Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007976

Physical Location & Seq

Genomic Coordinates Reverse (-)

32389431 .. 32390726

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG295900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTATCAGCAAACGCCTTCAAGGGGACAGGTCTTCCATAACCCAGCATGCTACTGGTTATGGGAGTTCAGGTTGGCAAGCACCTGAACAACTTCTCCATCAGCGGCAAACACGTGCAGTAGATTTATTTAGTTTAGGTTGTCTCCTCTTTTTCTGTCTCACTGGGGGTAAACACCCTTATGGGGATAGTATCGAGCGTGATGTGAATATAGTGAATGACCGGAAAGACCTATTCTTGGTAGAGAATATACCAGAAGCAATGGATCTTTTTACTCGTCTCTTGGATCCCAACCCTGACATGAGGCCAACAGCTGTGGATGTGTTGCATCATCCCTTTTTCTGGAGTTCTGAGACAAGACTTTCGTTTCTGCGTGATGCTAGTGATCGGGTTGAATTGGAGGATAGGGAGACTGCATCCCAACTCTTAAGTTCATTAGAAAGCACTGCAGCAGTTGCTCTAAATGGTAAGTGGGATGAAAAGATGGAACCTGCATTCCTCAATAACATTGGTCGCTACAGGCGTTACAAGTTTGACAGCATCCGTGACTTGCTGCGTGTAATAAGGAACAAGTTAAATCACTACAGAGAACTTCCCCAAGAGATCCAGGAATTATTGGGGACAGTTCCTGAGGGCTTCGACAGTTATTTTTCAAGTCGATTCCCTAAATTATTAATCAAGGTTTATAATGTGTTGTACAAGTACTGCAAAGAGGAGGAATTTTTTCGCAAGTATATACAAGGCAAATCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006983 GO:0006984 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010506 GO:0010508 GO:0012505 GO:0014070 GO:0016020 GO:0016070 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0033554 GO:0034263 GO:0034641 GO:0034976 GO:0035966 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071216 GO:0071704 GO:0090304 GO:0098542 GO:0098827 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010

Pfam Domains

Protein Families

PQQ Pkinase Ribonuc_2-5A

Protein Analysis

251

Amino Acids

29.16

Weight (kDa)

