Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014831

Physical Location & Seq

Genomic Coordinates Reverse (-)

3990884 .. 4015548

Gene Structure 24665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG021900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGGTGTTTTTGCTCTAACCCAGAGACTATGCAACTTTGAAATCCGGAGACTGGTGTTGATAATCGGTGTGGCGGTTGTTATTGTAGTTGTGAATCAGTGTTTTGAGCTTCCCTTTGGTAAAAATGTTTACTTTTCACCTGCGGATACTGGTTCAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTAGTTCAAATGATTCGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATGATACTGGTGGTTTAGAGTTAGAGGAGTTTGAGTTGGAGAAAGATACAAGATGTGACATAGCATATGAGAATGATGAACCAGTAGCTGATGATATGGTTGCTACGGGTAATTCAACTCCAGTCTTGTCGCTCCGATTACCAGGTTTAGCCTCGTTGATGCTAAAAAAGAATCCCCAATTTGCCTGGCAACGTGATAAAGAGGGACAGACAGCCTTGCATTTGTTGGCTATAAAGCCTTCAGCATTTACCTCTAAAACTCCTCAAGGAATATGTATGAAGGTCAAATATTTGACATCAAAAATATGCATCAGACTCACACAATGTCTTACCTCGAGAATACTAAAGATATGTGCAGAGCTTGCAAGTGAATTAGATAAGAATGATCATCAGTTAACCACAGTACTGGATTTATTAGCTCATGAAAAATCTTCGGTACCCACCAAGAAAAAAGAAAAAAATCCTTCCATATTACCCACCAAGAAAGGTAAAAATGCTTCGGTACCTGTCACTGACAGTTGGGGAATACGGAAAGGGCTTTCATCACCTTGTAGCCGATTACGGAAAAAGCTTGAAAGATCGTTTGCTTTGAAAGTGCTGGAAACGTATCCAGAGCTTCTTCTAGAACTGGATGGGGATAATTTAAGAGTTGCCTTGAGCAATTTATTGAATCAAGAGCATGCAACATCTGCCTCTGGACTACTGCGAGAAATACTCGAGCGAAGGTTTCCTGTCTCAATCTTGAAACATGTTTTAAGTTCCATATTTCCTAAATTGAGTGTTGGAATTGCATCCATGTCCAAGCTTGTTGTTCATTTGAACTCCAAACAAAGCGCAACCTTGCCAATGTTGCACATGGAAAATGAGGAAAGTGAGGGCACTTGCGATGGAATTCAACCTATAATTTGTGTGGCAAATACGCACATATCTGCAAATCCAAAGTTCCCAGATGTAAAATTGTTCCAGGTTGCGGACCTGATTACTCGACTGGACAAAATTGCCGAGATGAAAATTCCTCTGTTGGTTTGTGGAGATTTCAACTCTCTTCCTCTGAGTGAGCCTCATAAGTTCATAACTGCTGGCAGAGTCGACATTAATCTTCCCAACGATACTGATCCATTTGGCATATGTCAGCATCTAAAGCTTCACCATTCACTTCCACTGGAACTTGTGGTTAGATGCGATGCTGCTCTTAAAGCTTTATGCAAAAGAAAAGGTCTTGAAGTTGAGGAAGAAGATCCAGGTTCATATTCAAGAGCATCAAACTCTGTTTCTGAGCTTGTGATAGATGTTCAACTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

517

Amino Acids

56.72

Weight (kDa)

