Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007976

Physical Location & Seq

Genomic Coordinates Reverse (-)

33742993 .. 33747066

Gene Structure 4074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGAGACGATCGGTGATCTTCCTTCTCCTATTTGCTCCCTTGATCGGCTGTTTCGTCAAGTCTGGTTCAGCCGAGGAGACTTCCCTCGCCAATTCAGATTCCGCCGGCGGCGCTCTTCAGCTCTTCAGCTCTCTTCTGCCTCCTGCACTTAGGAATGATGCAGCGCTTTTGGTCACATTGGATGGCAAGGTAGTTTCTGTCAACCCCAAGACGATGGAGATTGAGTGGGCCTTGTCCTCTGGTTCCCGAATTCACTCTTCCTATCAGAACGTCTCTTATTTCAACAACTGCAGGAGTGATGATGATGATGATGATCACTCTTTCATTGATATTGGTGAAGACTGGGCCCTCTATCGAACCAGCAACACCAACAAGAAGAAGAAGAAGAAACTGTCGTCGAGTATTAGAGAATATGTTGCAACTACTCCGCTAGTTTCTGAGGATGGAGGAGTCACATTGGGGTCAAAGATCACTAAAGTGTTTGCTGTTAATGCTGTGACCGGACAAGTAATACATAGTTTTAGGTTGGGTGATAATACTCCTTCAGCTACTTTAGGTATGGAACCCACCGGTGCTGAGGGGTTGGAAACATCTGGACTGGTGTTGTATCTCGAGAGAACAGATTACACACTGCAGCATTGTACAGTCAAGGGCGATCTTCTGTGGAAATTAGAAATTGCAGAGTTTGATGCTCACTTTCGATATCCTAAAATTGGAAATGGGCTTGGTCCAGAGGACAGGCTCATTGCTAACTCAACAGTGCCTTATCAGAAGGAGAAGCCTGTTGTCATTCGGGTTCCTTATCCTAGCTTGGTAGAATCTCGTTCTGTAATTGACGGTCTAACTGATGGGTATTATGGAGGCAAACCTCTCCCCCTTGAAGGCCCTCATAACAATCTTCTGGCACTGCCTTTTGACAAAGGTGCTGTACCTCCTCACAACAATGAAGGCAGAGAAATGCTTGCTTTGCCCTCTCTTGAATTTGTGGACTCTAGGATCTTGGCTCTCCCTACTAGAGATGTTGGTAAACCGGACATCACAAGCTCAGTGGCTGAATCTATTACTAACTTCCCCATACAATCTCTTTTTGTATTTCTTCTCACCCTATTATCCATTCTGGGATATATCTTTCGTTTTCTGACTGGAAAACAGCGTAAACTGAAAGTGGTGGCTGAGGAAACTAAAGCGCAAGCAGGAGCTCCCAAGAAGAAGAAAACTCGAAGATTGGGAAATAATAAGAAGAATTTCAGTTATGAGAAAGACGCAAGAAATATGTCATATGAATATAAGTTTGGTGAATCTAATGGACCTGCACATGGGGAAAGAAATGAAACAAAATTGCTCTTGACCTCTTCTGATTTTATTGATCGTGACACCGAGGGACGTAGGATTGGCAAGTTACTTGTTTCCAGTAATGAAATTGCTAAGGGGAGTAACGGTACCATTGTACTTGAGGGTATCTACGATGGTCGTCCAGTAGCTGTTAAACGCCTTGTGCGAACTCATCATGATGTGGCTTTGAAAGAGATTCAGAATCTTATTGCATCTGATCAGCATCCAAATATTGTCCGTTGGTATGGCATGGAGCATGATCAAGATTTTGTCTATCTATCCTTGGAGCGCTGCTCATGTAGCTTAAATGACTTGATTTATTATTACTCAGAGTCTTCTCAAGGGCAAATTATCAACAAGGATGAGGATCCTCACTTTTTGGCCGAGTATCGCAGTCAATTGCAGGCAATCATGGGAAAGAACAAGAATGTTGAATTGTGGAAGACAAATGGATACCCTTCACCCCAAATGTTAAAATTAATGAGTGATCTTGTTTCTGGACTTGCCCATTTGCATGAACTTGGAATTATACATCGGGATCTAAAGCCTCAGAATGTTTTGATAATCAAAGGCAGATCGTTATGTGCCAAGCTTTCAGATATGGGTATCAGCAAACGCCTTCAAGGGGACAGGTCTTCCATAACCCAGCATGCTACTGGTTATGGGAGTTCAGGTTGGCAAGCACCTGAACAACTTCTCCATCAGCGGCAAACACGTGCAGTAGATTTATTTAGTTTAGGTTGTCTCCTCTTTTTCTGTCTCACTGGGGGTAAACACCCTTATGGGGATAGTATCGAGCGTGATGTGAATATAGTGAATGACCGGAAAGACCTATTCTTGGTAGAGAATATACCAGAAGCAATGGATCTTTTTACTCGTCTCTTGGATCCCAACCCTGACATGAGGCCAACAGCTGTGGATGTGTTGCATCATCCCTTTTTCTGGAGTTCTGAGACAAGACTTTCGTTTCTGCGTGATGCTAGTGATCGGGTTGAATTGGAGGATAGGGAGACTGCATCCCAACTCTTAAGTTCATTAGAAAGCACTGCAGCAGTTGCTCTAAATGGTAAGTGGGATGAAAAGATGGAACCTGCATTCCTCAATAACATTGGTCGCTACAGGCGTTACAAGTTTGACAGCATCCGTGACTTGCTGCGTGTAATAAGGAACAAGTTAAATCACTACAGAGAACTTCCCCAAGAGATCCAGGAATTATTGGGGACAGTTCCTGAGGGCTTCGACAGTTATTTTTCAAGTCGATTCCCTAAATTATTAATCAAGGTTTATAATGTGTTGTACAAGTACTGCAAAGAGGAGGAATTTTTTCGCAAGTATATACAAGGCAAATCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006983 GO:0006984 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010506 GO:0010508 GO:0012505 GO:0014070 GO:0016020 GO:0016070 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0033554 GO:0034263 GO:0034641 GO:0034976 GO:0035966 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071216 GO:0071704 GO:0090304 GO:0098542 GO:0098827 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010

Pfam Domains

Protein Families

PQQ Pkinase Ribonuc_2-5A

Protein Analysis

895

Amino Acids

100.64

Weight (kDa)

7.09

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	471 - 752	1.1e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	472 - 758	2.8e-37	Protein kinase domain
Ribonuc_2-5A	PF06479	764 - 889	2.1e-46	Ribonuclease 2-5A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24360 AT5G24360 AT5G24360
fragaria_vesca	FvH4_5g25750 FvH4_5g25750
malus_domestica	MD06G1007000.v1.1
prunus_persica	Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1 Prupe.5G008100_v2.0.a1
pyrus_communis	pycom02g08890 pycom06g00610
rosa_chinensis	RchiOBHm_Chr7g0216101
rosa_laevigata	RLG00000002594
rosa_multiflora	Rmu_co8312507.1_g000001 Rmu_sc0009767.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243650
rosa_rugosa	Rorug07G0158900 Rorug07G0158900
rosa_samantha	Rh7AG295900 Rh7AG296000 Rh7BG288300 Rh7CG316300 Rh7DG298800
rosa_wichuraiana	Rw7G025170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2619
Acc36I	ACCTGC	2 cut(s)	1318, 2431
Acc65I	GGTACC	1 cut(s)	1439
AccB1I	GGYRCC	1 cut(s)	1439
AciI	CCGC	4 cut(s)	102, 108, 428, 2038
AclWI	GGATC	8 cut(s)	1004, 1694, 1707, 1878, 2205, 2213, 2226, 2530
AcoI	YGGCCR	1 cut(s)	1713
AcsI	RAATTY	4 cut(s)	249, 980, 1243, 2651
AcuI	CTGAAG	3 cut(s)	101, 109, 528
AcvI	CACGTG	1 cut(s)	2048
AfaI	GTAC	6 cut(s)	643, 930, 1441, 1449, 2630, 2636
AfeI	AGCGCT	2 cut(s)	165, 1622
