pycom02g03300

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009223
Physical Location & Seq
Forward (+)
2171924 .. 2174413
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1095 bp
ATGACGATAGACGACGAGAGCTCCGTCTACGTCGGTGGCCTTCCGTACGACGCCACCGAGGAAACCGTCCGCAGAGTCTTCGAGCTGTACGGAAACGTCATTGCGGTTAAGATTATCAACGACGCTTCGACGCGCGGAAAATGCTATGGCTTTGTCACTTTCAGGAATCCCCGGTCAGCGATTCTCGCCATCAATGAGATGGATGGGAGGACTGTTGATGGAAGAGTGATCAGAGTAAATGAAGTGAGGAGTAGAGGTAGAAGATTGAGTTTTGGAAGAGAGAGGGAGAGTTTCCGGTGGAATGCTGAGAGGGGGAGGAATTGGGATAGGGGTAGATACCATGAGAGGGATTTTGATCGGGAGAGTGACCGGTATAAGGATAGATACAGTGATCGGTCGAGAGAGCATGACCGTGACAGGTCTCTTGAGGATGATGGTGAAGAGAGGGACAGACGGTATGAGAGGGGACACGATTATGATCATGTAAGGAACCATTTTTTGGATAGAGATCATGATCAGGACAGGGATGTGGAAGATAACCAGCAAGGACAGAGCAGGAACCGCGATCAGGGTTGGGAACGAGATGGAGCTTTGGAGTCTGAACGAGATAGGGAGATGGACAAAACCAAAAGCCATGATAGTATCAGTGACAAGGATAGGGATGACCAGTCAAGGAGATGGAACGGTTCAAGTACTGTTGACCGACAAAGTCGGGACCTCATATCTCATCCAAGTGATGATTACAATGTTCAGGTAAAAGAACAGCTTGAGAGATCCATGCAAAGGTTTGAAGAAATAAAAAATGAGACTATTCAGATGGAGGAGAGCTTAGAGGAGAAAGAGAAACTTGTTTTGGATTTACAGAAGAAATCTAAGAAATTGGAGGATGCCTTGATAAATGCAAAGAAGAACTCTTCACACCAGAAGTTGAAGCTAACCAAGCTACATAAATCCTTTATGCAAGTAAAAGATTACACTGAAAGACTTAAAATCTGTGAACACGAACTTCAGTCGCTCGTTGATACAGAATTATTGGAACATGATAGTGATGATGTTGGCTTAGGGGATGAAATCTTGACAATTGGTGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

365

Amino Acids

43.21

Weight (kDa)

