Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009767.1

Orthogroup ID

OG0007976

Physical Location & Seq

Genomic Coordinates Forward (+)

7554 .. 11605

Gene Structure 4052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009767.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

atgagacgatcggtgatcttccttctcctgtttgctcccttgatcggctgtttcgtcaagtctggttcagccgaggagacctccctcgccaacccagattccgccggcggcgctcttcagctcttcagctctcttctgcctcctgcacttaggaatgatgcagcgcttttggtcacattggatggcaaggtagtttctgtcaaccccaagacgatggagattgagtgggccttgtcctctggttcccgaattcactcttcctatcagaacgtctcttatttcaacaactgcaggagtgatgacgatcactctttcattgatattggtgaagactgggccctctatcgtcacagcaacaccaacaagaagaagaagaaactgtcgtcgagtattagagaatatgtcgcaactactccgctagtttccgaggatggaggagtcacattggggtcaaagatcactaaagtgtttgctgttaatgctgtgaccggagaagtaattcatagttttaggttgggtgataatactccttcagctactttaggtatggaacccaccggtgccgaggggttggaaacatctggactggtgttgtatctcgagagaacagattacacactgcagcattgcacagtcaagggcgatcttctgtggaaattagaaattgcagagtttgatgctcactttcgatatcctaaaattggaaatgggcttggtccaggggacaggcttattgctaactcaacagtgccttatctgaaggagaagcctgttgtcattcgcgttccttatcctaattcggtggaatctcgttctgtaattgacggtctaactgatgggtattttggaggcaaacctctcccccttgaaggtcctcataacgatcttctggcactgccttttgacaaaggtgctgtacctcctcacaacaacgaaggcagagaaatgcttgctttgccctctcttgaatttctggactctaggatcttggctctccctagtagagatgttggtaaactggacatcacaagctcagtggctgaatctattactaacttccccatacaatctctttttgtatttcttctcaccctattatccattctgggatatatctttcgttttctgactggaaaacagcgtaaactgaaagtggtggctgaggaaactaaagcgcaagcaggagctcccaaaaagaagaaaactcgaagattgggaaataataagaagaatttcagttatgagaaagatgcaagaaatatgtcgtatgaatataagtttggtgaatctaatggacctgcacatggggaaagaaatgaaaaaaaattgctcttgacctcttctgattttattgatcgtgacaccgagggacgtaggattggcaagttacttgtttccagtaatgaaattgctaaggggagtaacggtaccattgtacttgagggtatctatgatggtcgtccagtagctgttaaacgccttgtgcgaactcatcatgatgtggctttgaaagagattcagaatcttattgcgtctgatcagcatccaaatattgtccgttggtatggcgtggagcatgatcaagattttgtctatctatccttggagcgctgctcatgtagcttaaatgacttgatttattattactcagagtcttctcaaggccaaattatcaacaaggatgaggatcctcactttttggccgagtatcgcattcaattgcaggcaatcatgggaaagaacaagaatgttgaattgtggaagacaaatggatacccttcaccccaaatgttaaaattaatgagtgatcttgtttctggacttgcccatttgcatgaacttggaattatacatcgggatctaaagcctcagaatgttttgataatcaaaggcagatcgttatgtgccaagctttcagatatgggtatcagcaaacgccttcaaggggacaggtcttccataacccagcatgctactggttatgggagttcaggttggcaagcacctgaacaacttctccatcagcggcaaacacgtgcagtagatttatttagtttaggttgtctcctctttttctgtctcactgggggtaaacacccttatggggatagtatcgagcgtgatgtgaatatagtgaatgatcggaaagacctattcttggtagagaatataccagaagcaatggatctttttactcgtctcttggatcccaaccctgacatgaggccaacagctgtggatgtgttgcatcatccctttttctggagttctgagacgagactttcgtttctgcgtgatgctagtgatcgggttgaattggaggatagggagactgcatcccagctcttaagttcattagaaagtactgcagcagttgctctaaatggtaagtgggatgaaaagatggaacctgcattcctcaataacattggtcgctacaggcgttacaagtttgacagcatccgtgacttgctgcgtgtaataaggaacaagttaaatcactacagagaacttccccaagagatccaggaattattggggacagttcctgagggcttcgacagttatttttcaagtcgattccccaaattattaattgaggtttataatgtgttgtacaagtactgcaaaggggaggaattttttcgcaagtatatactaggcaaatcggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006983 GO:0006984 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010506 GO:0010508 GO:0012505 GO:0014070 GO:0016020 GO:0016070 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0033554 GO:0034263 GO:0034641 GO:0034976 GO:0035966 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071216 GO:0071704 GO:0090304 GO:0098542 GO:0098827 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010