6.61

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 114	7.9e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 108	7.6e-07	Protein tyrosine and serine/threonine kinase
Ribonuc_2-5A	PF06479	120 - 245	1.9e-47	Ribonuclease 2-5A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24360 AT5G24360 AT5G24360
fragaria_vesca	FvH4_5g25750 FvH4_5g25750
malus_domestica	MD06G1007000.v1.1
prunus_persica	Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1
pyrus_communis	pycom02g08890 pycom06g00610
rosa_chinensis	RchiOBHm_Chr7g0216101
rosa_laevigata	RLG00000002594
rosa_multiflora	Rmu_co8312507.1_g000001 Rmu_sc0009767.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243650
rosa_rugosa	Rorug07G0158900 Rorug07G0158900
rosa_samantha	Rh7AG295900 Rh7AG296000 Rh7BG288300 Rh7CG316300 Rh7DG298800
rosa_wichuraiana	Rw7G025170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
Acc36I	ACCTGC	1 cut(s)	499
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	4 cut(s)	273, 281, 294, 598
AcsI	RAATTY	1 cut(s)	719
AcvI	CACGTG	1 cut(s)	116
AfaI	GTAC	2 cut(s)	698, 704
AfiI	CCNNNNNNNGG	4 cut(s)	25, 184, 238, 342
AflII	CTTAAG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	23, 395, 654
AjnI	CCWGG	1 cut(s)	606
AloI	GAACNNNNNNTCC	4 cut(s)	81, 113, 480, 512
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	5 cut(s)	149, 164, 284, 347, 404
AlwI	GGATC	4 cut(s)	273, 281, 294, 598
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	449, 553
ApoI	RAATTY	1 cut(s)	719
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AseI	ATTAAT	1 cut(s)	674
Asp700I	GAANNNNTTC	2 cut(s)	93, 723
AxyI	CCTNAGG	1 cut(s)	630
BamHI	GGATCC	1 cut(s)	286
BbrPI	CACGTG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	461, 540
BccI	CCATC	2 cut(s)	108, 478
BciT130I	CCWGG	1 cut(s)	608
BcoDI	GTCTC	5 cut(s)	149, 164, 284, 347, 404
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	3 cut(s)	447, 517, 583
BfrI	CTTAAG	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	3 cut(s)	107, 450, 554
BlsI	GCNGC	3 cut(s)	108, 451, 555
BmcAI	AGTACT	1 cut(s)	704
Bme1390I	CCNGG	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	288, 489
BmrFI	CCNGG	1 cut(s)	608
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	4 cut(s)	337, 367, 425, 549
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 81, 88, 111
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 184, 238, 342
Bse1I	ACTGG	2 cut(s)	61, 169
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	608
BseGI	GGATG	5 cut(s)	325, 331, 416, 481, 540
BseLI	CCNNNNNNNGG	4 cut(s)	25, 184, 238, 342
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	342, 621
BseNI	ACTGG	2 cut(s)	61, 169
BseRI	GAGGAG	2 cut(s)	137, 728
BseXI	GCAGC	2 cut(s)	461, 540
BseYI	CCCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	2 cut(s)	41, 634
BslI	CCNNNNNNNGG	4 cut(s)	25, 184, 238, 342
BsmAI	GTCTC	5 cut(s)	149, 164, 284, 347, 404
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	41, 634
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	307
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	4 cut(s)	265, 286, 385, 603
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	2 cut(s)	343, 622
BspLI	GGNNCC	2 cut(s)	288, 489
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	4 cut(s)	273, 281, 294, 598
BspTI	CTTAAG	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	2 cut(s)	61, 169
BssMI	GATC	4 cut(s)	265, 286, 385, 603
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	625, 644
BstAFI	CTTAAG	1 cut(s)	427
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	696
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	51, 81
BstDEI	CTNAG	2 cut(s)	351, 630
BstF5I	GGATG	5 cut(s)	325, 331, 416, 481, 540
BstKTI	GATC	4 cut(s)	268, 289, 388, 606
BstMAI	GTCTC	5 cut(s)	149, 164, 284, 347, 404
BstMBI	GATC	4 cut(s)	265, 286, 385, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	3 cut(s)	447, 517, 583
BstV1I	GCAGC	2 cut(s)	461, 540
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	3 cut(s)	265, 286, 603
BstYI	RGATCY	3 cut(s)	265, 286, 603
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	307
BtsCI	GGATG	5 cut(s)	325, 331, 416, 481, 540
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	162, 444
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	2 cut(s)	51, 81
CaiI	CAGNNNCTG	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	697, 703
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	2 cut(s)	50, 301
CviJI	RGCY	3 cut(s)	307, 314, 636
CviKI_1	RGCY	3 cut(s)	307, 314, 636
CviQI	GTAC	2 cut(s)	697, 703
DdeI	CTNAG	2 cut(s)	351, 630
DpnI	GATC	4 cut(s)	267, 288, 387, 605
DpnII	GATC	4 cut(s)	265, 286, 385, 603
Eco72I	CACGTG	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	630
EcoRII	CCWGG	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	2 cut(s)	53, 304
FaqI	GGGAC	2 cut(s)	41, 634
FatI	CATG	2 cut(s)	49, 300
Fnu4HI	GCNGC	3 cut(s)	107, 450, 554
FokI	GGATG	5 cut(s)	318, 332, 403, 488, 527
Fsp4HI	GCNGC	3 cut(s)	107, 450, 554
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	107, 450, 554
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	2 cut(s)	53, 304
HinfI	GANTC	1 cut(s)	660
HpaII	CCGG	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	343, 629
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	625, 644
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	6 cut(s)	119, 328, 416, 449, 494, 708
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	351, 630
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	53, 304
Kzo9I	GATC	4 cut(s)	265, 286, 385, 603
Lsp1109I	GCAGC	2 cut(s)	461, 540
LweI	GCATC	4 cut(s)	337, 367, 425, 549
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	524, 545
MalI	GATC	4 cut(s)	267, 288, 387, 605
MboI	GATC	4 cut(s)	265, 286, 385, 603
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	3 cut(s)	265, 286, 603
MluCI	AATT	4 cut(s)	395, 611, 668, 719
MnlI	CCTC	7 cut(s)	158, 297, 394, 509, 625, 706, 709
MroXI	GAANNNNTTC	2 cut(s)	93, 723
MseI	TTAA	3 cut(s)	428, 575, 674
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	106, 314
MspCI	CTTAAG	1 cut(s)	427
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	4 cut(s)	265, 286, 385, 603
NlaIII	CATG	2 cut(s)	53, 304
NlaIV	GGNNCC	2 cut(s)	288, 489
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PctI	GAATGC	1 cut(s)	494
PdmI	GAANNNNTTC	2 cut(s)	93, 723
PfeI	GAWTC	1 cut(s)	660
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	3 cut(s)	108, 451, 555
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	674
PsiI	TTATAA	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	606
PspCI	CACGTG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	288, 489
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	3 cut(s)	265, 286, 603
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	698, 704
RsaNI	GTAC	2 cut(s)	697, 703
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	428, 575, 674
SatI	GCNGC	3 cut(s)	107, 450, 554
Sau3AI	GATC	4 cut(s)	265, 286, 385, 603
ScaI	AGTACT	1 cut(s)	704
ScrFI	CCNGG	1 cut(s)	608
SetI	ASST	9 cut(s)	35, 76, 88, 118, 142, 234, 316, 493, 684
SfaNI	GCATC	4 cut(s)	337, 367, 425, 549
SfcI	CTRYAG	3 cut(s)	447, 517, 583
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	395, 611, 668, 719
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	625, 644
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	195, 639, 658
TasI	AATT	4 cut(s)	395, 611, 668, 719
TatI	WGTACW	2 cut(s)	696, 702
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	660
Tru1I	TTAA	3 cut(s)	428, 575, 674
Tru9I	TTAA	3 cut(s)	428, 575, 674
TscAI	CASTG	2 cut(s)	169, 451
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	449, 553
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	2 cut(s)	423, 492
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	169, 451
Vha464I	CTTAAG	1 cut(s)	427
VspI	ATTAAT	1 cut(s)	674
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmnI	GAANNNNTTC	2 cut(s)	93, 723
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.