AfiI	CCNNNNNNNGG	8 cut(s)	44, 713, 881, 1316, 1957, 2116, 2170, 2274
AflII	CTTAAG	1 cut(s)	2359
AflIII	ACRYGT	1 cut(s)	2045
AgeI	ACCGGT	1 cut(s)	569
AgsI	TTSAA	8 cut(s)	283, 881, 980, 1522, 1766, 1955, 2327, 2586
AjnI	CCWGG	1 cut(s)	2538
AjuI	GAANNNNNNNTTGG	2 cut(s)	1275, 1307
AleI	CACNNNNGTG	1 cut(s)	476
AloI	GAACNNNNNNTCC	4 cut(s)	2013, 2045, 2412, 2444
Alw21I	GWGCWC	1 cut(s)	1201
Alw26I	GTCTC	7 cut(s)	71, 277, 2081, 2096, 2216, 2279, 2336
AlwI	GGATC	8 cut(s)	1004, 1694, 1707, 1878, 2205, 2213, 2226, 2530
AlwNI	CAGNNNCTG	3 cut(s)	1052, 1481, 2561
Ama87I	CYCGRG	1 cut(s)	611
Aor51HI	AGCGCT	2 cut(s)	165, 1622
AoxI	GGCC	5 cut(s)	228, 345, 883, 1713, 2237
ApaI	GGGCCC	1 cut(s)	349
ApeKI	GCWGC	5 cut(s)	161, 634, 1623, 2381, 2485
ApoI	RAATTY	4 cut(s)	249, 980, 1243, 2651
ArsI	GACNNNNNNTTYG	2 cut(s)	2278, 2310
AseI	ATTAAT	2 cut(s)	1811, 2606
AsiGI	ACCGGT	1 cut(s)	569
Asp700I	GAANNNNTTC	3 cut(s)	1244, 2025, 2655
Asp718I	GGTACC	1 cut(s)	1439
AspLEI	GCGC	4 cut(s)	113, 166, 1189, 1623
AspS9I	GGNCC	6 cut(s)	228, 345, 346, 728, 884, 1307
AsuHPI	GGTGA	6 cut(s)	25, 347, 542, 1093, 1307, 1785
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	728, 1307
AxyI	CCTNAGG	1 cut(s)	2562
BaeGI	GKGCMC	1 cut(s)	349
BaeI	ACNNNNGTAYC	2 cut(s)	1431, 1464
BamHI	GGATCC	2 cut(s)	1699, 2218
BanI	GGYRCC	1 cut(s)	1439
BanII	GRGCYC	2 cut(s)	349, 1201
BbrPI	CACGTG	1 cut(s)	2048
BbsI	GAAGAC	4 cut(s)	345, 1659, 1781, 1959
Bbv12I	GWGCWC	1 cut(s)	1201
BbvCI	CCTCAGC	2 cut(s)	576, 1173
BbvI	GCAGC	5 cut(s)	173, 646, 1610, 2393, 2472
BccI	CCATC	7 cut(s)	176, 208, 437, 842, 1460, 2040, 2410
BciT130I	CCWGG	1 cut(s)	2540
BciVI	GTATCC	1 cut(s)	1778
BclI	TGATCA	3 cut(s)	313, 1549, 1591
BcoDI	GTCTC	7 cut(s)	71, 277, 2081, 2096, 2216, 2279, 2336
BfaI	CTAG	5 cut(s)	431, 807, 993, 1014, 2313
BfmI	CTRYAG	5 cut(s)	289, 632, 2379, 2449, 2515
BfoI	RGCGCY	3 cut(s)	114, 167, 1624
BfrI	CTTAAG	1 cut(s)	2359
BfuAI	ACCTGC	2 cut(s)	1318, 2431
BfuI	GTATCC	1 cut(s)	1778
BisI	GCNGC	7 cut(s)	109, 162, 635, 1624, 2039, 2382, 2486
BlsI	GCNGC	7 cut(s)	110, 163, 636, 1625, 2040, 2383, 2487
BmcAI	AGTACT	1 cut(s)	2636
Bme1390I	CCNGG	1 cut(s)	2540
Bme18I	GGWCC	2 cut(s)	728, 1307
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	6 cut(s)	228, 345, 346, 728, 884, 1307
BmiI	GGNNCC	8 cut(s)	244, 347, 564, 798, 1441, 1701, 2220, 2421
BmrFI	CCNGG	1 cut(s)	2540
BmrI	ACTGGG	2 cut(s)	352, 2106
BmsI	GCATC	8 cut(s)	148, 679, 1553, 1564, 2269, 2299, 2357, 2481
