Rh1BG031600

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
4267043 .. 4269330
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG031600.1

Sequence Viewer

Length: 315 bp
ATGGGTGTTGCTGCTCCAACCCAGAGACTATGCAACTTTGAAATCCGGAGACTGGTGTTGATAATCGGTGTGGCGGTTGTTATTGTAGTTGTGAATCAGTGTTTTGAGCTTCCCTTTGGTAAAAATGTTTACTTTTCACCTGCTGATACTGGTTTAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTAGTTCAAATGATTCGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATGATACTGGTGGTTTAGAGTTAGAGGAGTTTGAGTTGGAGAAAGATGCAAGTCAATTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.04

Weight (kDa)

4.25

Isoelectric Point (pI)

25.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 41, 195
AhlI ACTAGT 1 cut(s) 188
AluBI AGCT 2 cut(s) 109, 158
AluI AGCT 2 cut(s) 109, 158
Alw26I GTCTC 2 cut(s) 19, 43
Aor13HI TCCGGA 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 19, 43
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmsI GCATC 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 3 cut(s) 57, 154, 262
BseAI TCCGGA 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 3 cut(s) 57, 154, 262
BseRI GAGGAG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 19, 43
Bsp13I TCCGGA 1 cut(s) 45
BspACI CCGC 1 cut(s) 74
BspEI TCCGGA 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 148
BsrI ACTGG 3 cut(s) 57, 154, 262
BstMAI GTCTC 2 cut(s) 19, 43
BtsIMutI CAGTG 2 cut(s) 104, 168
BveI ACCTGC 1 cut(s) 148
CviJI RGCY 2 cut(s) 109, 158
CviKI_1 RGCY 2 cut(s) 109, 158
Eco57I CTGAAG 1 cut(s) 144
FaiI YATR 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 12
HapII CCGG 1 cut(s) 46
HinfI GANTC 3 cut(s) 94, 200, 206
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 33, 299
Kpn2I TCCGGA 1 cut(s) 45
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 7 cut(s) 35, 38, 59, 135, 153, 195, 243
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 166, 184
MfeI CAATTG 1 cut(s) 305
MluCI AATT 1 cut(s) 305
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 2 cut(s) 41, 267
MnlI CCTC 1 cut(s) 268
MroI TCCGGA 1 cut(s) 45
MseI TTAA 1 cut(s) 249
MspI CCGG 1 cut(s) 46
MunI CAATTG 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 94, 200
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 12
SchI GAGTC 1 cut(s) 215
SetI ASST 3 cut(s) 111, 142, 160
SfaNI GCATC 1 cut(s) 286
SgeI CNNG 8 cut(s) 34, 58, 65, 152, 162, 201, 222, 270
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 1 cut(s) 305
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 189
TasI AATT 1 cut(s) 305
TfiI GAWTC 2 cut(s) 94, 200
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 104, 168
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 166
TspRI CASTG 2 cut(s) 104, 168
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.