Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014831

Physical Location & Seq

Genomic Coordinates Forward (+)

3173706 .. 3175134

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTATAATCTTTTGTTTCAGCTGTTGTGCATTTTGTATGATATGGATACTGCTGCTGCTCGAACCCAGAGATTTTGGAACATTGGAATCCGGAGACTGCTGTTAATAATCGGCGGGGCGGTTGCCATTGTAGTTGTATCCCAGTGTTTTGAGCTTCCCTATGACACAACTTTTTTCTTTTTCCCTGCTGATATTGGTTCGATTTCAACAGCCACAATGTTTGCCAATGTTGGTAGCTCAAACATGTCGAAGTCTGGCAAGTTTAGTGTTGGTGGTGTAGAGGGCCTGGTGGTTAATGACACTGAAGTTTCCGATTCGGTGGAAGAATCTGGGCATGGGAATGATACGAATCAACAGACCTGGGTGTATGGATTAGCACTTGGTAATGACAGCAGTTCTACCGGGGAGTCCATGTTAGAGAATAATGTAACACTTGGAAAGAGTTATCCCGTGGGAACGGGTGGAAATGAAGATGGAGTTTTTTTCCGGGGAAAGACTCGAGATTTTAAAAATGGTTACTTACAGACAGCTGATGAATCAGCTGACAGTTACAGGGAAGACAACGAGCCTGGAATCAGCTTTGGTTTAAAGGTTAATGAAGAAATTGAGGTTCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

207

Amino Acids

22.35

Weight (kDa)

