Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007976

Physical Location & Seq

Genomic Coordinates Reverse (-)

27068919 .. 27073336

Gene Structure 4418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGAGACGATCGGTGATCTTCCTTCTCCTGTTTGCTCCCTTGATCGGCTGTTTCGTCAAGTCTGGTTCAGCCGAGGAGACCTCCCTCGCCAATCCAGGTTCCGCCGGCGGCGCTCTTCAGCTCTTCAGCTCTCTTCTGCCTCCTGCACTTAGGAATGATGCAGCGCTTTTGGTCACATTGGATGGCAAGGTAGTTTCTGTCAACCCCAAGACGATGGAGATTGAGTGGGCCTTGTCCTCTGGTTCCCGAATTCACTCTTCCTATCAGAACGTCTCTTATTTCAACAACTGCAGCCGCAGGAGTGATGATGGTCACTCTTTCGTTGATATTGGTGAAGACTGGGCCCTCTATCGTCACAGCAACACCAACAAAAAGAAGAAGAAGAAACTGTCGTCGAGTATTAGAGAATATGTCGCAAGTACTCCGCTAGTTTCCGAGGATGGAGGAGTCACATTGGGGTCAAAGATCACTAAAGTATTTGCTGTTAATGCTGTGACCGGACAAGTAATTCATAGTTTTAGGTTGGGTGATAATACTCCTTCAGCTACTTTAGGTATGGAACCCACCGGTGCCGAGGGGTTGGAAACATCTGGACTGGTGCTTTATCTTGAGAGAACAGATTACACACTGCAGCATTGTACAGTCAAGGGCGATCTTCTGTGGAAATTAGAAATTGCAGAGTTTGATGCTCATTTTCGATATCCTAAAATTGGAAATGGGCTTGGTCTAGAGGACAGGCTTATTGCTAACTCAACAGTGCCTTATCAGAAGGAGAAGCCTGTTGTCATTCGGGTTCCTTATCCTAGGTCGGTGGAATCTCGTTCTGTAATTGACCGTCTAACTGATGGGTATTATGGAGGCAAACCTCTCCCCCTTGAAGGTCCTCATAACGATCTTCTGGCACTGCCTTTTGACAAAGGTGCTGTACCTCCTCACAACAATGAAGGCAGAGAAATGCTTGCTTTGCCCTCTCTTGAATTTGTGGACTCTAGGATCTTGGCTCTCCCTAGTAGAGATGTTGGTAAACTGGACATCACAAGCTCAGTGGCTGAATCTATTACTAACTTCCCCATACAATCTCTTTTTGTATTTCTTCTCACCCTATTATCCGTTCTGGGATATATCTTTCGCTTTCTGACTGGAAAACAGCGTAAACTGAAAGTGGTGGCTGAGGAAACTAAAGCGCAAGCAGGAGCTCCCAAAAAGAAGAAAACTCGAAGATTGGGAAATAATAAGAAGAATTTCAGTTATGAGAAAGACGCAAGAAATATGTCGTATGAAAATAAGTTTGGTGAATCTAATGGACCTGCACATGGGGAAAGAAATGAAACAAAATTGCTCTTGACCTCTTCTGATTTTATTGATCGTGAAACCAAGGGACGTAGGATTGGCAAGTTACTTGTTTCCAGTAATGAAATTGCTAAGGGGAGTAACGGTACCATTGTACTTGAGGGTATCTATGATGGTCGTCCAGTAGCTGTTAAACGCCTTGTGCGAACTCATCATGATGTGGCTTTGAAAGAGATTCAGAATCTTATTGCGTCTGATCAGCATCCAAATATTGTCCGTTGGTATGGCGTGGAGCATGATCAAGATTTTGTCTATCTATCCTTGGAGCGCTGCTCATGTAGCTTAAATGACTTGATTTATTATTACTCAGAGTCTTCTCAAGGCCAAATTATCAACAAGGATGAGGATCCTCACTTTTTGGCCGAGTATCGCATTCAATTGCAGACAATCATGGGAAAGAACAAGAATGTTGAATTGTGGAAGACAAATGGATACCCTTCACCCCAAATGTTAAAATTAATGAGTAAGCATTGTATAATGAGCAAGCTACTATGCATTCATTGCAAGATTTGTCCCGTATTCCCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006983 GO:0006984 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010506 GO:0010508 GO:0012505 GO:0014070 GO:0016020 GO:0016070 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0033554 GO:0034263 GO:0034641 GO:0034976 GO:0035966 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071216 GO:0071704 GO:0090304 GO:0098542 GO:0098827 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010

