RLG00000001366

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014831
Physical Location & Seq
Reverse (-)
14729654 .. 14730326
673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001366

Sequence Viewer

Length: 456 bp
ATGATCTACTTTGGACCAGCTCGACCAGATGCAACTACTTTGGAGTCGGAGCTCCGAACACCGACTAGAAACGTAACGAGGTCTCTTCTAGGCTCACCCAAAACCCATTTCAAACTGTTTGAATTGTACATGCAAAATGGTGTTGCTGCTCTAACCCAGAGACTATGCAACTTTGAAATCTGGAGACTGGTGTTGATAATCGGTGTGGCGGTTGTTATTGTAGTTGTGAATCAGTGTTTTGAGCTTCCCTTTGGTAAAAATGTTTACTTTTCACCTGCTGATACTGGTTCAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTAGTTCAAATGATTCGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATGATACTGGTGGTTTAGAGTTAGAGGAGTTTGAGTTGGAGAAAGATGCAAGTAATAATTTAATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

152

Amino Acids

16.46

Weight (kDa)

4.71

Isoelectric Point (pI)

25.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
AciI CCGC 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 4 cut(s) 112, 122, 176, 330
AhlI ACTAGT 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 20, 52, 244, 293
AluI AGCT 4 cut(s) 20, 52, 244, 293
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 87, 154, 178
ApeKI GCWGC 1 cut(s) 146
AseI ATTAAT 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 87, 264
AvaII GGWCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 87, 154, 178
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 3 cut(s) 66, 89, 324
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmsI GCATC 2 cut(s) 19, 421
BpmI CTGGAG 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bse1I ACTGG 3 cut(s) 192, 289, 397
BseNI ACTGG 3 cut(s) 192, 289, 397
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 54
BsmAI GTCTC 3 cut(s) 87, 154, 178
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 54
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 3 cut(s) 192, 289, 397
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 126
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 3 cut(s) 87, 154, 178
BstMBI GATC 1 cut(s) 3
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 239, 303
BveI ACCTGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 130
CviJI RGCY 5 cut(s) 20, 52, 93, 244, 293
CviKI_1 RGCY 5 cut(s) 20, 52, 93, 244, 293
CviQI GTAC 1 cut(s) 127
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 133
FaiI YATR 2 cut(s) 131, 166
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 3 cut(s) 66, 89, 324
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 202
Hin1II CATG 1 cut(s) 133
HinfI GANTC 4 cut(s) 44, 229, 335, 341
HphI GGTGA 2 cut(s) 87, 264
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 49, 56, 340
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 32, 133, 168, 434
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 49, 57
LpnPI CCDG 9 cut(s) 30, 39, 166, 170, 173, 270, 288, 330, 378
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 2 cut(s) 19, 421
MaeI CTAG 3 cut(s) 66, 89, 324
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 73, 301, 319
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 4 cut(s) 122, 442, 447, 451
MlyI GAGTC 2 cut(s) 53, 350
MmeI TCCRAC 2 cut(s) 27, 402
MnlI CCTC 2 cut(s) 72, 403
MseI TTAA 4 cut(s) 384, 446, 450, 454
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 1 cut(s) 133
PacI TTAATTAA 2 cut(s) 450, 454
PaqCI CACCTGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 229, 335
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 2 cut(s) 52, 349
PpsI GAGTC 2 cut(s) 52, 349
PshBI ATTAAT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 384, 446, 450, 454
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 53, 350
SduI GDGCHC 1 cut(s) 54
SetI ASST 7 cut(s) 22, 54, 75, 83, 246, 277, 295
SfaNI GCATC 2 cut(s) 19, 421
SinI GGWCC 1 cut(s) 14
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 4 cut(s) 122, 442, 447, 451
SsiI CCGC 1 cut(s) 209
SspMI CTAG 3 cut(s) 66, 89, 324
SstI GAGCTC 1 cut(s) 54
TaaI ACNGT 1 cut(s) 117
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 22
TasI AATT 4 cut(s) 122, 442, 447, 451
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 2 cut(s) 229, 335
Tru1I TTAA 4 cut(s) 384, 446, 450, 454
Tru9I TTAA 4 cut(s) 384, 446, 450, 454
TscAI CASTG 2 cut(s) 239, 303
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 301
TspRI CASTG 2 cut(s) 239, 303
VpaK11BI GGWCC 1 cut(s) 14
VspI ATTAAT 1 cut(s) 450
XceI RCATGY 1 cut(s) 133
XspI CTAG 3 cut(s) 66, 89, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.