6.65

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014831)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04870
rosa_laevigata	RLG00000001366 RLG00000005704 RLG00000014469 RLG00000029408 RLG00000032893
rosa_multiflora	Rmu_sc0010439.1_g000010 Rmu_sc0012364.1_g000001
rosa_samantha	Rh1AG021900 Rh1BG031600 Rh2BG062100 Rh2CG064000 Rh2DG062400 Rh3CG081500 Rh5BG107600 Rh5DG198600 Rh7DG166800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	148
Acc65I	GGTACC	2 cut(s)	685, 751
AccB1I	GGYRCC	2 cut(s)	685, 751
AccI	GTMKAC	1 cut(s)	1338
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	3 cut(s)	74, 143, 1220
AclWI	GGATC	2 cut(s)	1358, 1481
AcsI	RAATTY	2 cut(s)	1140, 1260
AcuI	CTGAAG	2 cut(s)	144, 474
AfaI	GTAC	3 cut(s)	654, 687, 753
AfiI	CCNNNNNNNGG	2 cut(s)	52, 1219
AflIII	ACRYGT	1 cut(s)	997
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	4 cut(s)	391, 434, 1212, 1489
Alw26I	GTCTC	3 cut(s)	19, 43, 988
AlwI	GGATC	2 cut(s)	1358, 1481
AlwNI	CAGNNNCTG	1 cut(s)	338
Ama87I	CYCGRG	2 cut(s)	583, 965
Aor13HI	TCCGGA	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	1436
ApoI	RAATTY	2 cut(s)	1140, 1260
AseI	ATTAAT	1 cut(s)	1344
Asp718I	GGTACC	2 cut(s)	685, 751
AspLEI	GCGC	1 cut(s)	1085
AspS9I	GGNCC	1 cut(s)	1222
AsuHPI	GGTGA	3 cut(s)	129, 786, 1388
AvaI	CYCGRG	2 cut(s)	583, 965
AvaII	GGWCC	1 cut(s)	1222
BaeGI	GKGCMC	1 cut(s)	1130
BanI	GGYRCC	2 cut(s)	685, 751
BarI	GAAGNNNNNNTAC	2 cut(s)	730, 762
BbvI	GCAGC	1 cut(s)	1423
BccI	CCATC	2 cut(s)	875, 1130
BciT130I	CCWGG	4 cut(s)	393, 436, 1214, 1491
BciVI	GTATCC	2 cut(s)	139, 867
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	3 cut(s)	19, 43, 988
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	2 cut(s)	189, 872
BfuAI	ACCTGC	1 cut(s)	148
BfuI	GTATCC	2 cut(s)	139, 867
BisI	GCNGC	1 cut(s)	1437
BlsI	GCNGC	1 cut(s)	1438
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	4 cut(s)	393, 436, 1214, 1491
Bme18I	GGWCC	1 cut(s)	1222
BmeT110I	CYCGRG	2 cut(s)	583, 965
BmgT120I	GGNCC	1 cut(s)	1222
BmiI	GGNNCC	2 cut(s)	687, 753
BmrFI	CCNGG	4 cut(s)	393, 436, 1214, 1491
BmsI	GCATC	7 cut(s)	399, 567, 1049, 1393, 1418, 1423, 1517
BplI	GAGNNNNNCTC	4 cut(s)	948, 980, 1294, 1326
BpmI	CTGGAG	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	498, 925
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 1219
Bse1I	ACTGG	9 cut(s)	57, 154, 262, 332, 371, 660, 882, 1242, 1416
Bse8I	GATNNNNATC	1 cut(s)	1362
BseAI	TCCGGA	1 cut(s)	45
BseBI	CCWGG	4 cut(s)	393, 436, 1214, 1491
BseGI	GGATG	2 cut(s)	886, 1040
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	2 cut(s)	52, 1219
BseMII	CTCAG	2 cut(s)	1292, 1515
BseNI	ACTGG	9 cut(s)	57, 154, 262, 332, 371, 660, 882, 1242, 1416
BseRI	GAGGAG	2 cut(s)	290, 501
BseSI	GKGCMC	1 cut(s)	1130
BseXI	GCAGC	1 cut(s)	1423
BsgI	GTGCAG	1 cut(s)	624
BshNI	GGYRCC	2 cut(s)	685, 751
BsiHKCI	CYCGRG	2 cut(s)	583, 965
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	52, 1219
BsmAI	GTCTC	3 cut(s)	19, 43, 988
BsmFI	GGGAC	1 cut(s)	468
BsoBI	CYCGRG	2 cut(s)	583, 965
Bsp1286I	GDGCHC	1 cut(s)	1130
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	634, 827, 1363, 1486
BspACI	CCGC	3 cut(s)	74, 143, 1220
BspCNI	CTCAG	2 cut(s)	1293, 1516
BspEI	TCCGGA	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	687, 753