Pfam Domains

Protein Families

PQQ Pkinase Ribonuc_2-5A

Protein Analysis

626

Amino Acids

69.68

Weight (kDa)

8.97

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	471 - 551	7.7e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24360 AT5G24360 AT5G24360
fragaria_vesca	FvH4_5g25750 FvH4_5g25750
malus_domestica	MD06G1007000.v1.1
prunus_persica	Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1
pyrus_communis	pycom02g08890 pycom06g00610
rosa_chinensis	RchiOBHm_Chr7g0216101
rosa_laevigata	RLG00000002594
rosa_multiflora	Rmu_co8312507.1_g000001 Rmu_sc0009767.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243650
rosa_rugosa	Rorug07G0158900 Rorug07G0158900
rosa_samantha	Rh7AG295900 Rh7AG296000 Rh7BG288300 Rh7CG316300 Rh7DG298800
rosa_wichuraiana	Rw7G025170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1315
Acc65I	GGTACC	1 cut(s)	1436
AccB1I	GGYRCC	2 cut(s)	569, 1436
AciI	CCGC	4 cut(s)	102, 108, 295, 425
AclWI	GGATC	3 cut(s)	1001, 1691, 1704
AcoI	YGGCCR	1 cut(s)	1710
AcsI	RAATTY	3 cut(s)	249, 977, 1240
AcuI	CTGAAG	3 cut(s)	101, 109, 525
AfaI	GTAC	5 cut(s)	421, 640, 927, 1438, 1446
AfeI	AGCGCT	2 cut(s)	165, 1619
AfiI	CCNNNNNNNGG	4 cut(s)	44, 710, 878, 1313
AgeI	ACCGGT	1 cut(s)	566
AgsI	TTSAA	6 cut(s)	283, 878, 977, 1519, 1727, 1763
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	1272, 1304
AluBI	AGCT	8 cut(s)	121, 129, 545, 1041, 1196, 1478, 1632, 1837
AluI	AGCT	8 cut(s)	121, 129, 545, 1041, 1196, 1478, 1632, 1837
Alw21I	GWGCWC	1 cut(s)	1198
Alw26I	GTCTC	2 cut(s)	71, 277
AlwI	GGATC	3 cut(s)	1001, 1691, 1704
AlwNI	CAGNNNCTG	2 cut(s)	1049, 1478
Aor51HI	AGCGCT	2 cut(s)	165, 1619
AoxI	GGCC	4 cut(s)	228, 342, 1672, 1710
ApaI	GGGCCC	1 cut(s)	346
ApeKI	GCWGC	4 cut(s)	161, 291, 631, 1620
ApoI	RAATTY	3 cut(s)	249, 977, 1240
AseI	ATTAAT	1 cut(s)	1808
AsiGI	ACCGGT	1 cut(s)	566
Asp700I	GAANNNNTTC	1 cut(s)	1241
Asp718I	GGTACC	1 cut(s)	1436
AspA2I	CCTAGG	1 cut(s)	803
AspLEI	GCGC	4 cut(s)	113, 166, 1186, 1620
AspS9I	GGNCC	5 cut(s)	228, 342, 343, 881, 1304
AsuHPI	GGTGA	6 cut(s)	25, 344, 539, 1090, 1304, 1782
AvaII	GGWCC	2 cut(s)	881, 1304
AvrII	CCTAGG	1 cut(s)	803
BaeGI	GKGCMC	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	1428, 1461
BamHI	GGATCC	1 cut(s)	1696
BanI	GGYRCC	2 cut(s)	569, 1436
BanII	GRGCYC	2 cut(s)	346, 1198
BbsI	GAAGAC	3 cut(s)	342, 1656, 1778
Bbv12I	GWGCWC	1 cut(s)	1198
BbvCI	CCTCAGC	1 cut(s)	1170
BbvI	GCAGC	4 cut(s)	173, 303, 643, 1607
BccI	CCATC	6 cut(s)	176, 208, 302, 434, 839, 1457
BciT130I	CCWGG	1 cut(s)	96
BciVI	GTATCC	1 cut(s)	1775
BclI	TGATCA	2 cut(s)	1546, 1588
BcoDI	GTCTC	2 cut(s)	71, 277
BfaI	CTAG	5 cut(s)	428, 728, 804, 990, 1008
BfmI	CTRYAG	2 cut(s)	289, 629
BfoI	RGCGCY	3 cut(s)	114, 167, 1621
BfuAI	ACCTGC	1 cut(s)	1315
