Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8312507.1

Orthogroup ID

OG0007976

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 642

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8312507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 403 bp

atggatctttttactcgtctcttggatcccaaccctgacatgaggccaacagctgtggatgtgttgcatcatccctttttctggagttctgagacgagactttcgtttctgcgtgatgctagtgatcgggttgaattggaggatagggagactgcatcccagctcttaagttcattagaaagtactgcagcagttgctctaaatggtaagtgggatgaaaagatggaacctgcattcctcaataacattggtcgctacaggcgttacaagtttgacagcatccgtgacttgctgcgtgtaataaggaacaagttaaatcactacagagaacttccccaagagatccaggaattattggggacagttcctgagggcttcgacagttatttttcaagtcgattcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006983 GO:0006984 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010506 GO:0010508 GO:0012505 GO:0014070 GO:0016020 GO:0016070 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0033554 GO:0034263 GO:0034641 GO:0034976 GO:0035966 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071216 GO:0071704 GO:0090304 GO:0098542 GO:0098827 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010

Pfam Domains

Protein Families

PQQ Pkinase Ribonuc_2-5A

Protein Analysis

134

Amino Acids

15.77

Weight (kDa)

5.39

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24360 AT5G24360 AT5G24360
fragaria_vesca	FvH4_5g25750 FvH4_5g25750
malus_domestica	MD06G1007000.v1.1
prunus_persica	Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1
pyrus_communis	pycom02g08890 pycom06g00610
rosa_chinensis	RchiOBHm_Chr7g0216101
rosa_laevigata	RLG00000002594
rosa_multiflora	Rmu_co8312507.1_g000001 Rmu_sc0009767.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243650
rosa_rugosa	Rorug07G0158900 Rorug07G0158900
rosa_samantha	Rh7AG295900 Rh7AG296000 Rh7BG288300 Rh7CG316300 Rh7DG298800
rosa_wichuraiana	Rw7G025170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AclWI	GGATC	4 cut(s)	12, 20, 33, 337
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	134, 393
AjnI	CCWGG	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	2 cut(s)	53, 163
AluI	AGCT	2 cut(s)	53, 163
Alw26I	GTCTC	4 cut(s)	23, 86, 91, 143
AlwI	GGATC	4 cut(s)	12, 20, 33, 337
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	188, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AxyI	CCTNAGG	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	200, 279
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	4 cut(s)	23, 86, 91, 143
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	3 cut(s)	186, 256, 322
BfrI	CTTAAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	2 cut(s)	189, 293
BlsI	GCNGC	2 cut(s)	190, 294
BmcAI	AGTACT	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	27, 228
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	4 cut(s)	76, 106, 164, 288
BpmI	CTGGAG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	5 cut(s)	64, 70, 155, 220, 279
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	81, 360
BseXI	GCAGC	2 cut(s)	200, 279
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	4 cut(s)	23, 86, 91, 143
BsmBI	CGTCTC	2 cut(s)	23, 86
BsmFI	GGGAC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	4, 25, 124, 342
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	82, 361
BspLI	GGNNCC	2 cut(s)	27, 228
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	4 cut(s)	12, 20, 33, 337
BspTI	CTTAAG	1 cut(s)	166
BssMI	GATC	4 cut(s)	4, 25, 124, 342
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	364, 383
BstAFI	CTTAAG	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	90, 369
BstF5I	GGATG	5 cut(s)	64, 70, 155, 220, 279
BstKTI	GATC	4 cut(s)	7, 28, 127, 345
BstMAI	GTCTC	4 cut(s)	23, 86, 91, 143
BstMBI	GATC	4 cut(s)	4, 25, 124, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	3 cut(s)	186, 256, 322
BstV1I	GCAGC	2 cut(s)	200, 279
BstX2I	RGATCY	3 cut(s)	4, 25, 342
BstYI	RGATCY	3 cut(s)	4, 25, 342
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	5 cut(s)	64, 70, 155, 220, 279
BveI	ACCTGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	183
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	4 cut(s)	46, 53, 163, 375
CviKI_1	RGCY	4 cut(s)	46, 53, 163, 375
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	90, 369
DpnI	GATC	4 cut(s)	6, 27, 126, 344
DpnII	GATC	4 cut(s)	4, 25, 124, 342
Eco81I	CCTNAGG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	345
Esp3I	CGTCTC	2 cut(s)	23, 86
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	189, 293
FokI	GGATG	5 cut(s)	57, 71, 142, 227, 266
Fsp4HI	GCNGC	2 cut(s)	189, 293
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	189, 293
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	1 cut(s)	399
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	82, 368
HpyCH4III	ACNGT	2 cut(s)	364, 383
HpyCH4V	TGCA	4 cut(s)	67, 155, 188, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	90, 369
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	4, 25, 124, 342
LpnPI	CCDG	8 cut(s)	48, 67, 173, 243, 244, 332, 359, 381
Lsp1109I	GCAGC	2 cut(s)	200, 279
LweI	GCATC	4 cut(s)	76, 106, 164, 288
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	263, 284
MalI	GATC	4 cut(s)	6, 27, 126, 344
MboI	GATC	4 cut(s)	4, 25, 124, 342
MflI	RGATCY	3 cut(s)	4, 25, 342
MluCI	AATT	2 cut(s)	134, 350
MnlI	CCTC	4 cut(s)	36, 133, 248, 364
MseI	TTAA	2 cut(s)	167, 314
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	4 cut(s)	4, 25, 124, 342
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	27, 228
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	2 cut(s)	101, 259
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	190, 294
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	27, 228
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	3 cut(s)	4, 25, 342
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	167, 314
SatI	GCNGC	2 cut(s)	189, 293
Sau3AI	GATC	4 cut(s)	4, 25, 124, 342
ScaI	AGTACT	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	3 cut(s)	55, 165, 232
SfaNI	GCATC	4 cut(s)	76, 106, 164, 288
SfcI	CTRYAG	3 cut(s)	186, 256, 322
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	134, 350
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	364, 383
TaqI	TCGA	2 cut(s)	378, 397
TasI	AATT	2 cut(s)	134, 350
TatI	WGTACW	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	167, 314
Tru9I	TTAA	2 cut(s)	167, 314
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	188, 292
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	162, 231
TspGWI	ACGGA	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	166
XspI	CTAG	1 cut(s)	120
ZrmI	AGTACT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.