BmuI	ACTGGG	2 cut(s)	352, 2106
BpiI	GAAGAC	4 cut(s)	345, 1659, 1781, 1959
BplI	GAGNNNNNCTC	2 cut(s)	1610, 1642
BpmI	CTGGAG	1 cut(s)	2296
Bpu10I	CCTNAGC	3 cut(s)	576, 1173, 1425
BpuEI	CTTGAG	2 cut(s)	1472, 1656
BsaAI	YACGTR	1 cut(s)	2048
BsaBI	GATNNNNATC	3 cut(s)	312, 1554, 1698
BsaJI	CCNNGG	3 cut(s)	72, 1377, 1614
BsaWI	WCCGGW	4 cut(s)	500, 569, 1030, 2154
BsaXI	ACNNNNNCTCC	8 cut(s)	209, 239, 1423, 1453, 1990, 2013, 2020, 2043
Bsc4I	CCNNNNNNNGG	8 cut(s)	44, 713, 881, 1316, 1957, 2116, 2170, 2274
Bse118I	RCCGGY	2 cut(s)	104, 569
Bse1I	ACTGG	7 cut(s)	347, 603, 1147, 1410, 1475, 1993, 2101
Bse21I	CCTNAGG	1 cut(s)	2562
Bse3DI	GCAATG	2 cut(s)	744, 2199
Bse8I	GATNNNNATC	3 cut(s)	312, 1554, 1698
BseBI	CCWGG	1 cut(s)	2540
BseDI	CCNNGG	3 cut(s)	72, 1377, 1614
BseGI	GGATG	9 cut(s)	187, 448, 1555, 1699, 2257, 2263, 2348, 2413, 2472
BseJI	GATNNNNATC	3 cut(s)	312, 1554, 1698
BseLI	CCNNNNNNNGG	8 cut(s)	44, 713, 881, 1316, 1957, 2116, 2170, 2274
BseMI	GCAATG	2 cut(s)	744, 2199
BseMII	CTCAG	8 cut(s)	429, 567, 1059, 1164, 1674, 1895, 2274, 2553
BseNI	ACTGG	7 cut(s)	347, 603, 1147, 1410, 1475, 1993, 2101
BseRI	GAGGAG	5 cut(s)	89, 462, 924, 2069, 2660
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	5 cut(s)	173, 646, 1610, 2393, 2472
BseYI	CCCAGC	1 cut(s)	1977
BsgI	GTGCAG	3 cut(s)	129, 1296, 2070
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	5 cut(s)	230, 347, 885, 1715, 2239
BshNI	GGYRCC	1 cut(s)	1439
BshTI	ACCGGT	1 cut(s)	569
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	1201
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	5 cut(s)	105, 501, 570, 1031, 2155
BslFI	GGGAC	3 cut(s)	1395, 1973, 2566
BslI	CCNNNNNNNGG	8 cut(s)	44, 713, 881, 1316, 1957, 2116, 2170, 2274
BsmAI	GTCTC	7 cut(s)	71, 277, 2081, 2096, 2216, 2279, 2336
BsmBI	CGTCTC	2 cut(s)	277, 2216
BsmFI	GGGAC	3 cut(s)	1395, 1973, 2566
BsmI	GAATGC	1 cut(s)	2426
BsnI	GGCC	5 cut(s)	230, 347, 885, 1715, 2239
BsoBI	CYCGRG	1 cut(s)	611
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	349, 1201
Bsp1407I	TGTACA	2 cut(s)	641, 2628
BspACI	CCGC	4 cut(s)	102, 108, 428, 2038
BspANI	GGCC	5 cut(s)	230, 347, 885, 1715, 2239
BspCNI	CTCAG	8 cut(s)	430, 568, 1058, 1165, 1673, 1894, 2275, 2554
BspHI	TCATGA	1 cut(s)	1507
BspLI	GGNNCC	8 cut(s)	244, 347, 564, 798, 1441, 1701, 2220, 2421
BspMAI	CTGCAG	3 cut(s)	293, 636, 2383
BspMI	ACCTGC	2 cut(s)	1318, 2431
BspPI	GGATC	8 cut(s)	1004, 1694, 1707, 1878, 2205, 2213, 2226, 2530