BfuI	GTATCC	1 cut(s)	1775
BisI	GCNGC	6 cut(s)	109, 162, 292, 295, 632, 1621
BlnI	CCTAGG	1 cut(s)	803
BlsI	GCNGC	6 cut(s)	110, 163, 293, 296, 633, 1622
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	2 cut(s)	881, 1304
BmgT120I	GGNCC	5 cut(s)	228, 342, 343, 881, 1304
BmiI	GGNNCC	8 cut(s)	100, 244, 344, 561, 571, 795, 1438, 1698
BmrFI	CCNGG	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	3 cut(s)	148, 676, 1561
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	3 cut(s)	342, 1656, 1778
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 1607, 1639
Bpu10I	CCTNAGC	2 cut(s)	1170, 1422
BpuEI	CTTGAG	3 cut(s)	629, 1469, 1653
BsaBI	GATNNNNATC	2 cut(s)	1551, 1695
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	6 cut(s)	72, 435, 573, 803, 1374, 1611
BsaWI	WCCGGW	2 cut(s)	497, 566
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 1420, 1450
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 710, 878, 1313
Bse118I	RCCGGY	2 cut(s)	104, 566
Bse1I	ACTGG	6 cut(s)	344, 600, 1032, 1144, 1407, 1472
Bse3DI	GCAATG	1 cut(s)	1849
Bse8I	GATNNNNATC	2 cut(s)	1551, 1695
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	6 cut(s)	72, 435, 573, 803, 1374, 1611
BseGI	GGATG	4 cut(s)	187, 445, 1552, 1696
BseJI	GATNNNNATC	2 cut(s)	1551, 1695
BseLI	CCNNNNNNNGG	4 cut(s)	44, 710, 878, 1313
BseMI	GCAATG	1 cut(s)	1849
BseMII	CTCAG	3 cut(s)	1056, 1161, 1671
BseNI	ACTGG	6 cut(s)	344, 600, 1032, 1144, 1407, 1472
BseRI	GAGGAG	3 cut(s)	89, 459, 921
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	4 cut(s)	173, 303, 643, 1607
BsgI	GTGCAG	2 cut(s)	129, 1293
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	4 cut(s)	230, 344, 1674, 1712
BshNI	GGYRCC	2 cut(s)	569, 1436
BshTI	ACCGGT	1 cut(s)	566
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	1198
BsiSI	CCGG	3 cut(s)	105, 498, 567
BslFI	GGGAC	2 cut(s)	1392, 1848
BslI	CCNNNNNNNGG	4 cut(s)	44, 710, 878, 1313
BsmAI	GTCTC	2 cut(s)	71, 277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	1392, 1848
BsmI	GAATGC	2 cut(s)	1722, 1845
BsnI	GGCC	4 cut(s)	230, 344, 1674, 1712
Bso31I	GGTCTC	1 cut(s)	71
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	346, 1198
Bsp1407I	TGTACA	1 cut(s)	638
BspACI	CCGC	4 cut(s)	102, 108, 295, 425
BspANI	GGCC	4 cut(s)	230, 344, 1674, 1712
BspCNI	CTCAG	3 cut(s)	1055, 1162, 1670
BspHI	TCATGA	1 cut(s)	1504
BspLI	GGNNCC	8 cut(s)	100, 244, 344, 561, 571, 795, 1438, 1698
BspMAI	CTGCAG	2 cut(s)	293, 633
BspMI	ACCTGC	1 cut(s)	1315
BspPI	GGATC	3 cut(s)	1001, 1691, 1704
BspQI	GCTCTTC	2 cut(s)	120, 128
BspT107I	GGYRCC	2 cut(s)	569, 1436
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	1849
BsrFI	RCCGGY	2 cut(s)	104, 566
BsrGI	TGTACA	1 cut(s)	638
BsrI	ACTGG	6 cut(s)	344, 600, 1032, 1144, 1407, 1472