Pfam Domains

Protein Families

PQQ Pkinase Ribonuc_2-5A

Protein Analysis

891

Amino Acids

100.07

Weight (kDa)

7.34

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24360 AT5G24360 AT5G24360
fragaria_vesca	FvH4_5g25750 FvH4_5g25750
malus_domestica	MD06G1007000.v1.1
prunus_persica	Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1
pyrus_communis	pycom02g08890 pycom06g00610
rosa_chinensis	RchiOBHm_Chr7g0216101
rosa_laevigata	RLG00000002594
rosa_multiflora	Rmu_co8312507.1_g000001 Rmu_sc0009767.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243650
rosa_rugosa	Rorug07G0158900 Rorug07G0158900
rosa_samantha	Rh7AG295900 Rh7AG296000 Rh7BG288300 Rh7CG316300 Rh7DG298800
rosa_wichuraiana	Rw7G025170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2607
Acc36I	ACCTGC	2 cut(s)	1306, 2419
Acc65I	GGTACC	1 cut(s)	1427
AccB1I	GGYRCC	2 cut(s)	560, 1427
AccII	CGCG	1 cut(s)	783
AciI	CCGC	4 cut(s)	102, 108, 416, 2026
AclWI	GGATC	8 cut(s)	992, 1682, 1695, 1866, 2193, 2201, 2214, 2518
AcoI	YGGCCR	1 cut(s)	1701
AcsI	RAATTY	4 cut(s)	249, 968, 1231, 2639
AcuI	CTGAAG	4 cut(s)	101, 109, 516, 779
AcvI	CACGTG	1 cut(s)	2036
AfaI	GTAC	6 cut(s)	918, 1429, 1437, 2365, 2618, 2624
AfeI	AGCGCT	2 cut(s)	165, 1610
AfiI	CCNNNNNNNGG	8 cut(s)	44, 701, 869, 1304, 1945, 2104, 2158, 2262
AflII	CTTAAG	1 cut(s)	2347
AflIII	ACRYGT	1 cut(s)	2033
AgeI	ACCGGT	1 cut(s)	557
AgsI	TTSAA	9 cut(s)	283, 869, 968, 1510, 1718, 1754, 1943, 2315, 2574
AjnI	CCWGG	2 cut(s)	718, 2526
AjuI	GAANNNNNNNTTGG	2 cut(s)	1263, 1295
AleI	CACNNNNGTG	1 cut(s)	464
AloI	GAACNNNNNNTCC	4 cut(s)	2001, 2033, 2400, 2432
Alw21I	GWGCWC	1 cut(s)	1189
Alw26I	GTCTC	8 cut(s)	71, 277, 2069, 2084, 2204, 2267, 2272, 2324
AlwI	GGATC	8 cut(s)	992, 1682, 1695, 1866, 2193, 2201, 2214, 2518
AlwNI	CAGNNNCTG	3 cut(s)	1040, 1469, 2549
Ama87I	CYCGRG	1 cut(s)	599
Aor51HI	AGCGCT	2 cut(s)	165, 1610
AoxI	GGCC	5 cut(s)	228, 336, 1663, 1701, 2225
ApaI	GGGCCC	1 cut(s)	340
ApeKI	GCWGC	5 cut(s)	161, 622, 1611, 2369, 2473
ApoI	RAATTY	4 cut(s)	249, 968, 1231, 2639
ArsI	GACNNNNNNTTYG	2 cut(s)	2266, 2298
AseI	ATTAAT	2 cut(s)	1799, 2594
AsiGI	ACCGGT	1 cut(s)	557
Asp700I	GAANNNNTTC	4 cut(s)	498, 1232, 2013, 2643
Asp718I	GGTACC	1 cut(s)	1427
AspLEI	GCGC	4 cut(s)	113, 166, 1177, 1611
AspS9I	GGNCC	6 cut(s)	228, 336, 337, 716, 872, 1295
AsuHPI	GGTGA	6 cut(s)	25, 338, 530, 1081, 1295, 1773
