Rh2BG062100

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014831
Physical Location & Seq
Forward (+)
4694129 .. 4694942
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG062100.1

Sequence Viewer

Length: 738 bp
ATGGGTGTTGCTGCTCTAACCCAGAGACTATGCAACTTTGAAATCCGGAGACTGGTGTTGATAATCGGTGTGGCGGTTGTTATTGTAGTTGTGAATCAATGTTTTGAGCTTCCTTATGGTAAAAGATTTTACTTTTCACCTACTGATACTGGTTCAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTGGTTCAAATGATTTGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATAATACTGGTGGTTTAGAGTTGGAGAAAGATGCAAGTAATGTAACTGTTGAGAAGAGTTTTCCGGTGGGAATCAATACAAGTGAAGATGATATATCTAGTGGGGAAAAGACAATAGATTTTAGACATGATTCTGTACCGAGGGACAGTAGAATAGGTGAGAGTTACAAGTTAGACAATGACTCTAAAACAAGCTCAGCGAGTGAATTTCAAAACGAAGCTGGGATTGTGTCGGTTGTATCTCAAGGAGCCGCTAGAAATAGTCCGGGAAACATAAATGCAGTTTCAAAGGGTAACTTCGAACAAACTACTGATATTCAAGTGGAGGATAAGAAGACTGAGCCATTGCAATCTGTTTCAGTCACCTTGCATGATAATTCGTCAATGACTAGTATTTCAACACTAAGGAAGTGGAATCCACGACCAACATCAATATCCCAGATGAATTTGTTATTGCTTCGAACCCCCATTTCTTCTAGTTCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

245

Amino Acids

26.35

Weight (kDa)