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	1358, 1481
BspT107I	GGYRCC	2 cut(s)	685, 751
BsrI	ACTGG	9 cut(s)	57, 154, 262, 332, 371, 660, 882, 1242, 1416
BssMI	GATC	4 cut(s)	634, 827, 1363, 1486
Bst2UI	CCWGG	4 cut(s)	393, 436, 1214, 1491
Bst4CI	ACNGT	2 cut(s)	652, 767
Bst6I	CTCTTC	1 cut(s)	1299
BstAPI	GCANNNNNTGC	2 cut(s)	611, 938
BstC8I	GCNNGC	3 cut(s)	612, 930, 1330
BstDEI	CTNAG	2 cut(s)	1301, 1524
BstF5I	GGATG	2 cut(s)	886, 1040
BstHHI	GCGC	1 cut(s)	1085
BstKTI	GATC	4 cut(s)	637, 830, 1366, 1489
BstMAI	GTCTC	3 cut(s)	19, 43, 988
BstMBI	GATC	4 cut(s)	634, 827, 1363, 1486
BstMWI	GCNNNNNNNGC	5 cut(s)	611, 938, 1099, 1390, 1445
BstNI	CCWGG	4 cut(s)	393, 436, 1214, 1491
BstNSI	RCATGY	2 cut(s)	932, 1001
BstSCI	CCNGG	4 cut(s)	391, 434, 1212, 1489
BstSLI	GKGCMC	1 cut(s)	1130
BstV1I	GCAGC	1 cut(s)	1423
BstX2I	RGATCY	1 cut(s)	1486
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	1486
BsuI	GTATCC	2 cut(s)	139, 867
BtgZI	GCGATG	2 cut(s)	1149, 1446
BtsCI	GGATG	2 cut(s)	886, 1040
BtsIMutI	CAGTG	4 cut(s)	104, 168, 759, 1409
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	612, 930, 1330
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	1085
Cfr13I	GGNCC	1 cut(s)	1222
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	3 cut(s)	653, 686, 752
CviAII	CATG	5 cut(s)	671, 929, 998, 1045, 1105
CviQI	GTAC	3 cut(s)	653, 686, 752
DdeI	CTNAG	2 cut(s)	1301, 1524
DpnI	GATC	4 cut(s)	636, 829, 1365, 1488
DpnII	GATC	4 cut(s)	634, 827, 1363, 1486
Eam1104I	CTCTTC	1 cut(s)	1299
EarI	CTCTTC	1 cut(s)	1299
Eco47I	GGWCC	1 cut(s)	1222
Eco57I	CTGAAG	2 cut(s)	144, 474
Eco88I	CYCGRG	2 cut(s)	583, 965
EcoRI	GAATTC	1 cut(s)	1140
EcoRII	CCWGG	4 cut(s)	391, 434, 1212, 1489
EcoT22I	ATGCAT	1 cut(s)	560
FaeI	CATG	5 cut(s)	674, 932, 1001, 1048, 1108
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	5 cut(s)	670, 928, 997, 1044, 1104
FauNDI	CATATG	2 cut(s)	316, 1376
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	1338
Fnu4HI	GCNGC	1 cut(s)	1437
FokI	GGATG	2 cut(s)	893, 1027
Fsp4HI	GCNGC	1 cut(s)	1437
FspBI	CTAG	2 cut(s)	189, 872
GlaI	GCGC	1 cut(s)	1084
GluI	GCNGC	1 cut(s)	1437
GsuI	CTGGAG	1 cut(s)	354
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	1085
Hin1II	CATG	5 cut(s)	674, 932, 1001, 1048, 1108
Hin6I	GCGC	1 cut(s)	1083
HinP1I	GCGC	1 cut(s)	1083
HincII	GTYRAC	2 cut(s)	645, 1339
HindII	GTYRAC	2 cut(s)	645, 1339
HindIII	AAGCTT	4 cut(s)	818, 1052, 1391, 1446
HinfI	GANTC	7 cut(s)	94, 200, 206, 421, 564, 919, 1335
HpaI	GTTAAC	1 cut(s)	645
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	3 cut(s)	129, 786, 1388
Hpy166II	GTNNAC	3 cut(s)	130, 645, 1339
Hpy188I	TCNGA	5 cut(s)	205, 386, 563, 1302, 1525
Hpy8I	GTNNAC	3 cut(s)	130, 645, 1339
HpyAV	CCTTC	4 cut(s)	498, 523, 723, 966
HpyCH4III	ACNGT	2 cut(s)	652, 767
HpyCH4IV	ACGT	2 cut(s)	442, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	611, 938, 1099, 1390, 1445
HpyF3I	CTNAG	2 cut(s)	1301, 1524
HpySE526I	ACGT	2 cut(s)	442, 854
Hsp92II	CATG	5 cut(s)	674, 932, 1001, 1048, 1108
HspAI	GCGC	1 cut(s)	1083
Kpn2I	TCCGGA	1 cut(s)	45
KpnI	GGTACC	2 cut(s)	689, 755
Ksp22I	TGATCA	1 cut(s)	634
KspAI	GTTAAC	1 cut(s)	645
Kzo9I	GATC	4 cut(s)	634, 827, 1363, 1486
LmnI	GCTCC	1 cut(s)	387
Lsp1109I	GCAGC	1 cut(s)	1423
LweI	GCATC	7 cut(s)	399, 567, 1049, 1393, 1418, 1423, 1517