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	3 cut(s)	716, 872, 1295
AxyI	CCTNAGG	1 cut(s)	2550
BaeGI	GKGCMC	1 cut(s)	340
BaeI	ACNNNNGTAYC	2 cut(s)	1419, 1452
BamHI	GGATCC	2 cut(s)	1687, 2206
BanI	GGYRCC	2 cut(s)	560, 1427
BanII	GRGCYC	2 cut(s)	340, 1189
BbrPI	CACGTG	1 cut(s)	2036
BbsI	GAAGAC	4 cut(s)	336, 1647, 1769, 1947
Bbv12I	GWGCWC	1 cut(s)	1189
BbvCI	CCTCAGC	1 cut(s)	1161
BbvI	GCAGC	5 cut(s)	173, 634, 1598, 2381, 2460
BccI	CCATC	7 cut(s)	176, 208, 425, 830, 1448, 2028, 2398
BciT130I	CCWGG	2 cut(s)	720, 2528
BciVI	GTATCC	1 cut(s)	1766
BclI	TGATCA	2 cut(s)	1537, 1579
BcoDI	GTCTC	8 cut(s)	71, 277, 2069, 2084, 2204, 2267, 2272, 2324
BfaI	CTAG	5 cut(s)	419, 981, 999, 2301, 2660
BfmI	CTRYAG	5 cut(s)	289, 620, 2367, 2437, 2503
BfoI	RGCGCY	3 cut(s)	114, 167, 1612
BfrI	CTTAAG	1 cut(s)	2347
BfuAI	ACCTGC	2 cut(s)	1306, 2419
BfuI	GTATCC	1 cut(s)	1766
BisI	GCNGC	7 cut(s)	109, 162, 623, 1612, 2027, 2370, 2474
BlsI	GCNGC	7 cut(s)	110, 163, 624, 1613, 2028, 2371, 2475
BmcAI	AGTACT	2 cut(s)	2365, 2624
Bme1390I	CCNGG	2 cut(s)	720, 2528
Bme18I	GGWCC	3 cut(s)	716, 872, 1295
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	6 cut(s)	228, 336, 337, 716, 872, 1295
BmiI	GGNNCC	8 cut(s)	244, 338, 552, 562, 1429, 1689, 2208, 2409
BmrFI	CCNGG	2 cut(s)	720, 2528
BmrI	ACTGGG	2 cut(s)	343, 2094
BmsI	GCATC	8 cut(s)	148, 667, 1240, 1552, 2257, 2287, 2345, 2469
BmuI	ACTGGG	2 cut(s)	343, 2094
BpiI	GAAGAC	4 cut(s)	336, 1647, 1769, 1947
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 1598, 1630
BpmI	CTGGAG	1 cut(s)	2284
Bpu10I	CCTNAGC	2 cut(s)	1161, 1413
BpuEI	CTTGAG	2 cut(s)	1460, 1644
BsaAI	YACGTR	1 cut(s)	2036
BsaBI	GATNNNNATC	3 cut(s)	303, 1542, 1686
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	6 cut(s)	72, 426, 564, 719, 1365, 1602
BsaWI	WCCGGW	2 cut(s)	488, 557
BsaXI	ACNNNNNCTCC	8 cut(s)	209, 239, 1411, 1441, 1978, 2001, 2008, 2031
Bsc4I	CCNNNNNNNGG	8 cut(s)	44, 701, 869, 1304, 1945, 2104, 2158, 2262
Bse118I	RCCGGY	2 cut(s)	104, 557
Bse1I	ACTGG	8 cut(s)	338, 591, 1023, 1135, 1398, 1463, 1981, 2089
Bse21I	CCTNAGG	1 cut(s)	2550
Bse3DI	GCAATG	2 cut(s)	625, 2187
Bse8I	GATNNNNATC	3 cut(s)	303, 1542, 1686
BseBI	CCWGG	2 cut(s)	720, 2528
BseDI	CCNNGG	6 cut(s)	72, 426, 564, 719, 1365, 1602
BseGI	GGATG	9 cut(s)	187, 436, 1543, 1687, 2245, 2251, 2336, 2401, 2460
BseJI	GATNNNNATC	3 cut(s)	303, 1542, 1686