4.3

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014831)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04870
rosa_laevigata	RLG00000001366 RLG00000005704 RLG00000014469 RLG00000029408 RLG00000032893
rosa_multiflora	Rmu_sc0010439.1_g000010 Rmu_sc0012364.1_g000001
rosa_samantha	Rh1AG021900 Rh1BG031600 Rh2BG062100 Rh2CG064000 Rh2DG062400 Rh3CG081500 Rh5BG107600 Rh5DG198600 Rh7DG166800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	90
AciI	CCGC	2 cut(s)	114, 119
AcuI	CTGAAG	1 cut(s)	324
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	207
AjnI	CCWGG	3 cut(s)	285, 359, 568
AluBI	AGCT	6 cut(s)	22, 154, 237, 530, 542, 579
AluI	AGCT	6 cut(s)	22, 154, 237, 530, 542, 579
Alw26I	GTCTC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	90
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	53, 56
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	2 cut(s)	403, 488
AvaI	CYCGRG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	40, 43
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	3 cut(s)	287, 361, 570
BciVI	GTATCC	2 cut(s)	40, 148
BcnI	CCSGG	2 cut(s)	403, 488
BcoDI	GTCTC	1 cut(s)	88
BfuI	GTATCC	2 cut(s)	40, 148
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	5 cut(s)	287, 361, 403, 488, 570
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	5 cut(s)	287, 361, 403, 488, 570
BmrI	ACTGGG	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	564
BpuMI	CCSGG	2 cut(s)	403, 488
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	360, 402, 450, 487
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bse1I	ACTGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	348
BseAI	TCCGGA	1 cut(s)	90
BseBI	CCWGG	3 cut(s)	287, 361, 570
BseDI	CCNNGG	4 cut(s)	360, 402, 450, 487
BseJI	GATNNNNATC	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	40, 43
BshFI	GGCC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	3 cut(s)	91, 402, 487
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	498
Bsp13I	TCCGGA	1 cut(s)	90
BspACI	CCGC	2 cut(s)	114, 119
BspANI	GGCC	1 cut(s)	285
BspEI	TCCGGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	612
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	4 cut(s)	360, 402, 450, 487
Bst2UI	CCWGG	3 cut(s)	287, 361, 570
Bst4CI	ACNGT	1 cut(s)	548
BstDSI	CCRYGG	1 cut(s)	450
BstMAI	GTCTC	1 cut(s)	88
BstNI	CCWGG	3 cut(s)	287, 361, 570
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	5 cut(s)	285, 359, 401, 486, 568
BstV1I	GCAGC	2 cut(s)	40, 43
BstV2I	GAAGAC	1 cut(s)	564
BsuI	GTATCC	2 cut(s)	40, 148
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	149, 300
Cfr13I	GGNCC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	3 cut(s)	244, 335, 412
CviJI	RGCY	9 cut(s)	22, 154, 212, 237, 285, 530, 542, 568, 579
CviKI_1	RGCY	9 cut(s)	22, 154, 212, 237, 285, 530, 542, 568, 579
DraI	TTTAAA	2 cut(s)	508, 588
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	285, 359, 568
FaeI	CATG	3 cut(s)	247, 338, 415
FaiI	YATR	9 cut(s)	6, 39, 44, 162, 245, 336, 369, 413, 619
FatI	CATG	3 cut(s)	243, 334, 411
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	54, 57
Fsp4HI	GCNGC	2 cut(s)	54, 57
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	3 cut(s)	91, 402, 487
Hin1II	CATG	3 cut(s)	247, 338, 415
HinfI	GANTC	8 cut(s)	87, 314, 326, 349, 407, 496, 536, 573
HpaII	CCGG	3 cut(s)	91, 402, 487
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	91, 500
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	247, 338, 415
Kpn2I	TCCGGA	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	40, 43
MaeIII	GTNAC	3 cut(s)	427, 515, 548
MboII	GAAGA	4 cut(s)	335, 482, 569, 611
MluCI	AATT	1 cut(s)	603
MlyI	GAGTC	2 cut(s)	416, 490
MnlI	CCTC	2 cut(s)	274, 601
MroI	TCCGGA	1 cut(s)	90
MseI	TTAA	5 cut(s)	104, 294, 507, 587, 594
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	3 cut(s)	22, 530, 542
MspI	CCGG	3 cut(s)	91, 402, 487
MspR9I	CCNGG	5 cut(s)	287, 361, 403, 488, 570
MvaI	CCWGG	3 cut(s)	287, 361, 570
NciI	CCSGG	2 cut(s)	403, 488
NlaIII	CATG	3 cut(s)	247, 338, 415
NlaIV	GGNNCC	1 cut(s)	612
NspI	RCATGY	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	498
PciI	ACATGT	1 cut(s)	243
PfeI	GAWTC	6 cut(s)	87, 314, 326, 349, 536, 573
PkrI	GCNGC	2 cut(s)	55, 58
PleI	GAGTC	2 cut(s)	415, 490
PpsI	GAGTC	2 cut(s)	415, 490
PscI	ACATGT	1 cut(s)	243
Psp6I	CCWGG	3 cut(s)	285, 359, 568
PspGI	CCWGG	3 cut(s)	285, 359, 568
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	1 cut(s)	283
PvuII	CAGCTG	3 cut(s)	22, 530, 542
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	104, 294, 507, 587, 594
SatI	GCNGC	2 cut(s)	54, 57
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	416, 490
ScrFI	CCNGG	5 cut(s)	287, 361, 403, 488, 570
SetI	ASST	9 cut(s)	24, 156, 239, 362, 532, 544, 581, 594, 612
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	1 cut(s)	603
SsiI	CCGC	2 cut(s)	114, 119
StyD4I	CCNGG	5 cut(s)	285, 359, 401, 486, 568
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	4 cut(s)	61, 200, 248, 499
TasI	AATT	1 cut(s)	603
TfiI	GAWTC	6 cut(s)	87, 314, 326, 349, 536, 573
Tru1I	TTAA	5 cut(s)	104, 294, 507, 587, 594
Tru9I	TTAA	5 cut(s)	104, 294, 507, 587, 594
TscAI	CASTG	2 cut(s)	149, 307
TseI	GCWGC	2 cut(s)	53, 56
TspDTI	ATGAA	3 cut(s)	483, 549, 612
TspRI	CASTG	2 cut(s)	149, 307
XceI	RCATGY	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.