Rh2DG062400

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014831
Physical Location & Seq
Forward (+)
4576534 .. 4577780
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG062400.1

Sequence Viewer

Length: 912 bp
ATGGGTGTTGCTGCTCTAACCCAGAGACTATGCAACTTTGAAATCCGGAGACTAGTGTTGATAATCGGTGTGGCGGTTGTTATTGTAGTTGTGAATCAATGTTTTGAGCTTCCTTATGGTAAAAGATTTTACCTTTCACCTGCTGATACTGGTTCAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTGGTTCAAATGATTTGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATAATACTGGTGGTTTAGAGTTGGAGGAGTTTGAGTTGGAGAAAGATGCAAGTAATGTAACTGTTGAGAAGAGTTTTCCGGTGGGAATCAATACAAGTGAAGATGATATATCTAGTGGGGAAAAGACAATAGATTTTAGACATGATTCTGTACCGAGGGACAGTAGAATAGGTGAGAGTTACAAGTTAGACAATGACTCTAAAACAAGCTCAGCGAGTGAATTTCAAAACGAAGCTGGGATTGTGTCAGTTGTATCTCAAGGAGCCGCCAGAAATAGTCCGGGAAACATAAATGCAGTTTCAAAGGGTAACTTCGAACAAACTACTGATATTCAAGTGGAGGATAAGAAGACTGAGCCATTGCAATCTGTTTCAGTCACCTTGCATGATAATTCGTCAATGACTAGTATTTCAACACTAAGGAAGTGGAATCCACGACCAACATCAATATCCCAGATGAATTTGTTATTGCTTCGAACCCCCATTTCTTCTAGTTCTATGAACCCACGGCGGTATTCCACACGTGATCGTGAACTTCAATCTGTAAAACTGGAGCTTGAGAATGCTCCTATCATAAGGGACAATCCCGGGCTCAGTGCATCTATTTTCCGAAATCTTTCCAAATTTATAAGTTTGAAATGTAGGGGATCAAGTAATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

303

Amino Acids

32.98

Weight (kDa)