BssAI	RCCGGY	2 cut(s)	104, 566
BssECI	CCNNGG	6 cut(s)	72, 435, 573, 803, 1374, 1611
BssT1I	CCWWGG	3 cut(s)	803, 1374, 1611
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	6 cut(s)	390, 643, 757, 836, 1436, 1878
Bst6I	CTCTTC	5 cut(s)	120, 128, 138, 262, 1354
BstAPI	GCANNNNNTGC	1 cut(s)	1851
BstAUI	TGTACA	1 cut(s)	638
BstC8I	GCNNGC	4 cut(s)	106, 960, 1188, 1835
BstDEI	CTNAG	5 cut(s)	149, 1042, 1170, 1422, 1657
BstF5I	GGATG	4 cut(s)	187, 445, 1552, 1696
BstH2I	RGCGCY	3 cut(s)	114, 167, 1621
BstHHI	GCGC	4 cut(s)	113, 166, 1186, 1620
BstMAI	GTCTC	2 cut(s)	71, 277
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 488, 964, 1629, 1851
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	2 cut(s)	289, 629
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	4 cut(s)	173, 303, 643, 1607
BstV2I	GAAGAC	3 cut(s)	342, 1656, 1778
BstX2I	RGATCY	2 cut(s)	993, 1696
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	2 cut(s)	993, 1696
BsuI	GTATCC	1 cut(s)	1775
BsuRI	GGCC	4 cut(s)	230, 344, 1674, 1712
BtsCI	GGATG	4 cut(s)	187, 445, 1552, 1696
BtsI	GCAGTG	2 cut(s)	626, 902
BtsIMutI	CAGTG	5 cut(s)	626, 762, 902, 1050, 1874
BveI	ACCTGC	1 cut(s)	1315
Cac8I	GCNNGC	4 cut(s)	106, 960, 1188, 1835
CaiI	CAGNNNCTG	2 cut(s)	1049, 1478
CciI	TCATGA	1 cut(s)	1504
CfoI	GCGC	4 cut(s)	113, 166, 1186, 1620
Cfr10I	RCCGGY	2 cut(s)	104, 566
Cfr13I	GGNCC	5 cut(s)	228, 342, 343, 881, 1304
CseI	GACGC	2 cut(s)	1268, 1530
Csp6I	GTAC	5 cut(s)	420, 639, 926, 1437, 1445
CspAI	ACCGGT	1 cut(s)	566
CspCI	CAANNNNNGTGG	2 cut(s)	1026, 1061
CviAII	CATG	5 cut(s)	1313, 1505, 1586, 1626, 1741
CviQI	GTAC	5 cut(s)	420, 639, 926, 1437, 1445
DdeI	CTNAG	5 cut(s)	149, 1042, 1170, 1422, 1657
EaeI	YGGCCR	1 cut(s)	1710
Eam1104I	CTCTTC	5 cut(s)	120, 128, 138, 262, 1354
EarI	CTCTTC	5 cut(s)	120, 128, 138, 262, 1354
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	1196
Eco130I	CCWWGG	3 cut(s)	803, 1374, 1611
Eco24I	GRGCYC	2 cut(s)	346, 1198
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	701
Eco47I	GGWCC	2 cut(s)	881, 1304
Eco47III	AGCGCT	2 cut(s)	165, 1619
Eco53kI	GAGCTC	1 cut(s)	1196
Eco57I	CTGAAG	3 cut(s)	101, 109, 525
EcoICRI	GAGCTC	1 cut(s)	1196
EcoO109I	RGGNCCY	2 cut(s)	343, 881
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	701
EcoT14I	CCWWGG	3 cut(s)	803, 1374, 1611
EcoT22I	ATGCAT	1 cut(s)	1847
EcoT38I	GRGCYC	2 cut(s)	346, 1198
ErhI	CCWWGG	3 cut(s)	803, 1374, 1611
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	5 cut(s)	1316, 1508, 1589, 1629, 1744
FaqI	GGGAC	2 cut(s)	1392, 1848
FatI	CATG	5 cut(s)	1312, 1504, 1585, 1625, 1740
FbaI	TGATCA	2 cut(s)	1546, 1588
Fnu4HI	GCNGC	6 cut(s)	109, 162, 292, 295, 632, 1621
FokI	GGATG	4 cut(s)	194, 452, 1539, 1703
FriOI	GRGCYC	2 cut(s)	346, 1198