BseLI	CCNNNNNNNGG	8 cut(s)	44, 701, 869, 1304, 1945, 2104, 2158, 2262
BseMI	GCAATG	2 cut(s)	625, 2187
BseMII	CTCAG	6 cut(s)	1047, 1152, 1662, 1883, 2262, 2541
BseNI	ACTGG	8 cut(s)	338, 591, 1023, 1135, 1398, 1463, 1981, 2089
BseRI	GAGGAG	4 cut(s)	89, 450, 912, 2057
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	5 cut(s)	173, 634, 1598, 2381, 2460
BseYI	CCCAGC	2 cut(s)	1965, 2340
BsgI	GTGCAG	3 cut(s)	129, 1284, 2058
Bsh1236I	CGCG	1 cut(s)	783
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	5 cut(s)	230, 338, 1665, 1703, 2227
BshNI	GGYRCC	2 cut(s)	560, 1427
BshTI	ACCGGT	1 cut(s)	557
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	1189
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	105, 489, 558
BslFI	GGGAC	4 cut(s)	737, 1383, 1961, 2554
BslI	CCNNNNNNNGG	8 cut(s)	44, 701, 869, 1304, 1945, 2104, 2158, 2262
BsmAI	GTCTC	8 cut(s)	71, 277, 2069, 2084, 2204, 2267, 2272, 2324
BsmBI	CGTCTC	3 cut(s)	277, 2204, 2267
BsmFI	GGGAC	4 cut(s)	737, 1383, 1961, 2554
BsmI	GAATGC	2 cut(s)	1713, 2414
BsnI	GGCC	5 cut(s)	230, 338, 1665, 1703, 2227
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	599
Bsp120I	GGGCCC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	340, 1189
Bsp1407I	TGTACA	1 cut(s)	2616
BspACI	CCGC	4 cut(s)	102, 108, 416, 2026
BspANI	GGCC	5 cut(s)	230, 338, 1665, 1703, 2227
BspCNI	CTCAG	6 cut(s)	1046, 1153, 1661, 1882, 2263, 2542
BspFNI	CGCG	1 cut(s)	783
BspHI	TCATGA	1 cut(s)	1495
BspLI	GGNNCC	8 cut(s)	244, 338, 552, 562, 1429, 1689, 2208, 2409
BspMAI	CTGCAG	3 cut(s)	293, 624, 2371
BspMI	ACCTGC	2 cut(s)	1306, 2419
BspPI	GGATC	8 cut(s)	992, 1682, 1695, 1866, 2193, 2201, 2214, 2518
BspQI	GCTCTTC	2 cut(s)	120, 128
BspT107I	GGYRCC	2 cut(s)	560, 1427
BspTI	CTTAAG	1 cut(s)	2347
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	625, 2187
BsrFI	RCCGGY	2 cut(s)	104, 557
BsrGI	TGTACA	1 cut(s)	2616
BsrI	ACTGG	8 cut(s)	338, 591, 1023, 1135, 1398, 1463, 1981, 2089
BssAI	RCCGGY	2 cut(s)	104, 557
BssECI	CCNNGG	6 cut(s)	72, 426, 564, 719, 1365, 1602
BssT1I	CCWWGG	1 cut(s)	1602
Bst2UI	CCWGG	2 cut(s)	720, 2528
Bst4CI	ACNGT	7 cut(s)	381, 634, 748, 827, 1427, 2545, 2564
Bst6I	CTCTTC	5 cut(s)	120, 128, 138, 262, 1345
BstAFI	CTTAAG	1 cut(s)	2347
BstAPI	GCANNNNNTGC	1 cut(s)	2375
BstAUI	TGTACA	1 cut(s)	2616
BstBAI	YACGTR	1 cut(s)	2036
BstC8I	GCNNGC	6 cut(s)	106, 951, 1179, 1725, 1971, 2001
