbaI	TGATCA	3 cut(s)	3126, 3166, 3192
FblI	GTMKAC	1 cut(s)	25
FokI	GGATG	3 cut(s)	1503, 1659, 2914
FriOI	GRGCYC	1 cut(s)	3138
FspBI	CTAG	3 cut(s)	1539, 1769, 2312
FspI	TGCGCA	1 cut(s)	360
GlaI	GCGC	2 cut(s)	360, 1333
GsaI	CCCAGC	1 cut(s)	2428
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	8 cut(s)	197, 548, 1532, 1978, 2114, 2399, 2995, 3217
HapII	CCGG	5 cut(s)	21, 42, 2780, 2996, 3064
HhaI	GCGC	2 cut(s)	361, 1334
Hin1II	CATG	9 cut(s)	428, 503, 576, 940, 968, 1765, 2558, 3062, 3071
Hin6I	GCGC	2 cut(s)	359, 1332
HinP1I	GCGC	2 cut(s)	359, 1332
HincII	GTYRAC	3 cut(s)	141, 1779, 1950
HindII	GTYRAC	3 cut(s)	141, 1779, 1950
HindIII	AAGCTT	2 cut(s)	263, 2370
HinfI	GANTC	8 cut(s)	119, 676, 1240, 1493, 2093, 2315, 2582, 2783
HpaII	CCGG	5 cut(s)	21, 42, 2780, 2996, 3064
HphI	GGTGA	2 cut(s)	191, 1799
Hpy166II	GTNNAC	4 cut(s)	26, 141, 1779, 1950
Hpy8I	GTNNAC	4 cut(s)	26, 141, 1779, 1950
HpyAV	CCTTC	4 cut(s)	220, 1515, 1829, 1867
HpyCH4IV	ACGT	6 cut(s)	462, 1075, 1164, 1303, 2210, 2853
HpySE526I	ACGT	6 cut(s)	462, 1075, 1164, 1303, 2210, 2853
Hsp92II	CATG	9 cut(s)	428, 503, 576, 940, 968, 1765, 2558, 3062, 3071
HspAI	GCGC	2 cut(s)	359, 1332
Kpn2I	TCCGGA	1 cut(s)	2779
Ksp22I	TGATCA	3 cut(s)	3126, 3166, 3192
LguI	GCTCTTC	1 cut(s)	1030
LmnI	GCTCC	6 cut(s)	292, 802, 1564, 1930, 2555, 3141
LweI	GCATC	7 cut(s)	304, 585, 590, 794, 1074, 2293, 3033
MaeI	CTAG	3 cut(s)	1539, 1769, 2312
MaeII	ACGT	6 cut(s)	462, 1075, 1164, 1303, 2210, 2853
MaeIII	GTNAC	7 cut(s)	458, 622, 1207, 1494, 1579, 1695, 2653
MflI	RGATCY	3 cut(s)	1283, 1912, 3012
MhlI	GDGCHC	5 cut(s)	520, 662, 854, 2425, 3138
MlyI	GAGTC	5 cut(s)	670, 1249, 1502, 2309, 2591
MmeI	TCCRAC	3 cut(s)	700, 1470, 1908
Mph1103I	ATGCAT	1 cut(s)	578
MroI	TCCGGA	1 cut(s)	2779
MroXI	GAANNNNTTC	1 cut(s)	885
MslI	CAYNNNNRTG	2 cut(s)	2141, 2352
MspA1I	CMGCKG	4 cut(s)	629, 1023, 1586, 2939
MspCI	CTTAAG	2 cut(s)	1960, 2915
MspI	CCGG	5 cut(s)	21, 42, 2780, 2996, 3064
MspR9I	CCNGG	5 cut(s)	414, 856, 1379, 1410, 2123
Mva1269I	GAATGC	2 cut(s)	1955, 2281
MvaI	CCWGG	5 cut(s)	414, 856, 1379, 1410, 2123
MvnI	CGCG	2 cut(s)	200, 1334
NdeI	CATATG	1 cut(s)	2106
NlaIII	CATG	9 cut(s)	428, 503, 576, 940, 968, 1765, 2558, 3062, 3071
NlaIV	GGNNCC	6 cut(s)	736, 851, 2002, 2422, 2551, 3137
NmeAIII	GCCGAG	1 cut(s)	3193
NmuCI	GTSAC	4 cut(s)	458, 1494, 1579, 1695
NsbI	TGCGCA	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	1 cut(s)	3071
NspV	TTCGAA	2 cut(s)	1033, 2601
PacI	TTAATTAA	1 cut(s)	768
PagI	TCATGA	2 cut(s)	964, 3058
PasI	CCCWGGG	1 cut(s)	855
PciSI	GCTCTTC	1 cut(s)	1030
PctI	GAATGC	2 cut(s)	1955, 2281
