Rh5DG198600

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
22127079 .. 22127429
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG198600.1

Sequence Viewer

Length: 351 bp
ATGGGTGTTGCTGCTCTAACCCAGAGACTATGCAACTTTGAAATCCGGAGACTGGTGTTGATAATCGGTGTGGCGGTTGTTATTGTAGTTGTGAATCAGTGTTTTGAGCTTCCCTTTGGTAAAAATGTTTACTTTTCACCTGCGGATACTGGTTCAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTAGTTCAAATGATTCGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATGATACTGGTGGTTTAGAGTTAGAGGAGTTTGAGTTGGAGAAAGATACAAGTAATGTAACTGTTGAGAAGAGTTTTTCAGCTTTTGACTTAGGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.28

Weight (kDa)

4.25

Isoelectric Point (pI)

19.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 2 cut(s) 74, 143
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 41, 195
AhlI ACTAGT 1 cut(s) 188
AluBI AGCT 3 cut(s) 109, 158, 332
AluI AGCT 3 cut(s) 109, 158, 332
Alw26I GTCTC 2 cut(s) 19, 43
Aor13HI TCCGGA 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 129
BanI GGYRCC 1 cut(s) 344
BciVI GTATCC 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 19, 43
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 148
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 3 cut(s) 57, 154, 262
BseAI TCCGGA 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 3 cut(s) 57, 154, 262
BseRI GAGGAG 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 19, 43
Bsp13I TCCGGA 1 cut(s) 45
BspACI CCGC 2 cut(s) 74, 143
BspEI TCCGGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 344
BsrI ACTGG 3 cut(s) 57, 154, 262
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 340
BstMAI GTCTC 2 cut(s) 19, 43
BsuI GTATCC 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 104, 168
BveI ACCTGC 1 cut(s) 148
CviJI RGCY 3 cut(s) 109, 158, 332
CviKI_1 RGCY 3 cut(s) 109, 158, 332
DdeI CTNAG 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 144
FaiI YATR 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 12
HapII CCGG 1 cut(s) 46
HinfI GANTC 3 cut(s) 94, 200, 206
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 340
Kpn2I TCCGGA 1 cut(s) 45
LpnPI CCDG 7 cut(s) 35, 38, 59, 135, 153, 195, 243
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 3 cut(s) 166, 184, 307
MboII GAAGA 1 cut(s) 331
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 1 cut(s) 268
MroI TCCGGA 1 cut(s) 45
MseI TTAA 1 cut(s) 249
MspI CCGG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 94, 200
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 12
SchI GAGTC 1 cut(s) 215
SetI ASST 5 cut(s) 111, 142, 160, 334, 346
SgeI CNNG 9 cut(s) 34, 58, 65, 152, 162, 201, 222, 270, 312
SpeI ACTAGT 1 cut(s) 188
SsiI CCGC 2 cut(s) 74, 143
SspMI CTAG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 313
TfiI GAWTC 2 cut(s) 94, 200
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 104, 168
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 166
TspRI CASTG 2 cut(s) 104, 168
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.