BstDEI	CTNAG	8 cut(s)	149, 1033, 1161, 1413, 1648, 1869, 2271, 2550
BstF5I	GGATG	9 cut(s)	187, 436, 1543, 1687, 2245, 2251, 2336, 2401, 2460
BstFNI	CGCG	1 cut(s)	783
BstH2I	RGCGCY	3 cut(s)	114, 167, 1612
BstHHI	GCGC	4 cut(s)	113, 166, 1177, 1611
BstMAI	GTCTC	8 cut(s)	71, 277, 2069, 2084, 2204, 2267, 2272, 2324
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 479, 955, 1620, 2375
BstNI	CCWGG	2 cut(s)	720, 2528
BstNSI	RCATGY	1 cut(s)	1973
BstSCI	CCNGG	2 cut(s)	718, 2526
BstSFI	CTRYAG	5 cut(s)	289, 620, 2367, 2437, 2503
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	783
BstV1I	GCAGC	5 cut(s)	173, 634, 1598, 2381, 2460
BstV2I	GAAGAC	4 cut(s)	336, 1647, 1769, 1947
BstX2I	RGATCY	6 cut(s)	984, 1687, 1858, 2185, 2206, 2523
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	6 cut(s)	984, 1687, 1858, 2185, 2206, 2523
Bsu36I	CCTNAGG	1 cut(s)	2550
BsuI	GTATCC	1 cut(s)	1766
BsuRI	GGCC	5 cut(s)	230, 338, 1665, 1703, 2227
BtsCI	GGATG	9 cut(s)	187, 436, 1543, 1687, 2245, 2251, 2336, 2401, 2460
BtsI	GCAGTG	2 cut(s)	617, 893
BtsIMutI	CAGTG	5 cut(s)	617, 753, 893, 1041, 2082
BveI	ACCTGC	2 cut(s)	1306, 2419
Cac8I	GCNNGC	6 cut(s)	106, 951, 1179, 1725, 1971, 2001
CaiI	CAGNNNCTG	3 cut(s)	1040, 1469, 2549
CciI	TCATGA	1 cut(s)	1495
CfoI	GCGC	4 cut(s)	113, 166, 1177, 1611
Cfr10I	RCCGGY	2 cut(s)	104, 557
Cfr13I	GGNCC	6 cut(s)	228, 336, 337, 716, 872, 1295
CseI	GACGC	1 cut(s)	1521
Csp6I	GTAC	6 cut(s)	917, 1428, 1436, 2364, 2617, 2623
CspAI	ACCGGT	1 cut(s)	557
CspCI	CAANNNNNGTGG	4 cut(s)	1017, 1052, 2217, 2252
CviAII	CATG	8 cut(s)	1304, 1496, 1577, 1617, 1732, 1835, 1970, 2221
CviQI	GTAC	6 cut(s)	917, 1428, 1436, 2364, 2617, 2623
DdeI	CTNAG	8 cut(s)	149, 1033, 1161, 1413, 1648, 1869, 2271, 2550
EaeI	YGGCCR	1 cut(s)	1701
Eam1104I	CTCTTC	5 cut(s)	120, 128, 138, 262, 1345
EarI	CTCTTC	5 cut(s)	120, 128, 138, 262, 1345
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	1187
Eco130I	CCWWGG	1 cut(s)	1602
Eco24I	GRGCYC	2 cut(s)	340, 1189
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	692
Eco47I	GGWCC	3 cut(s)	716, 872, 1295
Eco47III	AGCGCT	2 cut(s)	165, 1610
Eco53kI	GAGCTC	1 cut(s)	1187
Eco57I	CTGAAG	4 cut(s)	101, 109, 516, 779
Eco72I	CACGTG	1 cut(s)	2036
Eco81I	CCTNAGG	1 cut(s)	2550
Eco88I	CYCGRG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	1187
EcoO109I	RGGNCCY	2 cut(s)	337, 872