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	3 cut(s)	119, 2093, 2783
PflFI	GACNNNGTC	1 cut(s)	752
PflMI	CCANNNNNTGG	1 cut(s)	2168
PfoI	TCCNGGA	2 cut(s)	412, 1408
PinAI	ACCGGT	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	1386
PleI	GAGTC	5 cut(s)	670, 1248, 1501, 2309, 2590
PpsI	GAGTC	5 cut(s)	670, 1248, 1501, 2309, 2590
Ppu21I	YACGTR	1 cut(s)	1304
PpuMI	RGGWCCY	1 cut(s)	2001
PshBI	ATTAAT	2 cut(s)	768, 1121
Psp1406I	AACGTT	1 cut(s)	2210
Psp5II	RGGWCCY	1 cut(s)	2001
Psp6I	CCWGG	5 cut(s)	412, 854, 1377, 1408, 2121
PspEI	GGTNACC	2 cut(s)	622, 2653
PspFI	CCCAGC	1 cut(s)	2424
PspGI	CCWGG	5 cut(s)	412, 854, 1377, 1408, 2121
PspN4I	GGNNCC	6 cut(s)	736, 851, 2002, 2422, 2551, 3137
PspPI	GGNCC	6 cut(s)	734, 1531, 2001, 2113, 2685, 3216
PspPPI	RGGWCCY	1 cut(s)	2001
PstI	CTGCAG	2 cut(s)	1045, 2235
PsuI	RGATCY	3 cut(s)	1283, 1912, 3012
PsyI	GACNNNGTC	1 cut(s)	752
PvuI	CGATCG	1 cut(s)	1386
PvuII	CAGCTG	3 cut(s)	1023, 1586, 2939
RsaI	GTAC	2 cut(s)	682, 3100
RsaNI	GTAC	2 cut(s)	681, 3099
RseI	CAYNNNNRTG	2 cut(s)	2141, 2352
SapI	GCTCTTC	1 cut(s)	1030
Sau96I	GGNCC	6 cut(s)	734, 1531, 2001, 2113, 2685, 3216
SchI	GAGTC	5 cut(s)	670, 1249, 1502, 2309, 2591
ScrFI	CCNGG	5 cut(s)	414, 856, 1379, 1410, 2123
SduI	GDGCHC	5 cut(s)	520, 662, 854, 2425, 3138
SfaNI	GCATC	7 cut(s)	304, 585, 590, 794, 1074, 2293, 3033
SfcI	CTRYAG	3 cut(s)	1041, 2231, 2760
SfuI	TTCGAA	2 cut(s)	1033, 2601
SinI	GGWCC	3 cut(s)	734, 2001, 2685
SmiMI	CAYNNNNRTG	2 cut(s)	2141, 2352
SmlI	CTYRAG	4 cut(s)	128, 1960, 2662, 2915
SmoI	CTYRAG	4 cut(s)	128, 1960, 2662, 2915
SsiI	CCGC	8 cut(s)	198, 627, 2198, 2536, 2621, 2895, 3080, 3155
SspI	AATATT	5 cut(s)	688, 1636, 2572, 2643, 2978
SspMI	CTAG	3 cut(s)	1539, 1769, 2312
StyD4I	CCNGG	5 cut(s)	412, 854, 1377, 1408, 2121
StyI	CCWWGG	2 cut(s)	1795, 2274
TaiI	ACGT	6 cut(s)	465, 1078, 1167, 1306, 2213, 2856
TatI	WGTACW	1 cut(s)	3098
TauI	GCSGC	4 cut(s)	200, 2623, 3083, 3157
TfiI	GAWTC	3 cut(s)	119, 2093, 2783
TscAI	CASTG	7 cut(s)	757, 765, 934, 1875, 1908, 2794, 2828
TseFI	GTSAC	4 cut(s)	458, 1494, 1579, 1695
Tsp45I	GTSAC	4 cut(s)	458, 1494, 1579, 1695
TspGWI	ACGGA	2 cut(s)	1330, 1607
TspRI	CASTG	7 cut(s)	757, 765, 934, 1875, 1908, 2794, 2828
Tth111I	GACNNNGTC	1 cut(s)	752
Van91I	CCANNNNNTGG	1 cut(s)	2168
Vha464I	CTTAAG	2 cut(s)	1960, 2915
VpaK11BI	GGWCC	3 cut(s)	734, 2001, 2685
VspI	ATTAAT	2 cut(s)	768, 1121
XapI	RAATTY	6 cut(s)	339, 473, 882, 2008, 2460, 2485
XceI	RCATGY	1 cut(s)	3071
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	3 cut(s)	1539, 1769, 2312
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.