5.04

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 2 cut(s) 74, 501
AcsI RAATTY 2 cut(s) 455, 694
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 6 cut(s) 41, 195, 461, 537, 569, 648
AhlI ACTAGT 1 cut(s) 638
AluBI AGCT 4 cut(s) 109, 158, 444, 470
AluI AGCT 4 cut(s) 109, 158, 444, 470
Alw26I GTCTC 2 cut(s) 19, 43
Aor13HI TCCGGA 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 455, 694
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 129, 419, 604
AsuII TTCGAA 2 cut(s) 549, 709
BbsI GAAGAC 1 cut(s) 590
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 19, 43
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 4 cut(s) 348, 504, 639, 726
BisI GCNGC 2 cut(s) 12, 501
BlpI GCTNAGC 1 cut(s) 445
BlsI GCNGC 2 cut(s) 13, 502
Bme1390I CCNGG 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 590
Bpu1102I GCTNAGC 1 cut(s) 445
Bpu14I TTCGAA 2 cut(s) 549, 709
BpuEI CTTGAG 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 389
BsaWI WCCGGW 2 cut(s) 45, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 4 cut(s) 57, 154, 193, 262
Bse3DI GCAATG 1 cut(s) 593
BseAI TCCGGA 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 593
BseMII CTCAG 2 cut(s) 459, 579
BseNI ACTGG 4 cut(s) 57, 154, 193, 262
BseYI CCCAGC 1 cut(s) 470
BsiSI CCGG 3 cut(s) 46, 314, 515
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 19, 43
BsmFI GGGAC 1 cut(s) 407
Bsp119I TTCGAA 2 cut(s) 549, 709
Bsp13I TCCGGA 1 cut(s) 45
Bsp1720I GCTNAGC 1 cut(s) 445
BspACI CCGC 2 cut(s) 74, 501
BspCNI CTCAG 2 cut(s) 458, 580
BspEI TCCGGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 499
BspT104I TTCGAA 2 cut(s) 549, 709
BsrDI GCAATG 1 cut(s) 593
BsrI ACTGG 4 cut(s) 57, 154, 193, 262
BssECI CCNNGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 298, 398
Bst6I CTCTTC 1 cut(s) 299
BstBI TTCGAA 2 cut(s) 549, 709
BstDEI CTNAG 3 cut(s) 445, 588, 653
BstMAI GTCTC 2 cut(s) 19, 43
BstSCI CCNGG 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 168
Csp6I GTAC 1 cut(s) 386
CviAII CATG 2 cut(s) 377, 620
CviJI RGCY 6 cut(s) 109, 158, 444, 470, 500, 592
CviKI_1 RGCY 6 cut(s) 109, 158, 444, 470, 500, 592
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 3 cut(s) 445, 588, 653
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 144
FaeI CATG 2 cut(s) 380, 623
FaiI YATR 7 cut(s) 31, 117, 344, 378, 524, 621, 734
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 376, 619
Fnu4HI GCNGC 2 cut(s) 12, 501
Fsp4HI GCNGC 2 cut(s) 12, 501
FspBI CTAG 4 cut(s) 348, 504, 639, 726
GluI GCNGC 2 cut(s) 12, 501
GsaI CCCAGC 1 cut(s) 474
HapII CCGG 3 cut(s) 46, 314, 515
Hin1II CATG 2 cut(s) 380, 623
HinfI GANTC 6 cut(s) 94, 206, 321, 380, 431, 664
HpaII CCGG 3 cut(s) 46, 314, 515
HphI GGTGA 3 cut(s) 129, 419, 604
Hpy188III TCNNGA 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 298, 398
HpyCH4V TGCA 5 cut(s) 33, 284, 530, 598, 619
HpyF3I CTNAG 3 cut(s) 445, 588, 653
Hsp92II CATG 2 cut(s) 380, 623
Kpn2I TCCGGA 1 cut(s) 45
LmnI GCTCC 1 cut(s) 497
LweI GCATC 1 cut(s) 271
MaeI CTAG 4 cut(s) 348, 504, 639, 726
MaeIII GTNAC 6 cut(s) 166, 184, 292, 413, 542, 610
MboII GAAGA 4 cut(s) 316, 347, 595, 714
MluCI AATT 3 cut(s) 455, 625, 694
MlyI GAGTC 2 cut(s) 215, 425
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 2 cut(s) 384, 568
MroI TCCGGA 1 cut(s) 45
MseI TTAA 1 cut(s) 249
MspI CCGG 3 cut(s) 46, 314, 515
MspR9I CCNGG 1 cut(s) 516
NciI CCSGG 1 cut(s) 516
NlaIII CATG 2 cut(s) 380, 623
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 2 cut(s) 166, 610
NspV TTCGAA 2 cut(s) 549, 709
PfeI GAWTC 4 cut(s) 94, 321, 380, 664
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 2 cut(s) 13, 502
PleI GAGTC 2 cut(s) 214, 425
PpsI GAGTC 2 cut(s) 214, 425
PspFI CCCAGC 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 499
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 12, 501
SchI GAGTC 2 cut(s) 215, 425
ScrFI CCNGG 1 cut(s) 516
SetI ASST 7 cut(s) 111, 142, 160, 409, 446, 472, 617
SfaNI GCATC 1 cut(s) 271
SfuI TTCGAA 2 cut(s) 549, 709
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
SpeI ACTAGT 1 cut(s) 638
Sse9I AATT 3 cut(s) 455, 625, 694
SsiI CCGC 2 cut(s) 74, 501
SspMI CTAG 4 cut(s) 348, 504, 639, 726
StyD4I CCNGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 298, 398
TaqI TCGA 2 cut(s) 549, 709
TasI AATT 3 cut(s) 455, 625, 694
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 4 cut(s) 94, 321, 380, 664
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 2 cut(s) 166, 610
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 166, 610
TspDTI ATGAA 1 cut(s) 707
TspRI CASTG 1 cut(s) 168
XapI RAATTY 2 cut(s) 455, 694
XspI CTAG 4 cut(s) 348, 504, 639, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.