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	718, 2526
EcoRV	GATATC	1 cut(s)	692
EcoT14I	CCWWGG	1 cut(s)	1602
EcoT38I	GRGCYC	2 cut(s)	340, 1189
ErhI	CCWWGG	1 cut(s)	1602
Esp3I	CGTCTC	3 cut(s)	277, 2204, 2267
FaeI	CATG	8 cut(s)	1307, 1499, 1580, 1620, 1735, 1838, 1973, 2224
FaqI	GGGAC	4 cut(s)	737, 1383, 1961, 2554
FatI	CATG	8 cut(s)	1303, 1495, 1576, 1616, 1731, 1834, 1969, 2220
FbaI	TGATCA	2 cut(s)	1537, 1579
Fnu4HI	GCNGC	7 cut(s)	109, 162, 623, 1612, 2027, 2370, 2474
FokI	GGATG	9 cut(s)	194, 443, 1530, 1694, 2238, 2252, 2323, 2408, 2447
FriOI	GRGCYC	2 cut(s)	340, 1189
Fsp4HI	GCNGC	7 cut(s)	109, 162, 623, 1612, 2027, 2370, 2474
FspBI	CTAG	5 cut(s)	419, 981, 999, 2301, 2660
GlaI	GCGC	4 cut(s)	112, 165, 1176, 1610
GluI	GCNGC	7 cut(s)	109, 162, 623, 1612, 2027, 2370, 2474
GsaI	CCCAGC	2 cut(s)	1969, 2344
GsuI	CTGGAG	1 cut(s)	2284
HaeII	RGCGCY	3 cut(s)	114, 167, 1612
HaeIII	GGCC	5 cut(s)	230, 338, 1665, 1703, 2227
HapII	CCGG	3 cut(s)	105, 489, 558
HgaI	GACGC	1 cut(s)	1521
HhaI	GCGC	4 cut(s)	113, 166, 1177, 1611
Hin1II	CATG	8 cut(s)	1307, 1499, 1580, 1620, 1735, 1838, 1973, 2224
Hin6I	GCGC	4 cut(s)	111, 164, 1175, 1609
HinP1I	GCGC	4 cut(s)	111, 164, 1175, 1609
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	1910
HpaII	CCGG	3 cut(s)	105, 489, 558
HphI	GGTGA	6 cut(s)	25, 338, 530, 1081, 1295, 1773
Hpy166II	GTNNAC	4 cut(s)	202, 1016, 1145, 2093
Hpy8I	GTNNAC	4 cut(s)	202, 1016, 1145, 2093
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	7 cut(s)	32, 540, 754, 863, 929, 1788, 1949
HpyCH4III	ACNGT	7 cut(s)	381, 634, 748, 827, 1427, 2545, 2564
HpyCH4IV	ACGT	3 cut(s)	270, 1372, 2035
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 479, 955, 1620, 2375
HpyF3I	CTNAG	8 cut(s)	149, 1033, 1161, 1413, 1648, 1869, 2271, 2550
HpySE526I	ACGT	3 cut(s)	270, 1372, 2035
Hsp92II	CATG	8 cut(s)	1307, 1499, 1580, 1620, 1735, 1838, 1973, 2224
HspAI	GCGC	4 cut(s)	111, 164, 1175, 1609
KpnI	GGTACC	1 cut(s)	1431
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	1537, 1579
LguI	GCTCTTC	2 cut(s)	120, 128
LmnI	GCTCC	5 cut(s)	40, 1184, 1192, 1573, 1606
Lsp1109I	GCAGC	5 cut(s)	173, 634, 1598, 2381, 2460
LweI	GCATC	8 cut(s)	148, 667, 1240, 1552, 2257, 2287, 2345, 2469
MaeI	CTAG	5 cut(s)	419, 981, 999, 2301, 2660
MaeII	ACGT	3 cut(s)	270, 1372, 2035
MaeIII	GTNAC	9 cut(s)	172, 347, 439, 484, 1358, 1386, 1421, 2444, 2465