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	2 cut(s)	189, 872
MaeII	ACGT	2 cut(s)	442, 854
MaeIII	GTNAC	4 cut(s)	166, 184, 305, 757
MalI	GATC	4 cut(s)	636, 829, 1365, 1488
MboI	GATC	4 cut(s)	634, 827, 1363, 1486
MboII	GAAGA	6 cut(s)	672, 860, 1286, 1340, 1493, 1496
MflI	RGATCY	1 cut(s)	1486
MhlI	GDGCHC	1 cut(s)	1130
MlyI	GAGTC	3 cut(s)	215, 558, 1344
MmeI	TCCRAC	2 cut(s)	267, 1012
Mph1103I	ATGCAT	1 cut(s)	560
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	6 cut(s)	249, 644, 893, 1004, 1344, 1443
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	4 cut(s)	393, 436, 1214, 1491
MvaI	CCWGG	4 cut(s)	393, 436, 1214, 1491
MwoI	GCNNNNNNNGC	5 cut(s)	611, 938, 1099, 1390, 1445
NdeI	CATATG	2 cut(s)	316, 1376
NdeII	GATC	4 cut(s)	634, 827, 1363, 1486
NlaIII	CATG	5 cut(s)	674, 932, 1001, 1048, 1108
NlaIV	GGNNCC	2 cut(s)	687, 753
NmeAIII	GCCGAG	1 cut(s)	1276
NmuCI	GTSAC	3 cut(s)	166, 305, 757
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	2 cut(s)	932, 1001
PaeI	GCATGC	1 cut(s)	932
PaeR7I	CTCGAG	2 cut(s)	583, 965
PagI	TCATGA	1 cut(s)	670
PaqCI	CACCTGC	1 cut(s)	148
PciI	ACATGT	1 cut(s)	997
PfeI	GAWTC	4 cut(s)	94, 200, 421, 919
PkrI	GCNGC	1 cut(s)	1438
PleI	GAGTC	3 cut(s)	214, 558, 1343
PpsI	GAGTC	3 cut(s)	214, 558, 1343
PscI	ACATGT	1 cut(s)	997
PshBI	ATTAAT	1 cut(s)	1344
Psp6I	CCWGG	4 cut(s)	391, 434, 1212, 1489
PspGI	CCWGG	4 cut(s)	391, 434, 1212, 1489
PspN4I	GGNNCC	2 cut(s)	687, 753
PspPI	GGNCC	1 cut(s)	1222
PspXI	VCTCGAGB	1 cut(s)	965
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	1486
RsaI	GTAC	3 cut(s)	654, 687, 753
RsaNI	GTAC	3 cut(s)	653, 686, 752
SalI	GTCGAC	1 cut(s)	1337
SaqAI	TTAA	6 cut(s)	249, 644, 893, 1004, 1344, 1443
SatI	GCNGC	1 cut(s)	1437
Sau3AI	GATC	4 cut(s)	634, 827, 1363, 1486
Sau96I	GGNCC	1 cut(s)	1222
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	3 cut(s)	215, 558, 1344
ScrFI	CCNGG	4 cut(s)	393, 436, 1214, 1491
SduI	GDGCHC	1 cut(s)	1130
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	7 cut(s)	399, 567, 1049, 1393, 1418, 1423, 1517
Sfr274I	CTCGAG	2 cut(s)	583, 965
SinI	GGWCC	1 cut(s)	1222
SlaI	CTCGAG	2 cut(s)	583, 965
SmlI	CTYRAG	4 cut(s)	513, 583, 904, 965
SmoI	CTYRAG	4 cut(s)	513, 583, 904, 965
SpeI	ACTAGT	1 cut(s)	188
SphI	GCATGC	1 cut(s)	932
SsiI	CCGC	3 cut(s)	74, 143, 1220
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	2 cut(s)	189, 872
StyD4I	CCNGG	4 cut(s)	391, 434, 1212, 1489
TaaI	ACNGT	2 cut(s)	652, 767
TaiI	ACGT	2 cut(s)	445, 857
TaqI	TCGA	4 cut(s)	584, 966, 1234, 1338
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	4 cut(s)	94, 200, 421, 919
Tru1I	TTAA	6 cut(s)	249, 644, 893, 1004, 1344, 1443
Tru9I	TTAA	6 cut(s)	249, 644, 893, 1004, 1344, 1443
TscAI	CASTG	4 cut(s)	104, 168, 766, 1416
TseFI	GTSAC	3 cut(s)	166, 305, 757
TseI	GCWGC	1 cut(s)	1436
Tsp45I	GTSAC	3 cut(s)	166, 305, 757
TspDTI	ATGAA	8 cut(s)	342, 542, 687, 780, 1052, 1271, 1309, 1485
TspGWI	ACGGA	2 cut(s)	793, 826
TspRI	CASTG	4 cut(s)	104, 168, 766, 1416
VpaK11BI	GGWCC	1 cut(s)	1222
VspI	ATTAAT	1 cut(s)	1344
XapI	RAATTY	2 cut(s)	1140, 1260
XbaI	TCTAGA	1 cut(s)	871
XceI	RCATGY	2 cut(s)	932, 1001
XhoI	CTCGAG	2 cut(s)	583, 965
XmiI	GTMKAC	1 cut(s)	1338
XspI	CTAG	2 cut(s)	189, 872
ZrmI	AGTACT	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.