Rh5BG107600

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014831
Physical Location & Seq
Forward (+)
10034674 .. 10041936
7263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG107600.1

Sequence Viewer

Length: 552 bp
ATGGCAGGTCAGAGGAATAGTTACGGAAAGCGTTCTCATTCTCAGTCCGATTACTCCGACAACGGCAGAGGATGCGGCGGCAAGAGTAGAAACCCCAGCGATGAGAAAATCCTTTTCATAAACAGCCCACCTCGGATTCTTAGCACCGACTTCGTCTTCGGCATCACCGGCGTCGGACCAGCTCAACCAGATGCAACTACTTTGGAGTCGGAGCTCCGAAGACCGACGAGAAACGTAACGAGGTCTCTTCTGGGCTCACCCAAAACCCATTTCAAGCTGTTTGAATTGTACATACAAAAATGGTGTTTTGAGCTTCCCTTTGGTAAAAATGTTTACTTTTCTCCTGCTGATAATGGTTCAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTAGTTCAAATGATTTGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATGATACTGGTGGTTTAGAGTTAGAGGAGTTTGAGTTGGAGAAAGATGCAAAAATAGAAAAATATGAGAGCAATATTTTCGTTTTCTCCCCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

183

Amino Acids

20.13

Weight (kDa)

5.76

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 78
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 3 cut(s) 274, 284, 399
AhlI ACTAGT 1 cut(s) 392
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 5 cut(s) 182, 214, 277, 313, 362
AluI AGCT 5 cut(s) 182, 214, 277, 313, 362
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 249
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
Asp700I GAANNNNTTC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 157, 249
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 2 cut(s) 216, 257
BbsI GAAGAC 2 cut(s) 148, 226
Bbv12I GWGCWC 1 cut(s) 216
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 514, 548
BcoDI GTCTC 1 cut(s) 249
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 1 cut(s) 393
BisI GCNGC 2 cut(s) 76, 79
BlsI GCNGC 2 cut(s) 77, 80
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmsI GCATC 4 cut(s) 62, 171, 181, 490
BpiI GAAGAC 2 cut(s) 148, 226
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 494
BseYI CCCAGC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 216, 257
Bsp1407I TGTACA 1 cut(s) 288
BspACI CCGC 2 cut(s) 75, 78
BspCNI CTCAG 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 131
BssNI GRCGYC 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 42, 140
BstF5I GGATG 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 72, 168
BstV2I GAAGAC 2 cut(s) 148, 226
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 7 cut(s) 126, 182, 214, 255, 277, 313, 362
CviKI_1 RGCY 7 cut(s) 126, 182, 214, 255, 277, 313, 362
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 42, 140
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 216, 257
Eco31I GGTCTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 348
EcoICRI GAGCTC 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 216, 257
FaiI YATR 3 cut(s) 119, 293, 519
Fnu4HI GCNGC 2 cut(s) 76, 79
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 2 cut(s) 216, 257
Fsp4HI GCNGC 2 cut(s) 76, 79
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 76, 79
GsaI CCCAGC 1 cut(s) 99
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 171
HinfI GANTC 3 cut(s) 136, 206, 410
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 157, 249
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 7 cut(s) 12, 49, 58, 135, 176, 211, 218
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 2 cut(s) 176, 229
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 194, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 168
HpyF3I CTNAG 2 cut(s) 42, 140
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 211, 219
LpnPI CCDG 8 cut(s) 109, 181, 192, 201, 236, 357, 399, 447
LweI GCATC 4 cut(s) 62, 171, 181, 490
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 4 cut(s) 20, 235, 370, 388
MboII GAAGA 3 cut(s) 148, 231, 239
MhlI GDGCHC 2 cut(s) 216, 257
MluCI AATT 1 cut(s) 284
MlyI GAGTC 2 cut(s) 215, 419
MmeI TCCRAC 4 cut(s) 81, 154, 189, 471
MnlI CCTC 5 cut(s) 6, 62, 141, 234, 472
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 1 cut(s) 453
MspI CCGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 72, 168
NmuCI GTSAC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 136
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 77, 80
PleI GAGTC 2 cut(s) 214, 418
PpsI GAGTC 2 cut(s) 214, 418
Psp124BI GAGCTC 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 2 cut(s) 76, 79
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 215, 419
SduI GDGCHC 2 cut(s) 216, 257
SetI ASST 9 cut(s) 10, 133, 184, 216, 237, 245, 279, 315, 364
SfaNI GCATC 4 cut(s) 62, 171, 181, 490
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 1 cut(s) 284
SsiI CCGC 2 cut(s) 75, 78
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 216
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 547
TaqII GACCGA 1 cut(s) 238
TasI AATT 1 cut(s) 284
TatI WGTACW 1 cut(s) 288
TauI GCSGC 2 cut(s) 78, 81
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 372
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.