MfeI	CAATTG	1 cut(s)	1718
MflI	RGATCY	6 cut(s)	984, 1687, 1858, 2185, 2206, 2523
MhlI	GDGCHC	2 cut(s)	340, 1189
MlyI	GAGTC	3 cut(s)	447, 971, 1661
MmeI	TCCRAC	1 cut(s)	552
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	4 cut(s)	498, 1232, 2013, 2643
MseI	TTAA	8 cut(s)	477, 1473, 1625, 1793, 1799, 2348, 2495, 2594
MslI	CAYNNNNRTG	4 cut(s)	464, 1497, 1833, 2100
MspA1I	CMGCKG	2 cut(s)	2026, 2234
MspCI	CTTAAG	1 cut(s)	2347
MspI	CCGG	3 cut(s)	105, 489, 558
MspR9I	CCNGG	2 cut(s)	720, 2528
MunI	CAATTG	1 cut(s)	1718
Mva1269I	GAATGC	2 cut(s)	1713, 2414
MvaI	CCWGG	2 cut(s)	720, 2528
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	5 cut(s)	110, 479, 955, 1620, 2375
NaeI	GCCGGC	1 cut(s)	106
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	8 cut(s)	1307, 1499, 1580, 1620, 1735, 1838, 1973, 2224
NlaIV	GGNNCC	8 cut(s)	244, 338, 552, 562, 1429, 1689, 2208, 2409
NmeAIII	GCCGAG	3 cut(s)	97, 589, 1729
NmuCI	GTSAC	6 cut(s)	172, 347, 439, 484, 1358, 2465
NspI	RCATGY	1 cut(s)	1973
OliI	CACNNNNGTG	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	1973
PaeR7I	CTCGAG	1 cut(s)	599
PagI	TCATGA	1 cut(s)	1495
PciSI	GCTCTTC	2 cut(s)	120, 128
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 1483, 2282, 2440
PctI	GAATGC	2 cut(s)	1713, 2414
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	4 cut(s)	498, 1232, 2013, 2643
PfeI	GAWTC	7 cut(s)	98, 806, 1043, 1286, 1516, 1522, 2580
PfoI	TCCNGGA	1 cut(s)	2526
PinAI	ACCGGT	1 cut(s)	557
PkrI	GCNGC	7 cut(s)	110, 163, 624, 1613, 2028, 2371, 2475
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	3 cut(s)	446, 971, 1660
PmaCI	CACGTG	1 cut(s)	2036
PmlI	CACGTG	1 cut(s)	2036
PpsI	GAGTC	3 cut(s)	446, 971, 1660
Ppu21I	YACGTR	1 cut(s)	2036
PpuMI	RGGWCCY	1 cut(s)	872
PshBI	ATTAAT	2 cut(s)	1799, 2594
PsiI	TTATAA	1 cut(s)	2607
Psp124BI	GAGCTC	1 cut(s)	1189
Psp5II	RGGWCCY	1 cut(s)	872
Psp6I	CCWGG	2 cut(s)	718, 2526
PspCI	CACGTG	1 cut(s)	2036
PspFI	CCCAGC	2 cut(s)	1965, 2340
PspGI	CCWGG	2 cut(s)	718, 2526
PspN4I	GGNNCC	8 cut(s)	244, 338, 552, 562, 1429, 1689, 2208, 2409
PspOMI	GGGCCC	1 cut(s)	336
PspPI	GGNCC	6 cut(s)	228, 336, 337, 716, 872, 1295
PspPPI	RGGWCCY	1 cut(s)	872
PstI	CTGCAG	3 cut(s)	293, 624, 2371
PstNI	CAGNNNCTG	3 cut(s)	1040, 1469, 2549
PsuI	RGATCY	6 cut(s)	984, 1687, 1858, 2185, 2206, 2523