5.44

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 878
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 3 cut(s) 74, 516, 760
AclWI GGATC 1 cut(s) 904
AcsI RAATTY 3 cut(s) 470, 709, 872
AcuI CTGAAG 1 cut(s) 144
AcvI CACGTG 1 cut(s) 773
AfaI GTAC 1 cut(s) 402
AflIII ACRYGT 1 cut(s) 770
AgsI TTSAA 8 cut(s) 41, 195, 476, 552, 584, 663, 788, 886
AhlI ACTAGT 2 cut(s) 52, 653
AluBI AGCT 5 cut(s) 109, 158, 459, 485, 805
AluI AGCT 5 cut(s) 109, 158, 459, 485, 805
Alw26I GTCTC 2 cut(s) 19, 43
AlwI GGATC 1 cut(s) 904
Ama87I CYCGRG 1 cut(s) 836
Aor13HI TCCGGA 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 3 cut(s) 470, 709, 872
Asp700I GAANNNNTTC 1 cut(s) 865
AsuC2I CCSGG 3 cut(s) 531, 837, 838
AsuHPI GGTGA 3 cut(s) 129, 434, 619
AsuII TTCGAA 2 cut(s) 564, 724
AvaI CYCGRG 1 cut(s) 836
BanII GRGCYC 1 cut(s) 843
BbrPI CACGTG 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 605
BceAI ACGGC 1 cut(s) 773
BcnI CCSGG 3 cut(s) 531, 837, 838
BcoDI GTCTC 2 cut(s) 19, 43
BcuI ACTAGT 2 cut(s) 52, 653
BfaI CTAG 4 cut(s) 53, 363, 654, 741
BfmI CTRYAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 12, 516
BlpI GCTNAGC 1 cut(s) 460
BlsI GCNGC 2 cut(s) 13, 517
Bme1390I CCNGG 3 cut(s) 531, 837, 838
BmeT110I CYCGRG 1 cut(s) 836
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 3 cut(s) 531, 837, 838
BmsI GCATC 2 cut(s) 286, 857
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 821
Bpu1102I GCTNAGC 1 cut(s) 460
Bpu14I TTCGAA 2 cut(s) 564, 724
BpuEI CTTGAG 2 cut(s) 492, 827
BpuMI CCSGG 3 cut(s) 531, 837, 838
BsaAI YACGTR 1 cut(s) 773
BsaJI CCNNGG 3 cut(s) 404, 755, 836
BsaWI WCCGGW 2 cut(s) 45, 328
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bse1I ACTGG 4 cut(s) 154, 193, 262, 804
Bse3DI GCAATG 1 cut(s) 608
BseAI TCCGGA 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 404, 755, 836
BseMI GCAATG 1 cut(s) 608
BseMII CTCAG 3 cut(s) 474, 594, 856
BseNI ACTGG 4 cut(s) 154, 193, 262, 804
BseRI GAGGAG 1 cut(s) 290
BseYI CCCAGC 1 cut(s) 485
BsiHKCI CYCGRG 1 cut(s) 836
BsiSI CCGG 4 cut(s) 46, 329, 530, 837
BslFI GGGAC 2 cut(s) 422, 842
BsmAI GTCTC 2 cut(s) 19, 43
BsmFI GGGAC 2 cut(s) 422, 842
BsmI GAATGC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 836
Bsp119I TTCGAA 2 cut(s) 564, 724
Bsp1286I GDGCHC 1 cut(s) 843
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 2 cut(s) 775, 896
Bsp1720I GCTNAGC 1 cut(s) 460
BspACI CCGC 3 cut(s) 74, 516, 760
BspCNI CTCAG 3 cut(s) 473, 595, 855
BspEI TCCGGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 904
BspT104I TTCGAA 2 cut(s) 564, 724
BsrDI GCAATG 1 cut(s) 608
BsrI ACTGG 4 cut(s) 154, 193, 262, 804
BssECI CCNNGG 3 cut(s) 404, 755, 836
BssMI GATC 2 cut(s) 775, 896
Bst4CI ACNGT 2 cut(s) 313, 413
Bst6I CTCTTC 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 773
BstBI TTCGAA 2 cut(s) 564, 724
BstDEI CTNAG 4 cut(s) 460, 603, 668, 842
BstDSI CCRYGG 1 cut(s) 755
BstKTI GATC 2 cut(s) 778, 899
BstMAI GTCTC 2 cut(s) 19, 43
BstMBI GATC 2 cut(s) 775, 896
BstSCI CCNGG 3 cut(s) 529, 835, 836
BstSFI CTRYAG 1 cut(s) 908
BstV2I GAAGAC 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 755
BtsIMutI CAGTG 2 cut(s) 168, 850
BveI ACCTGC 1 cut(s) 148
Cfr9I CCCGGG 1 cut(s) 836
Csp6I GTAC 1 cut(s) 401
CviAII CATG 2 cut(s) 392, 635
CviJI RGCY 8 cut(s) 109, 158, 459, 485, 515, 607, 805, 841
CviKI_1 RGCY 8 cut(s) 109, 158, 459, 485, 515, 607, 805, 841
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 4 cut(s) 460, 603, 668, 842
DpnI GATC 2 cut(s) 777, 898
DpnII GATC 2 cut(s) 775, 896