Fsp4HI	GCNGC	6 cut(s)	109, 162, 292, 295, 632, 1621
FspBI	CTAG	5 cut(s)	428, 728, 804, 990, 1008
GlaI	GCGC	4 cut(s)	112, 165, 1185, 1619
GluI	GCNGC	6 cut(s)	109, 162, 292, 295, 632, 1621
HaeII	RGCGCY	3 cut(s)	114, 167, 1621
HaeIII	GGCC	4 cut(s)	230, 344, 1674, 1712
HapII	CCGG	3 cut(s)	105, 498, 567
HgaI	GACGC	2 cut(s)	1268, 1530
HhaI	GCGC	4 cut(s)	113, 166, 1186, 1620
Hin1II	CATG	5 cut(s)	1316, 1508, 1589, 1629, 1744
Hin6I	GCGC	4 cut(s)	111, 164, 1184, 1618
HinP1I	GCGC	4 cut(s)	111, 164, 1184, 1618
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	8 cut(s)	447, 815, 986, 1052, 1295, 1525, 1531, 1661
HpaII	CCGG	3 cut(s)	105, 498, 567
HphI	GGTGA	6 cut(s)	25, 344, 539, 1090, 1304, 1782
Hpy166II	GTNNAC	4 cut(s)	202, 985, 1025, 1154
Hpy188I	TCNGA	8 cut(s)	267, 436, 768, 1137, 1354, 1530, 1546, 1660
Hpy188III	TCNNGA	9 cut(s)	246, 591, 608, 728, 974, 1342, 1367, 1505, 1592
Hpy8I	GTNNAC	4 cut(s)	202, 985, 1025, 1154
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	6 cut(s)	32, 549, 763, 872, 938, 1797
HpyCH4III	ACNGT	6 cut(s)	390, 643, 757, 836, 1436, 1878
HpyCH4IV	ACGT	2 cut(s)	270, 1381
HpyCH4V	TGCA	9 cut(s)	146, 161, 291, 631, 677, 1310, 1732, 1845, 1854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 488, 964, 1629, 1851
HpyF3I	CTNAG	5 cut(s)	149, 1042, 1170, 1422, 1657
HpySE526I	ACGT	2 cut(s)	270, 1381
Hsp92II	CATG	5 cut(s)	1316, 1508, 1589, 1629, 1744
HspAI	GCGC	4 cut(s)	111, 164, 1184, 1618
KpnI	GGTACC	1 cut(s)	1440
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	1546, 1588
LguI	GCTCTTC	2 cut(s)	120, 128
LmnI	GCTCC	5 cut(s)	40, 1193, 1201, 1582, 1615
Lsp1109I	GCAGC	4 cut(s)	173, 303, 643, 1607
LweI	GCATC	3 cut(s)	148, 676, 1561
MaeI	CTAG	5 cut(s)	428, 728, 804, 990, 1008
MaeII	ACGT	2 cut(s)	270, 1381
MaeIII	GTNAC	7 cut(s)	172, 311, 353, 448, 493, 1395, 1430
MfeI	CAATTG	1 cut(s)	1727
MflI	RGATCY	2 cut(s)	993, 1696
MhlI	GDGCHC	2 cut(s)	346, 1198
MlyI	GAGTC	3 cut(s)	456, 980, 1670
MmeI	TCCRAC	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	1847
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	1241
MseI	TTAA	5 cut(s)	486, 1482, 1634, 1802, 1808
MslI	CAYNNNNRTG	2 cut(s)	939, 1506
MspI	CCGG	3 cut(s)	105, 498, 567
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	1727
Mva1269I	GAATGC	2 cut(s)	1722, 1845
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	5 cut(s)	110, 488, 964, 1629, 1851
NaeI	GCCGGC	1 cut(s)	106
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	5 cut(s)	1316, 1508, 1589, 1629, 1744
NlaIV	GGNNCC	8 cut(s)	100, 244, 344, 561, 571, 795, 1438, 1698
NmeAIII	GCCGAG	3 cut(s)	97, 598, 1738
NmuCI	GTSAC	5 cut(s)	172, 311, 353, 448, 493
NsiI	ATGCAT	1 cut(s)	1847
PagI	TCATGA	1 cut(s)	1504
PciSI	GCTCTTC	2 cut(s)	120, 128