BspQI	GCTCTTC	2 cut(s)	120, 128
BspT107I	GGYRCC	1 cut(s)	1439
BspTI	CTTAAG	1 cut(s)	2359
BsrDI	GCAATG	2 cut(s)	744, 2199
BsrFI	RCCGGY	2 cut(s)	104, 569
BsrGI	TGTACA	2 cut(s)	641, 2628
BsrI	ACTGG	7 cut(s)	347, 603, 1147, 1410, 1475, 1993, 2101
BssAI	RCCGGY	2 cut(s)	104, 569
BssECI	CCNNGG	3 cut(s)	72, 1377, 1614
BssT1I	CCWWGG	1 cut(s)	1614
Bst2UI	CCWGG	1 cut(s)	2540
Bst4CI	ACNGT	7 cut(s)	393, 646, 760, 839, 1439, 2557, 2576
Bst6I	CTCTTC	5 cut(s)	120, 128, 138, 262, 1357
BstAFI	CTTAAG	1 cut(s)	2359
BstAPI	GCANNNNNTGC	1 cut(s)	2387
BstAUI	TGTACA	2 cut(s)	641, 2628
BstBAI	YACGTR	1 cut(s)	2048
BstC8I	GCNNGC	6 cut(s)	106, 963, 1191, 1737, 1983, 2013
BstF5I	GGATG	9 cut(s)	187, 448, 1555, 1699, 2257, 2263, 2348, 2413, 2472
BstH2I	RGCGCY	3 cut(s)	114, 167, 1624
BstHHI	GCGC	4 cut(s)	113, 166, 1189, 1623
BstMAI	GTCTC	7 cut(s)	71, 277, 2081, 2096, 2216, 2279, 2336
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 491, 967, 1632, 2387
BstNI	CCWGG	1 cut(s)	2540
BstNSI	RCATGY	1 cut(s)	1985
BstSCI	CCNGG	1 cut(s)	2538
BstSFI	CTRYAG	5 cut(s)	289, 632, 2379, 2449, 2515
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	5 cut(s)	173, 646, 1610, 2393, 2472
BstV2I	GAAGAC	4 cut(s)	345, 1659, 1781, 1959
BstX2I	RGATCY	6 cut(s)	996, 1699, 1870, 2197, 2218, 2535
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	6 cut(s)	996, 1699, 1870, 2197, 2218, 2535
Bsu36I	CCTNAGG	1 cut(s)	2562
BsuI	GTATCC	1 cut(s)	1778
BsuRI	GGCC	5 cut(s)	230, 347, 885, 1715, 2239
BtsCI	GGATG	9 cut(s)	187, 448, 1555, 1699, 2257, 2263, 2348, 2413, 2472
BtsI	GCAGTG	3 cut(s)	629, 905, 2376
BtsIMutI	CAGTG	6 cut(s)	629, 765, 905, 1053, 2094, 2376
BveI	ACCTGC	2 cut(s)	1318, 2431
Cac8I	GCNNGC	6 cut(s)	106, 963, 1191, 1737, 1983, 2013
CaiI	CAGNNNCTG	3 cut(s)	1052, 1481, 2561
CciI	TCATGA	1 cut(s)	1507
CfoI	GCGC	4 cut(s)	113, 166, 1189, 1623
Cfr10I	RCCGGY	2 cut(s)	104, 569
Cfr13I	GGNCC	6 cut(s)	228, 345, 346, 728, 884, 1307
CseI	GACGC	1 cut(s)	1271
Csp6I	GTAC	6 cut(s)	642, 929, 1440, 1448, 2629, 2635
CspAI	ACCGGT	1 cut(s)	569
CspCI	CAANNNNNGTGG	4 cut(s)	1029, 1064, 2229, 2264
CviAII	CATG	9 cut(s)	1316, 1508, 1582, 1589, 1629, 1744, 1847, 1982, 2233
CviQI	GTAC	6 cut(s)	642, 929, 1440, 1448, 2629, 2635
EaeI	YGGCCR	1 cut(s)	1713
Eam1104I	CTCTTC	5 cut(s)	120, 128, 138, 262, 1357
EarI	CTCTTC	5 cut(s)	120, 128, 138, 262, 1357
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	1199
Eco130I	CCWWGG	1 cut(s)	1614