5.36

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 4.5e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 1 cut(s) 27
AccII CGCG 3 cut(s) 133, 135, 564
AciI CCGC 4 cut(s) 70, 104, 135, 562
AclWI GGATC 1 cut(s) 768
AcuI CTGAAG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 47, 89, 694
AfiI CCNNNNNNNGG 5 cut(s) 346, 376, 499, 568, 783
AgeI ACCGGT 1 cut(s) 369
AgsI TTSAA 3 cut(s) 690, 791, 931
AjuI GAANNNNNNNTTGG 4 cut(s) 482, 514, 836, 868
AluBI AGCT 7 cut(s) 21, 85, 590, 766, 828, 934, 943
AluI AGCT 7 cut(s) 21, 85, 590, 766, 828, 934, 943
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 2 cut(s) 426, 800
AlwI GGATC 1 cut(s) 768
AoxI GGCC 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 369
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 715
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 9 cut(s) 193, 197, 197, 212, 428, 578, 610, 672, 811
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BclI TGATCA 3 cut(s) 228, 478, 514
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 426, 800
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 715
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 3 cut(s) 491, 560, 716
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 2 cut(s) 877, 1078
BpiI GAAGAC 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 1060
BpuEI CTTGAG 2 cut(s) 446, 788
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 4 cut(s) 354, 477, 507, 513
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 57, 170
BsaWI WCCGGW 2 cut(s) 294, 369
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 241, 271
Bsc4I CCNNNNNNNGG 5 cut(s) 346, 376, 499, 568, 783
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 667
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 4 cut(s) 354, 477, 507, 513
BseDI CCNNGG 2 cut(s) 57, 170
BseGI GGATG 7 cut(s) 208, 436, 532, 667, 727, 892, 1072
BseJI GATNNNNATC 4 cut(s) 354, 477, 507, 513
BseLI CCNNNNNNNGG 5 cut(s) 346, 376, 499, 568, 783
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 3 cut(s) 262, 836, 848
Bsh1236I CGCG 3 cut(s) 133, 135, 564
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 3 cut(s) 172, 295, 370
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 3 cut(s) 461, 480, 728
BslI CCNNNNNNNGG 5 cut(s) 346, 376, 499, 568, 783
BsmAI GTCTC 2 cut(s) 426, 800
BsmFI GGGAC 3 cut(s) 461, 480, 728
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
BspACI CCGC 4 cut(s) 70, 104, 135, 562
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 3 cut(s) 133, 135, 564
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 3 cut(s) 491, 560, 716
BspPI GGATC 1 cut(s) 768
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 369
BsrI ACTGG 1 cut(s) 667
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 57, 170
BssMI GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
BssNI GRCGYC 1 cut(s) 51
Bst4CI ACNGT 7 cut(s) 67, 214, 389, 413, 456, 686, 697
Bst6I CTCTTC 4 cut(s) 217, 271, 435, 919
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 4 cut(s) 306, 829, 873, 1060
BstF5I GGATG 7 cut(s) 208, 436, 532, 667, 727, 892, 1072
BstFNI CGCG 3 cut(s) 133, 135, 564
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 8 cut(s) 231, 358, 394, 481, 511, 517, 568, 776
BstMAI GTCTC 2 cut(s) 426, 800
BstMBI GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 4 cut(s) 141, 185, 561, 940
BstSCI CCNGG 1 cut(s) 170
BstUI CGCG 3 cut(s) 133, 135, 564
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 773
BstYI RGATCY 1 cut(s) 773
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 7 cut(s) 208, 436, 532, 667, 727, 892, 1072
BtsIMutI CAGTG 3 cut(s) 394, 652, 975
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 715
CseI GACGC 3 cut(s) 59, 131, 139
Csp6I GTAC 3 cut(s) 46, 88, 693
CspAI ACCGGT 1 cut(s) 369
CviAII CATG 8 cut(s) 341, 407, 482, 512, 635, 778, 1040, 1092
CviQI GTAC 3 cut(s) 46, 88, 693
DdeI CTNAG 4 cut(s) 306, 829, 873, 1060
DpnI GATC 8 cut(s) 230, 357, 393, 480, 510, 516, 567, 775
DpnII GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
Eam1104I CTCTTC 4 cut(s) 217, 271, 435, 919
EarI CTCTTC 4 cut(s) 217, 271, 435, 919
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 992
EcoICRI GAGCTC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 715
EcoT22I ATGCAT 1 cut(s) 1093
