Rmu_sc0012364.1_g000001

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012364.1
OG0014831
Physical Location & Seq
Forward (+)
108 .. 3456
3349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012364.1_g000001.1.cds

Sequence Viewer

Length: 654 bp
atgggtgttgctgctctaacccagagactatgcaactttgaaatccggagactggtgttgataatcggtgtggcgattgctattgtagttgtgaatcagtgttttgagcttccctttggtaaaaatgtttacttttcacctgctgatactggttcagctttagtggtcacattgttgggtaatgttactagttcaaatgattcggagtctgggaagtttgatgttgttggtgtagtggggatagtggttaatgatactggtggtttagagttagaggagtttgagttagagaaagatgcaatgccagaattcaccgaatcaagttacagagtggagaccggaggttccaggcttctggtcatcgaaggtcatcttccggatccacaacctcagctcgctgaagcttctcgactacggctgcactacgctttggactcgttggctttcgaccgcgttcgaccactagtacaacagacctcgttcgcggtgttaaccggaacaaccgaacaagggatctcccgacctcaatccactgcacccgcgatccaagatccgaatgtttacctgcttgtggagaaccagatgtttcgagttaggctcgaactgcttgccgtcgactatcaggtgttttgtcggcaagcttgtgagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

217

Amino Acids

23.79

Weight (kDa)