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 843
Eco57I CTGAAG 1 cut(s) 144
Eco72I CACGTG 1 cut(s) 773
Eco88I CYCGRG 1 cut(s) 836
EcoT38I GRGCYC 1 cut(s) 843
FaeI CATG 2 cut(s) 395, 638
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 2 cut(s) 422, 842
FatI CATG 2 cut(s) 391, 634
Fnu4HI GCNGC 2 cut(s) 12, 516
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 2 cut(s) 12, 516
FspBI CTAG 4 cut(s) 53, 363, 654, 741
GluI GCNGC 2 cut(s) 12, 516
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 821
HapII CCGG 4 cut(s) 46, 329, 530, 837
Hin1II CATG 2 cut(s) 395, 638
HinfI GANTC 6 cut(s) 94, 206, 336, 395, 446, 679
HpaII CCGG 4 cut(s) 46, 329, 530, 837
HphI GGTGA 3 cut(s) 129, 434, 619
Hpy166II GTNNAC 1 cut(s) 782
Hpy188I TCNGA 1 cut(s) 860
Hpy188III TCNNGA 2 cut(s) 46, 779
Hpy8I GTNNAC 1 cut(s) 782
HpyCH4III ACNGT 2 cut(s) 313, 413
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 6 cut(s) 33, 299, 545, 613, 634, 848
HpyF3I CTNAG 4 cut(s) 460, 603, 668, 842
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 2 cut(s) 395, 638
Kpn2I TCCGGA 1 cut(s) 45
Kzo9I GATC 2 cut(s) 775, 896
LmnI GCTCC 3 cut(s) 512, 802, 820
LweI GCATC 2 cut(s) 286, 857
MaeI CTAG 4 cut(s) 53, 363, 654, 741
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 6 cut(s) 166, 184, 307, 428, 557, 625
MalI GATC 2 cut(s) 777, 898
MboI GATC 2 cut(s) 775, 896
MboII GAAGA 4 cut(s) 331, 362, 610, 729
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 4 cut(s) 470, 640, 709, 872
MlyI GAGTC 2 cut(s) 215, 440
MmeI TCCRAC 2 cut(s) 252, 267
MnlI CCTC 3 cut(s) 268, 399, 583
MroI TCCGGA 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 865
MseI TTAA 1 cut(s) 249
MspI CCGG 4 cut(s) 46, 329, 530, 837
MspR9I CCNGG 3 cut(s) 531, 837, 838
Mva1269I GAATGC 1 cut(s) 817
NciI CCSGG 3 cut(s) 531, 837, 838
NdeII GATC 2 cut(s) 775, 896
NlaIII CATG 2 cut(s) 395, 638
NlaIV GGNNCC 1 cut(s) 514
NmuCI GTSAC 2 cut(s) 166, 625
NspV TTCGAA 2 cut(s) 564, 724
PaqCI CACCTGC 1 cut(s) 148
PctI GAATGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 865
PfeI GAWTC 4 cut(s) 94, 336, 395, 679
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 2 cut(s) 13, 517
PleI GAGTC 2 cut(s) 214, 440
PmaCI CACGTG 1 cut(s) 773
PmlI CACGTG 1 cut(s) 773
PpsI GAGTC 2 cut(s) 214, 440
Ppu21I YACGTR 1 cut(s) 773
PsiI TTATAA 1 cut(s) 878
PspCI CACGTG 1 cut(s) 773
PspFI CCCAGC 1 cut(s) 485
PspN4I GGNNCC 1 cut(s) 514
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 12, 516
Sau3AI GATC 2 cut(s) 775, 896
SchI GAGTC 2 cut(s) 215, 440
ScrFI CCNGG 3 cut(s) 531, 837, 838
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 2 cut(s) 286, 857
SfcI CTRYAG 1 cut(s) 908
SfuI TTCGAA 2 cut(s) 564, 724
SmaI CCCGGG 1 cut(s) 838
SmlI CTYRAG 2 cut(s) 507, 806
SmoI CTYRAG 2 cut(s) 507, 806
SpeI ACTAGT 2 cut(s) 52, 653
Sse9I AATT 4 cut(s) 470, 640, 709, 872
SsiI CCGC 3 cut(s) 74, 516, 760
SspMI CTAG 4 cut(s) 53, 363, 654, 741
StyD4I CCNGG 3 cut(s) 529, 835, 836
TaaI ACNGT 2 cut(s) 313, 413
TaiI ACGT 1 cut(s) 775
TaqI TCGA 2 cut(s) 564, 724
TasI AATT 4 cut(s) 470, 640, 709, 872
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 4 cut(s) 94, 336, 395, 679
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 168, 850
TseFI GTSAC 2 cut(s) 166, 625
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 166, 625
TspDTI ATGAA 2 cut(s) 722, 764
TspMI CCCGGG 1 cut(s) 836
TspRI CASTG 2 cut(s) 168, 850
XapI RAATTY 3 cut(s) 470, 709, 872
XmaI CCCGGG 1 cut(s) 836
XmnI GAANNNNTTC 1 cut(s) 865
XspI CTAG 4 cut(s) 53, 363, 654, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.