Eco24I	GRGCYC	2 cut(s)	349, 1201
Eco32I	GATATC	1 cut(s)	704
Eco47I	GGWCC	2 cut(s)	728, 1307
Eco47III	AGCGCT	2 cut(s)	165, 1622
Eco53kI	GAGCTC	1 cut(s)	1199
Eco57I	CTGAAG	3 cut(s)	101, 109, 528
Eco72I	CACGTG	1 cut(s)	2048
Eco81I	CCTNAGG	1 cut(s)	2562
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	1199
EcoO109I	RGGNCCY	2 cut(s)	346, 884
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	2538
EcoRV	GATATC	1 cut(s)	704
EcoT14I	CCWWGG	1 cut(s)	1614
EcoT38I	GRGCYC	2 cut(s)	349, 1201
ErhI	CCWWGG	1 cut(s)	1614
Esp3I	CGTCTC	2 cut(s)	277, 2216
FaeI	CATG	9 cut(s)	1319, 1511, 1585, 1592, 1632, 1747, 1850, 1985, 2236
FaqI	GGGAC	3 cut(s)	1395, 1973, 2566
FatI	CATG	9 cut(s)	1315, 1507, 1581, 1588, 1628, 1743, 1846, 1981, 2232
FauNDI	CATATG	1 cut(s)	1279
FbaI	TGATCA	3 cut(s)	313, 1549, 1591
Fnu4HI	GCNGC	7 cut(s)	109, 162, 635, 1624, 2039, 2382, 2486
FokI	GGATG	9 cut(s)	194, 455, 1542, 1706, 2250, 2264, 2335, 2420, 2459
FriOI	GRGCYC	2 cut(s)	349, 1201
Fsp4HI	GCNGC	7 cut(s)	109, 162, 635, 1624, 2039, 2382, 2486
FspBI	CTAG	5 cut(s)	431, 807, 993, 1014, 2313
GlaI	GCGC	4 cut(s)	112, 165, 1188, 1622
GluI	GCNGC	7 cut(s)	109, 162, 635, 1624, 2039, 2382, 2486
GsaI	CCCAGC	1 cut(s)	1981
GsuI	CTGGAG	1 cut(s)	2296
HaeII	RGCGCY	3 cut(s)	114, 167, 1624
HaeIII	GGCC	5 cut(s)	230, 347, 885, 1715, 2239
HapII	CCGG	5 cut(s)	105, 501, 570, 1031, 2155
HgaI	GACGC	1 cut(s)	1271
HhaI	GCGC	4 cut(s)	113, 166, 1189, 1623
Hin1II	CATG	9 cut(s)	1319, 1511, 1585, 1592, 1632, 1747, 1850, 1985, 2236
Hin6I	GCGC	4 cut(s)	111, 164, 1187, 1621
HinP1I	GCGC	4 cut(s)	111, 164, 1187, 1621
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	1922
HpaII	CCGG	5 cut(s)	105, 501, 570, 1031, 2155
HphI	GGTGA	6 cut(s)	25, 347, 542, 1093, 1307, 1785
Hpy166II	GTNNAC	5 cut(s)	202, 988, 1028, 1157, 2105
Hpy8I	GTNNAC	5 cut(s)	202, 988, 1028, 1157, 2105
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	7 cut(s)	32, 552, 766, 875, 941, 1800, 1961
HpyCH4III	ACNGT	7 cut(s)	393, 646, 760, 839, 1439, 2557, 2576
HpyCH4IV	ACGT	3 cut(s)	270, 1384, 2047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 491, 967, 1632, 2387
HpySE526I	ACGT	3 cut(s)	270, 1384, 2047
Hsp92II	CATG	9 cut(s)	1319, 1511, 1585, 1592, 1632, 1747, 1850, 1985, 2236
HspAI	GCGC	4 cut(s)	111, 164, 1187, 1621
KpnI	GGTACC	1 cut(s)	1443
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	3 cut(s)	313, 1549, 1591
LguI	GCTCTTC	2 cut(s)	120, 128