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 8 cut(s) 344, 410, 485, 515, 638, 781, 1043, 1095
FalI AAGNNNNNCTT 4 cut(s) 750, 782, 831, 863
FaqI GGGAC 3 cut(s) 461, 480, 728
FatI CATG 8 cut(s) 340, 406, 481, 511, 634, 777, 1039, 1091
FbaI TGATCA 3 cut(s) 228, 478, 514
FblI GTMKAC 1 cut(s) 27
FokI GGATG 7 cut(s) 215, 443, 539, 674, 714, 899, 1079
FriOI GRGCYC 1 cut(s) 23
GlaI GCGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 172, 295, 370
HgaI GACGC 3 cut(s) 59, 131, 139
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 8 cut(s) 344, 410, 485, 515, 638, 781, 1043, 1095
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 4 cut(s) 75, 166, 181, 596
HpaII CCGG 3 cut(s) 172, 295, 370
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 3 cut(s) 28, 700, 998
Hpy188I TCNGA 3 cut(s) 233, 601, 816
Hpy188III TCNNGA 8 cut(s) 163, 359, 399, 425, 512, 518, 713, 1075
Hpy8I GTNNAC 3 cut(s) 28, 700, 998
Hpy99I CGWCG 5 cut(s) 17, 35, 53, 125, 133
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 7 cut(s) 67, 214, 389, 413, 456, 686, 697
HpyCH4IV ACGT 2 cut(s) 30, 96
HpyCH4V TGCA 4 cut(s) 781, 902, 961, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 185, 561, 940
HpyF3I CTNAG 4 cut(s) 306, 829, 873, 1060
HpySE526I ACGT 2 cut(s) 30, 96
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 8 cut(s) 344, 410, 485, 515, 638, 781, 1043, 1095
HspAI GCGC 1 cut(s) 133
Ksp22I TGATCA 3 cut(s) 228, 478, 514
Kzo9I GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
LmnI GCTCC 2 cut(s) 26, 587
LweI GCATC 2 cut(s) 877, 1078
MaeII ACGT 2 cut(s) 30, 96
MaeIII GTNAC 4 cut(s) 154, 365, 413, 647
MalI GATC 8 cut(s) 230, 357, 393, 480, 510, 516, 567, 775
MboI GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 4 cut(s) 319, 878, 1028, 1080
MlyI GAGTC 2 cut(s) 84, 605
Mph1103I ATGCAT 1 cut(s) 1093
MseI TTAA 2 cut(s) 108, 987
MslI CAYNNNNRTG 4 cut(s) 411, 474, 732, 1044
MspI CCGG 3 cut(s) 172, 295, 370
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 1080
Mva1269I GAATGC 1 cut(s) 307
MvnI CGCG 3 cut(s) 133, 135, 564
MwoI GCNNNNNNNGC 4 cut(s) 141, 185, 561, 940
NciI CCSGG 1 cut(s) 172
NdeII GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
NlaIII CATG 8 cut(s) 344, 410, 485, 515, 638, 781, 1043, 1095
NlaIV GGNNCC 3 cut(s) 491, 560, 716
NmuCI GTSAC 4 cut(s) 154, 365, 413, 647
NsiI ATGCAT 1 cut(s) 1093
PagI TCATGA 1 cut(s) 511
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 54
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 166, 181
Pfl23II CGTACG 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 708
PflMI CCANNNNNTGG 1 cut(s) 499
PinAI ACCGGT 1 cut(s) 369
PleI GAGTC 2 cut(s) 83, 604
PpsI GAGTC 2 cut(s) 83, 604
PpuMI RGGWCCY 1 cut(s) 715
Psp124BI GAGCTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 715
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 491, 560, 716
PspPI GGNCC 1 cut(s) 715
PspPPI RGGWCCY 1 cut(s) 715
PsuI RGATCY 1 cut(s) 773
PsyI GACNNNGTC 1 cut(s) 708
RsaI GTAC 3 cut(s) 47, 89, 694
RsaNI GTAC 3 cut(s) 46, 88, 693
RseI CAYNNNNRTG 4 cut(s) 411, 474, 732, 1044
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 108, 987
Sau3AI GATC 8 cut(s) 228, 355, 391, 478, 508, 514, 565, 773
Sau96I GGNCC 1 cut(s) 715
ScaI AGTACT 1 cut(s) 694
SchI GAGTC 2 cut(s) 84, 605
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 2 cut(s) 877, 1078
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 4 cut(s) 411, 474, 732, 1044
SmlI CTYRAG 2 cut(s) 425, 767
SmoI CTYRAG 2 cut(s) 425, 767
Sse9I AATT 4 cut(s) 319, 878, 1028, 1080
SsiI CCGC 4 cut(s) 70, 104, 135, 562
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 7 cut(s) 67, 214, 389, 413, 456, 686, 697
TaiI ACGT 2 cut(s) 33, 99
TaqI TCGA 3 cut(s) 81, 128, 398
TaqII GACCGA 2 cut(s) 384, 717
TasI AATT 4 cut(s) 319, 878, 1028, 1080
TatI WGTACW 1 cut(s) 692
TfiI GAWTC 2 cut(s) 166, 181
Tru1I TTAA 2 cut(s) 108, 987
Tru9I TTAA 2 cut(s) 108, 987
TscAI CASTG 3 cut(s) 394, 652, 982
TseFI GTSAC 4 cut(s) 154, 365, 413, 647
Tsp45I GTSAC 4 cut(s) 154, 365, 413, 647
TspDTI ATGAA 2 cut(s) 255, 1083
TspGWI ACGGA 3 cut(s) 13, 33, 105
TspRI CASTG 3 cut(s) 394, 652, 982
Tth111I GACNNNGTC 1 cut(s) 708
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 694
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.