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 1492
PctI	GAATGC	2 cut(s)	1722, 1845
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	1241
PfeI	GAWTC	5 cut(s)	815, 1052, 1295, 1525, 1531
PinAI	ACCGGT	1 cut(s)	566
PkrI	GCNGC	6 cut(s)	110, 163, 293, 296, 633, 1622
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	3 cut(s)	455, 980, 1669
PpsI	GAGTC	3 cut(s)	455, 980, 1669
PpuMI	RGGWCCY	1 cut(s)	881
PshBI	ATTAAT	1 cut(s)	1808
Psp124BI	GAGCTC	1 cut(s)	1198
Psp5II	RGGWCCY	1 cut(s)	881
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	8 cut(s)	100, 244, 344, 561, 571, 795, 1438, 1698
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	5 cut(s)	228, 342, 343, 881, 1304
PspPPI	RGGWCCY	1 cut(s)	881
PstI	CTGCAG	2 cut(s)	293, 633
PstNI	CAGNNNCTG	2 cut(s)	1049, 1478
PsuI	RGATCY	2 cut(s)	993, 1696
PvuI	CGATCG	1 cut(s)	11
RsaI	GTAC	5 cut(s)	421, 640, 927, 1438, 1446
RsaNI	GTAC	5 cut(s)	420, 639, 926, 1437, 1445
RseI	CAYNNNNRTG	2 cut(s)	939, 1506
SacI	GAGCTC	1 cut(s)	1198
SapI	GCTCTTC	2 cut(s)	120, 128
SaqAI	TTAA	5 cut(s)	486, 1482, 1634, 1802, 1808
SatI	GCNGC	6 cut(s)	109, 162, 292, 295, 632, 1621
Sau96I	GGNCC	5 cut(s)	228, 342, 343, 881, 1304
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	3 cut(s)	456, 980, 1670
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	346, 1198
SfaNI	GCATC	3 cut(s)	148, 676, 1561
SfcI	CTRYAG	2 cut(s)	289, 629
SgrAI	CRCCGGYG	2 cut(s)	104, 566
SinI	GGWCC	2 cut(s)	881, 1304
SmiMI	CAYNNNNRTG	2 cut(s)	939, 1506
SmlI	CTYRAG	3 cut(s)	608, 1448, 1668
SmoI	CTYRAG	3 cut(s)	608, 1448, 1668
SsiI	CCGC	4 cut(s)	102, 108, 295, 425
SspI	AATATT	1 cut(s)	1561
SspMI	CTAG	5 cut(s)	428, 728, 804, 990, 1008
SstI	GAGCTC	1 cut(s)	1198
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	3 cut(s)	803, 1374, 1611
TaaI	ACNGT	6 cut(s)	390, 643, 757, 836, 1436, 1878
TaiI	ACGT	2 cut(s)	273, 1384
TaqI	TCGA	3 cut(s)	395, 697, 1216
TatI	WGTACW	3 cut(s)	419, 638, 1444
TauI	GCSGC	2 cut(s)	111, 297
TfiI	GAWTC	5 cut(s)	815, 1052, 1295, 1525, 1531
Tru1I	TTAA	5 cut(s)	486, 1482, 1634, 1802, 1808
Tru9I	TTAA	5 cut(s)	486, 1482, 1634, 1802, 1808
TscAI	CASTG	5 cut(s)	633, 762, 909, 1050, 1881
TseFI	GTSAC	5 cut(s)	172, 311, 353, 448, 493
TseI	GCWGC	4 cut(s)	161, 291, 631, 1620
Tsp45I	GTSAC	5 cut(s)	172, 311, 353, 448, 493
TspDTI	ATGAA	6 cut(s)	500, 957, 1293, 1341, 1428, 1838
TspGWI	ACGGA	2 cut(s)	1099, 1556
TspRI	CASTG	5 cut(s)	633, 762, 909, 1050, 1881
VpaK11BI	GGWCC	2 cut(s)	881, 1304
VspI	ATTAAT	1 cut(s)	1808
XapI	RAATTY	3 cut(s)	249, 977, 1240
XbaI	TCTAGA	1 cut(s)	727
XmaJI	CCTAGG	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	1241
XspI	CTAG	5 cut(s)	428, 728, 804, 990, 1008
ZrmI	AGTACT	1 cut(s)	421
Zsp2I	ATGCAT	1 cut(s)	1847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.