LmnI	GCTCC	5 cut(s)	40, 1196, 1204, 1585, 1618
Lsp1109I	GCAGC	5 cut(s)	173, 646, 1610, 2393, 2472
LweI	GCATC	8 cut(s)	148, 679, 1553, 1564, 2269, 2299, 2357, 2481
MaeI	CTAG	5 cut(s)	431, 807, 993, 1014, 2313
MaeII	ACGT	3 cut(s)	270, 1384, 2047
MaeIII	GTNAC	8 cut(s)	172, 451, 496, 1370, 1398, 1433, 2456, 2477
MfeI	CAATTG	1 cut(s)	1730
MflI	RGATCY	6 cut(s)	996, 1699, 1870, 2197, 2218, 2535
MhlI	GDGCHC	2 cut(s)	349, 1201
MlyI	GAGTC	3 cut(s)	459, 983, 1673
MmeI	TCCRAC	1 cut(s)	564
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	3 cut(s)	1244, 2025, 2655
MseI	TTAA	8 cut(s)	489, 1485, 1637, 1805, 1811, 2360, 2507, 2606
MslI	CAYNNNNRTG	5 cut(s)	476, 942, 1509, 1845, 2112
MspA1I	CMGCKG	2 cut(s)	2038, 2246
MspCI	CTTAAG	1 cut(s)	2359
MspI	CCGG	5 cut(s)	105, 501, 570, 1031, 2155
MspR9I	CCNGG	1 cut(s)	2540
MunI	CAATTG	1 cut(s)	1730
Mva1269I	GAATGC	1 cut(s)	2426
MvaI	CCWGG	1 cut(s)	2540
MwoI	GCNNNNNNNGC	5 cut(s)	110, 491, 967, 1632, 2387
NaeI	GCCGGC	1 cut(s)	106
NdeI	CATATG	1 cut(s)	1279
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	9 cut(s)	1319, 1511, 1585, 1592, 1632, 1747, 1850, 1985, 2236
NlaIV	GGNNCC	8 cut(s)	244, 347, 564, 798, 1441, 1701, 2220, 2421
NmeAIII	GCCGAG	2 cut(s)	97, 1741
NmuCI	GTSAC	5 cut(s)	172, 451, 496, 1370, 2477
NspI	RCATGY	1 cut(s)	1985
OliI	CACNNNNGTG	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	1985
PaeR7I	CTCGAG	1 cut(s)	611
PagI	TCATGA	1 cut(s)	1507
PciSI	GCTCTTC	2 cut(s)	120, 128
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 1495, 2452
PctI	GAATGC	1 cut(s)	2426
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	3 cut(s)	1244, 2025, 2655
PfeI	GAWTC	7 cut(s)	98, 818, 1055, 1298, 1528, 1534, 2592
PfoI	TCCNGGA	1 cut(s)	2538
PinAI	ACCGGT	1 cut(s)	569
PkrI	GCNGC	7 cut(s)	110, 163, 636, 1625, 2040, 2383, 2487
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	3 cut(s)	458, 983, 1672
PmaCI	CACGTG	1 cut(s)	2048
PmlI	CACGTG	1 cut(s)	2048
PpsI	GAGTC	3 cut(s)	458, 983, 1672
Ppu21I	YACGTR	1 cut(s)	2048
PshBI	ATTAAT	2 cut(s)	1811, 2606
PsiI	TTATAA	1 cut(s)	2619
Psp124BI	GAGCTC	1 cut(s)	1201
Psp6I	CCWGG	1 cut(s)	2538
PspCI	CACGTG	1 cut(s)	2048
PspFI	CCCAGC	1 cut(s)	1977
PspGI	CCWGG	1 cut(s)	2538
PspN4I	GGNNCC	8 cut(s)	244, 347, 564, 798, 1441, 1701, 2220, 2421
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	6 cut(s)	228, 345, 346, 728, 884, 1307
PstI	CTGCAG	3 cut(s)	293, 636, 2383
PstNI	CAGNNNCTG	3 cut(s)	1052, 1481, 2561
