pycom02g08890

Serine threonine-protein kinase endoribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0007976
Physical Location & Seq
Forward (+)
6145543 .. 6146307
765 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08890.2

Sequence Viewer

Length: 531 bp
ATGGATCTCTTCTTGGTAGAGCATATTCCTGAAGCTGTAGATCTTATATCTCGTTTATTAAACCCCGACCCAGAGAGAAGGCCAAAGGCATCGGAAGTGCTGCTCCATCCTCTTTTTTGGAACTCCGAGACAAGACTCTCGTTTCTTCGCGACTCCAGTGACAGGGTAGAATTGGAAGATAGAGAGGCTAACTCTGGTGTTTTGAGAGCGCTAGAAAGTATTGCACCCATAGCTTTGGGTGGGAAGTGGGATGAAAAGATGGAACCTGCATTTCTCACAAACATCGGCCATTACAGGCGTTACAAATTTGACAGCGTTCGAGACCTATTGCGAGTCATTCGAAACAAATCGAATCACTACAGAGAGCTTCCAAACCAAATTCAGGAACTCGTCGGACCAGTTCCAGAAGGATTCGATTTCTACTTTGCGAGTCGGTTCCCGAGACTTCTGATTGAAGTATACAAAGTTGTGTGCCAAAACTGTAGAGAAGAAGAATGCTTTGGCAAGTATTTCAAAAGCAATGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005975 GO:0006020 GO:0006066 GO:0006139 GO:0006396 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016043 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019538 GO:0019751 GO:0019898 GO:0022607 GO:0023052 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031312 GO:0031505 GO:0031984 GO:0033036 GO:0033365 GO:0033554 GO:0034067 GO:0034613 GO:0034620 GO:0034641 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036290 GO:0042175 GO:0042221 GO:0042406 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045229 GO:0046483 GO:0046677 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051179 GO:0051259 GO:0051260 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0098542 GO:0098827 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1901615 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010
Pfam Domains
Protein Families
Pkinase Ribonuc_2-5A

Protein Analysis

177

Amino Acids

20.62

Weight (kDa)

5.67

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 459
AccII CGCG 1 cut(s) 150
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 2 cut(s) 305, 378
AcuI CTGAAG 1 cut(s) 51
AfeI AGCGCT 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 162, 382
AgsI TTSAA 2 cut(s) 455, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 3 cut(s) 35, 233, 367
AluI AGCT 3 cut(s) 35, 233, 367
Alw26I GTCTC 3 cut(s) 122, 315, 436
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 439
Aor51HI AGCGCT 1 cut(s) 210
AoxI GGCC 2 cut(s) 80, 286
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 2 cut(s) 305, 378
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 87
BccI CCATC 2 cut(s) 114, 253
BcoDI GTCTC 3 cut(s) 122, 315, 436
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 3 cut(s) 36, 358, 481
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 274
BglII AGATCT 1 cut(s) 40
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 264, 437
BmsI GCATC 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 315
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 382
Bse1I ACTGG 2 cut(s) 156, 398
Bse3DI GCAATG 1 cut(s) 526
BseGI GGATG 2 cut(s) 106, 256
BseLI CCNNNNNNNGG 2 cut(s) 162, 382
BseMI GCAATG 1 cut(s) 526
BseNI ACTGG 2 cut(s) 156, 398
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 82, 288
BsiHKCI CYCGRG 1 cut(s) 439
BslI CCNNNNNNNGG 2 cut(s) 162, 382
BsmAI GTCTC 3 cut(s) 122, 315, 436
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 82, 288
Bso31I GGTCTC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 439
Bsp119I TTCGAA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 4, 40
Bsp68I TCGCGA 1 cut(s) 150
BspANI GGCC 2 cut(s) 82, 288
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 264, 437
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 2 cut(s) 156, 398
BssMI GATC 2 cut(s) 4, 40
BssNAI GTATAC 1 cut(s) 460
Bst1107I GTATAC 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 340
BstF5I GGATG 2 cut(s) 106, 256
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 7, 43
BstMAI GTCTC 3 cut(s) 122, 315, 436
BstMBI GATC 2 cut(s) 4, 40
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSFI CTRYAG 3 cut(s) 36, 358, 481
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 4, 40
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 2 cut(s) 4, 40
BstZ17I GTATAC 1 cut(s) 460
BsuRI GGCC 2 cut(s) 82, 288
BtsCI GGATG 2 cut(s) 106, 256
BtsIMutI CAGTG 1 cut(s) 163
BtuMI TCGCGA 1 cut(s) 150
BveI ACCTGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 395
CviJI RGCY 6 cut(s) 35, 82, 188, 233, 288, 367
CviKI_1 RGCY 6 cut(s) 35, 82, 188, 233, 288, 367
DpnI GATC 2 cut(s) 6, 42
DpnII GATC 2 cut(s) 4, 40
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 395
Eco47III AGCGCT 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 439
FaiI YATR 4 cut(s) 24, 47, 230, 460
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 2 cut(s) 93, 263
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 2 cut(s) 82, 288
HhaI GCGC 1 cut(s) 211
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 6 cut(s) 135, 152, 333, 352, 411, 430
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 4 cut(s) 94, 127, 395, 450
Hpy188III TCNNGA 6 cut(s) 29, 149, 320, 383, 404, 439
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 72, 401
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 224, 269, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 2 cut(s) 4, 40
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 98
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 158, 299
MalI GATC 2 cut(s) 6, 42
MboI GATC 2 cut(s) 4, 40
MboII GAAGA 4 cut(s) 137, 188, 500, 503
MflI RGATCY 2 cut(s) 4, 40
MluCI AATT 3 cut(s) 170, 305, 378
MlyI GAGTC 4 cut(s) 129, 146, 342, 439
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 2 cut(s) 120, 178
MseI TTAA 2 cut(s) 59, 529
Mva1269I GAATGC 1 cut(s) 500
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 2 cut(s) 4, 40
NlaIV GGNNCC 2 cut(s) 264, 437
NmuCI GTSAC 1 cut(s) 158
NruI TCGCGA 1 cut(s) 150
NspV TTCGAA 1 cut(s) 340
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 352, 411
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 4 cut(s) 129, 146, 341, 438
PpsI GAGTC 4 cut(s) 129, 146, 341, 438
PspN4I GGNNCC 2 cut(s) 264, 437
PspPI GGNCC 1 cut(s) 395
PsuI RGATCY 2 cut(s) 4, 40
RruI TCGCGA 1 cut(s) 150
SaqAI TTAA 2 cut(s) 59, 529
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 4, 40
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 4 cut(s) 129, 146, 342, 439
SetI ASST 5 cut(s) 37, 235, 268, 327, 369
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 3 cut(s) 36, 358, 481
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 1 cut(s) 395
Sse9I AATT 3 cut(s) 170, 305, 378
SspMI CTAG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 4 cut(s) 319, 340, 350, 414
TasI AATT 3 cut(s) 170, 305, 378
TfiI GAWTC 2 cut(s) 352, 411
Tru1I TTAA 2 cut(s) 59, 529
Tru9I TTAA 2 cut(s) 59, 529
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 2 cut(s) 305, 378
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.