4.62

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 2 cut(s) 148, 573
AccI GTMKAC 1 cut(s) 615
AccII CGCG 3 cut(s) 453, 485, 542
AccIII TCCGGA 2 cut(s) 45, 376
AciI CCGC 3 cut(s) 451, 485, 540
AclWI GGATC 5 cut(s) 374, 387, 521, 538, 545
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 1 cut(s) 468
AfiI CCNNNNNNNGG 3 cut(s) 52, 510, 571
AgsI TTSAA 2 cut(s) 41, 195
AhlI ACTAGT 2 cut(s) 188, 463
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 5 cut(s) 109, 158, 394, 404, 641
AluI AGCT 5 cut(s) 109, 158, 394, 404, 641
Alw26I GTCTC 3 cut(s) 19, 43, 329
AlwI GGATC 5 cut(s) 374, 387, 521, 538, 545
Aor13HI TCCGGA 2 cut(s) 45, 376
ApeKI GCWGC 2 cut(s) 11, 418
ApoI RAATTY 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 129, 304
BamHI GGATCC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 405
BceAI ACGGC 2 cut(s) 431, 596
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 1 cut(s) 349
BcoDI GTCTC 3 cut(s) 19, 43, 329
BcuI ACTAGT 2 cut(s) 188, 463
BfaI CTAG 2 cut(s) 189, 464
BfuAI ACCTGC 2 cut(s) 148, 573
BisI GCNGC 2 cut(s) 12, 419
BlsI GCNGC 2 cut(s) 13, 420
Bme1390I CCNGG 1 cut(s) 349
BmiI GGNNCC 2 cut(s) 346, 381
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 286
BplI GAGNNNNNCTC 2 cut(s) 582, 614
Bpu10I CCTNAGC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 329
BsaWI WCCGGW 4 cut(s) 45, 338, 376, 494
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 510, 571
Bse1I ACTGG 3 cut(s) 57, 154, 262
Bse3DI GCAATG 1 cut(s) 306
BseAI TCCGGA 2 cut(s) 45, 376
BseBI CCWGG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 52, 510, 571
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 3 cut(s) 57, 154, 262
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 405
BsgI GTGCAG 2 cut(s) 404, 519
Bsh1236I CGCG 3 cut(s) 453, 485, 542
Bsh1285I CGRYCG 1 cut(s) 451
BsiEI CGRYCG 1 cut(s) 451
BsiSI CCGG 4 cut(s) 46, 339, 377, 495
BslI CCNNNNNNNGG 3 cut(s) 52, 510, 571
BsmAI GTCTC 3 cut(s) 19, 43, 329
Bso31I GGTCTC 1 cut(s) 329
Bsp13I TCCGGA 2 cut(s) 45, 376
Bsp143I GATC 4 cut(s) 379, 513, 543, 550
BspACI CCGC 3 cut(s) 451, 485, 540
BspCNI CTCAG 1 cut(s) 403
BspEI TCCGGA 2 cut(s) 45, 376
BspFNI CGCG 3 cut(s) 453, 485, 542
BspLI GGNNCC 2 cut(s) 346, 381
BspMI ACCTGC 2 cut(s) 148, 573
BspPI GGATC 5 cut(s) 374, 387, 521, 538, 545
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 3 cut(s) 57, 154, 262
BssMI GATC 4 cut(s) 379, 513, 543, 550
Bst2UI CCWGG 1 cut(s) 349
BstC8I GCNNGC 3 cut(s) 396, 609, 639
BstDEI CTNAG 1 cut(s) 390
BstFNI CGCG 3 cut(s) 453, 485, 542
BstKTI GATC 4 cut(s) 382, 516, 546, 553
BstMAI GTCTC 3 cut(s) 19, 43, 329
BstMBI GATC 4 cut(s) 379, 513, 543, 550
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 1 cut(s) 604
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstUI CGCG 3 cut(s) 453, 485, 542
BstV1I GCAGC 1 cut(s) 405
BstX2I RGATCY 3 cut(s) 379, 513, 550
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 3 cut(s) 379, 513, 550
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 2 cut(s) 104, 531
BveI ACCTGC 2 cut(s) 148, 573
Cac8I GCNNGC 3 cut(s) 396, 609, 639
Csp6I GTAC 1 cut(s) 467
CviJI RGCY 9 cut(s) 109, 158, 352, 394, 404, 418, 443, 598, 641
CviKI_1 RGCY 9 cut(s) 109, 158, 352, 394, 404, 418, 443, 598, 641
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 1 cut(s) 390
DpnI GATC 4 cut(s) 381, 515, 545, 552
DpnII GATC 4 cut(s) 379, 513, 543, 550
Eco31I GGTCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 347
FaiI YATR 2 cut(s) 31, 652
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FauI CCCGC 1 cut(s) 547
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 12, 419
Fsp4HI GCNGC 2 cut(s) 12, 419
FspBI CTAG 2 cut(s) 189, 464
GluI GCNGC 2 cut(s) 12, 419
HapII CCGG 4 cut(s) 46, 339, 377, 495
HincII GTYRAC 2 cut(s) 492, 616
HindII GTYRAC 2 cut(s) 492, 616
HindIII AAGCTT 2 cut(s) 402, 639
HinfI GANTC 5 cut(s) 94, 200, 206, 317, 434
HpaI GTTAAC 1 cut(s) 492
HpaII CCGG 4 cut(s) 46, 339, 377, 495
HphI GGTGA 2 cut(s) 129, 304
Hpy166II GTNNAC 4 cut(s) 130, 492, 562, 616
Hpy188I TCNGA 2 cut(s) 205, 555
Hpy188III TCNNGA 4 cut(s) 46, 377, 408, 519
Hpy8I GTNNAC 4 cut(s) 130, 492, 562, 616
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 33, 299, 421, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 604
HpyF3I CTNAG 1 cut(s) 390
Kpn2I TCCGGA 2 cut(s) 45, 376
KspAI GTTAAC 1 cut(s) 492
Kzo9I GATC 4 cut(s) 379, 513, 543, 550
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 189, 464
MaeIII GTNAC 3 cut(s) 166, 184, 323
MalI GATC 4 cut(s) 381, 515, 545, 552
MboI GATC 4 cut(s) 379, 513, 543, 550
MboII GAAGA 1 cut(s) 365
MflI RGATCY 3 cut(s) 379, 513, 550
MluCI AATT 1 cut(s) 308
MlyI GAGTC 2 cut(s) 215, 428
MnlI CCTC 5 cut(s) 268, 335, 399, 487, 534
MroI TCCGGA 2 cut(s) 45, 376
MseI TTAA 2 cut(s) 249, 491
MspI CCGG 4 cut(s) 46, 339, 377, 495
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 3 cut(s) 453, 485, 542
MwoI GCNNNNNNNGC 1 cut(s) 604
NdeII GATC 4 cut(s) 379, 513, 543, 550
NlaIV GGNNCC 2 cut(s) 346, 381
NmuCI GTSAC 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 94, 200, 317
PkrI GCNGC 2 cut(s) 13, 420
PleI GAGTC 2 cut(s) 214, 428
PpsI GAGTC 2 cut(s) 214, 428
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 346, 381
PsuI RGATCY 3 cut(s) 379, 513, 550
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
SalI GTCGAC 1 cut(s) 614
SaqAI TTAA 2 cut(s) 249, 491
SatI GCNGC 2 cut(s) 12, 419
Sau3AI GATC 4 cut(s) 379, 513, 543, 550
SchI GAGTC 2 cut(s) 215, 428
ScrFI CCNGG 1 cut(s) 349
SfaNI GCATC 1 cut(s) 286
SpeI ACTAGT 2 cut(s) 188, 463
Sse9I AATT 1 cut(s) 308
SsiI CCGC 3 cut(s) 451, 485, 540
SspMI CTAG 2 cut(s) 189, 464
StyD4I CCNGG 1 cut(s) 347
TaqI TCGA 7 cut(s) 363, 409, 447, 457, 589, 600, 615
TasI AATT 1 cut(s) 308
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 3 cut(s) 94, 200, 317
Tru1I TTAA 2 cut(s) 249, 491
Tru9I TTAA 2 cut(s) 249, 491
TscAI CASTG 2 cut(s) 104, 538
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 11, 418
Tsp45I GTSAC 1 cut(s) 166
TspRI CASTG 2 cut(s) 104, 538
XapI RAATTY 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 2 cut(s) 189, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.