PsuI	RGATCY	6 cut(s)	996, 1699, 1870, 2197, 2218, 2535
PvuI	CGATCG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	2246
RsaI	GTAC	6 cut(s)	643, 930, 1441, 1449, 2630, 2636
RsaNI	GTAC	6 cut(s)	642, 929, 1440, 1448, 2629, 2635
RseI	CAYNNNNRTG	5 cut(s)	476, 942, 1509, 1845, 2112
SacI	GAGCTC	1 cut(s)	1201
SapI	GCTCTTC	2 cut(s)	120, 128
SaqAI	TTAA	8 cut(s)	489, 1485, 1637, 1805, 1811, 2360, 2507, 2606
SatI	GCNGC	7 cut(s)	109, 162, 635, 1624, 2039, 2382, 2486
Sau96I	GGNCC	6 cut(s)	228, 345, 346, 728, 884, 1307
ScaI	AGTACT	1 cut(s)	2636
SchI	GAGTC	3 cut(s)	459, 983, 1673
ScrFI	CCNGG	1 cut(s)	2540
SduI	GDGCHC	2 cut(s)	349, 1201
SfaNI	GCATC	8 cut(s)	148, 679, 1553, 1564, 2269, 2299, 2357, 2481
SfcI	CTRYAG	5 cut(s)	289, 632, 2379, 2449, 2515
Sfr274I	CTCGAG	1 cut(s)	611
SgrAI	CRCCGGYG	2 cut(s)	104, 569
SinI	GGWCC	2 cut(s)	728, 1307
SlaI	CTCGAG	1 cut(s)	611
SmiMI	CAYNNNNRTG	5 cut(s)	476, 942, 1509, 1845, 2112
SmlI	CTYRAG	4 cut(s)	611, 1451, 1671, 2359
SmoI	CTYRAG	4 cut(s)	611, 1451, 1671, 2359
SphI	GCATGC	1 cut(s)	1985
SsiI	CCGC	4 cut(s)	102, 108, 428, 2038
SspI	AATATT	1 cut(s)	1564
SspMI	CTAG	5 cut(s)	431, 807, 993, 1014, 2313
SstI	GAGCTC	1 cut(s)	1201
StyD4I	CCNGG	1 cut(s)	2538
StyI	CCWWGG	1 cut(s)	1614
TaaI	ACNGT	7 cut(s)	393, 646, 760, 839, 1439, 2557, 2576
TaiI	ACGT	3 cut(s)	273, 1387, 2050
TaqI	TCGA	8 cut(s)	355, 398, 612, 700, 1219, 2127, 2571, 2590
TatI	WGTACW	4 cut(s)	641, 1447, 2628, 2634
TauI	GCSGC	2 cut(s)	111, 2041
TfiI	GAWTC	7 cut(s)	98, 818, 1055, 1298, 1528, 1534, 2592
Tru1I	TTAA	8 cut(s)	489, 1485, 1637, 1805, 1811, 2360, 2507, 2606
Tru9I	TTAA	8 cut(s)	489, 1485, 1637, 1805, 1811, 2360, 2507, 2606
TscAI	CASTG	6 cut(s)	636, 765, 912, 1053, 2101, 2383
TseFI	GTSAC	5 cut(s)	172, 451, 496, 1370, 2477
TseI	GCWGC	5 cut(s)	161, 634, 1623, 2381, 2485
Tsp45I	GTSAC	5 cut(s)	172, 451, 496, 1370, 2477
TspDTI	ATGAA	8 cut(s)	313, 960, 1296, 1344, 1431, 1863, 2355, 2424
TspGWI	ACGGA	2 cut(s)	1559, 2465
TspRI	CASTG	6 cut(s)	636, 765, 912, 1053, 2101, 2383
Vha464I	CTTAAG	1 cut(s)	2359
VpaK11BI	GGWCC	2 cut(s)	728, 1307
VspI	ATTAAT	2 cut(s)	1811, 2606
XapI	RAATTY	4 cut(s)	249, 980, 1243, 2651
XceI	RCATGY	1 cut(s)	1985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1985
XhoI	CTCGAG	1 cut(s)	611
XmnI	GAANNNNTTC	3 cut(s)	1244, 2025, 2655
XspI	CTAG	5 cut(s)	431, 807, 993, 1014, 2313
ZrmI	AGTACT	1 cut(s)	2636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.