PvuI	CGATCG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	2234
RsaI	GTAC	6 cut(s)	918, 1429, 1437, 2365, 2618, 2624
RsaNI	GTAC	6 cut(s)	917, 1428, 1436, 2364, 2617, 2623
RseI	CAYNNNNRTG	4 cut(s)	464, 1497, 1833, 2100
SacI	GAGCTC	1 cut(s)	1189
SapI	GCTCTTC	2 cut(s)	120, 128
SaqAI	TTAA	8 cut(s)	477, 1473, 1625, 1793, 1799, 2348, 2495, 2594
SatI	GCNGC	7 cut(s)	109, 162, 623, 1612, 2027, 2370, 2474
Sau96I	GGNCC	6 cut(s)	228, 336, 337, 716, 872, 1295
ScaI	AGTACT	2 cut(s)	2365, 2624
SchI	GAGTC	3 cut(s)	447, 971, 1661
ScrFI	CCNGG	2 cut(s)	720, 2528
SduI	GDGCHC	2 cut(s)	340, 1189
SfaNI	GCATC	8 cut(s)	148, 667, 1240, 1552, 2257, 2287, 2345, 2469
SfcI	CTRYAG	5 cut(s)	289, 620, 2367, 2437, 2503
Sfr274I	CTCGAG	1 cut(s)	599
SgrAI	CRCCGGYG	2 cut(s)	104, 557
SinI	GGWCC	3 cut(s)	716, 872, 1295
SlaI	CTCGAG	1 cut(s)	599
SmiMI	CAYNNNNRTG	4 cut(s)	464, 1497, 1833, 2100
SmlI	CTYRAG	4 cut(s)	599, 1439, 1659, 2347
SmoI	CTYRAG	4 cut(s)	599, 1439, 1659, 2347
SphI	GCATGC	1 cut(s)	1973
SsiI	CCGC	4 cut(s)	102, 108, 416, 2026
SspI	AATATT	1 cut(s)	1552
SspMI	CTAG	5 cut(s)	419, 981, 999, 2301, 2660
SstI	GAGCTC	1 cut(s)	1189
StyD4I	CCNGG	2 cut(s)	718, 2526
StyI	CCWWGG	1 cut(s)	1602
TaaI	ACNGT	7 cut(s)	381, 634, 748, 827, 1427, 2545, 2564
TaiI	ACGT	3 cut(s)	273, 1375, 2038
TaqI	TCGA	7 cut(s)	386, 600, 688, 1207, 2115, 2559, 2578
TatI	WGTACW	4 cut(s)	1435, 2363, 2616, 2622
TauI	GCSGC	2 cut(s)	111, 2029
TfiI	GAWTC	7 cut(s)	98, 806, 1043, 1286, 1516, 1522, 2580
Tru1I	TTAA	8 cut(s)	477, 1473, 1625, 1793, 1799, 2348, 2495, 2594
Tru9I	TTAA	8 cut(s)	477, 1473, 1625, 1793, 1799, 2348, 2495, 2594
TscAI	CASTG	5 cut(s)	624, 753, 900, 1041, 2089
TseFI	GTSAC	6 cut(s)	172, 347, 439, 484, 1358, 2465
TseI	GCWGC	5 cut(s)	161, 622, 1611, 2369, 2473
Tsp45I	GTSAC	6 cut(s)	172, 347, 439, 484, 1358, 2465
TspDTI	ATGAA	8 cut(s)	304, 491, 1284, 1332, 1419, 1851, 2343, 2412
TspGWI	ACGGA	2 cut(s)	1547, 2453
TspRI	CASTG	5 cut(s)	624, 753, 900, 1041, 2089
Vha464I	CTTAAG	1 cut(s)	2347
VpaK11BI	GGWCC	3 cut(s)	716, 872, 1295
VspI	ATTAAT	2 cut(s)	1799, 2594
XapI	RAATTY	4 cut(s)	249, 968, 1231, 2639
XceI	RCATGY	1 cut(s)	1973
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1973
XhoI	CTCGAG	1 cut(s)	599
XmnI	GAANNNNTTC	4 cut(s)	498, 1232, 2013, 2643
XspI	CTAG	5 cut(s)	419, 981, 999, 2301, 2660
ZrmI	AGTACT	2 cut(s)	2365, 2624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.