Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Forward (+)

6362222 .. 6363635

Gene Structure 1414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGATGATATCTCCGCGAGGCTCCAACAAGTTCTTGCTATCTCGCCTCGGAGTCCTAATCACGCAACAGAGACTCGTCCACGCATTGTCTGAGGGAGGATTGCAAGCTCAAGTTCACCCTAAAACCGTCCCGGACTCGGTACCGGACCAAGGTTTCATTGATATGTATAAGTGGAAAAAGATCGACGCGAGGGCCCTCGGGATAAAGCCCTCCATGATTTCGCATCCCTCTTGGATTGTGTTGAAACTTCTTCAGGCTGAAGGGTTTGAGGCCTACTTAGTGGGTGGATGTGTTAGAGACTTAATCCTCAAAAGGATACCTAAAGACTTCGATGTGATCACTACAGCTAATCTTAAAGAGATCAAGAAGAAATTTCATCATGCAGATGTTGTTGGGCAACGGTTTCCTATATGCAGGGTGCATGTTAAAGGCACTGTCATTGAGGTATCGAGTTTTGAAACAGTGGCAAGAGATGCAGGTAAAAAGAAAGAGAAAGAGAGAGATAATTTATCTTTTAGGCCGCCTGGCTGTGATAAGAAAGATTTCATCCGTTGGAAAAACAGCATGCATCGGGACTTCACTATTAACAGTTTATTCTTTGATCCTTTTATGAATAACATATTGATCGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

213

Amino Acids

24.14

Weight (kDa)

9.68

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	92 - 208	3.7e-18	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	2 cut(s)	19, 191
AciI	CCGC	2 cut(s)	17, 524
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	2 cut(s)	239, 282
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	139, 152
AgsI	TTSAA	2 cut(s)	247, 461
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	2 cut(s)	110, 350
AluI	AGCT	2 cut(s)	110, 350
Alw26I	GTCTC	2 cut(s)	67, 294
AlwI	GGATC	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	195, 273, 521
ApaI	GGGCCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	545
Asp718I	GGTACC	1 cut(s)	142
AspS9I	GGNCC	3 cut(s)	148, 195, 196
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	67, 294
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	134, 528
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	3 cut(s)	148, 195, 196
BmiI	GGNNCC	3 cut(s)	25, 144, 197
BmrFI	CCNGG	2 cut(s)	134, 528
BmsI	GCATC	3 cut(s)	235, 466, 580
BpuEI	CTTGAG	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	49, 151, 199
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 152
BseBI	CCWGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	3 cut(s)	49, 151, 199
BseGI	GGATG	3 cut(s)	226, 296, 549
BseLI	CCNNNNNNNGG	2 cut(s)	139, 152
BseMII	CTCAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	199
Bsh1236I	CGCG	2 cut(s)	19, 191
BshFI	GGCC	3 cut(s)	197, 275, 523
BshNI	GGYRCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	134, 146
BslFI	GGGAC	2 cut(s)	116, 590
BslI	CCNNNNNNNGG	2 cut(s)	139, 152
BsmAI	GTCTC	2 cut(s)	67, 294
BsmFI	GGGAC	2 cut(s)	116, 590
BsnI	GGCC	3 cut(s)	197, 275, 523
BsoBI	CYCGRG	1 cut(s)	200
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
BspACI	CCGC	2 cut(s)	17, 524
BspANI	GGCC	3 cut(s)	197, 275, 523
BspCNI	CTCAG	1 cut(s)	85
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	2 cut(s)	19, 191
BspLI	GGNNCC	3 cut(s)	25, 144, 197
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	49, 151, 199
BssMI	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	5 cut(s)	130, 405, 439, 466, 593
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	108, 569
BstDEI	CTNAG	2 cut(s)	93, 280
BstF5I	GGATG	3 cut(s)	226, 296, 549
BstFNI	CGCG	2 cut(s)	19, 191
BstKTI	GATC	6 cut(s)	186, 342, 366, 607, 630, 634
BstMAI	GTCTC	2 cut(s)	67, 294
BstMBI	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	428, 571
BstSCI	CCNGG	2 cut(s)	132, 526
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	2 cut(s)	19, 191
Bsu15I	ATCGAT	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	197, 275, 523
BsuTUI	ATCGAT	1 cut(s)	630
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	226, 296, 549
BtsIMutI	CAGTG	2 cut(s)	435, 471
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	108, 569
Cfr13I	GGNCC	3 cut(s)	148, 195, 196
ClaI	ATCGAT	1 cut(s)	630
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	4 cut(s)	217, 383, 425, 568
CviJI	RGCY	9 cut(s)	24, 110, 197, 211, 260, 275, 350, 523, 531
CviKI_1	RGCY	9 cut(s)	24, 110, 197, 211, 260, 275, 350, 523, 531
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	93, 280
DpnI	GATC	6 cut(s)	185, 341, 365, 606, 629, 633
DpnII	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	239, 282
Eco88I	CYCGRG	1 cut(s)	200
EcoO109I	RGGNCCY	2 cut(s)	195, 196
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	4 cut(s)	220, 386, 428, 571
FaqI	GGGAC	2 cut(s)	116, 590
FatI	CATG	4 cut(s)	216, 382, 424, 567
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	3 cut(s)	213, 303, 536
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	524
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	197, 275, 523
HapII	CCGG	2 cut(s)	134, 146
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	220, 386, 428, 571
HinfI	GANTC	3 cut(s)	54, 75, 137
HpaII	CCGG	2 cut(s)	134, 146
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	82, 118
Hpy188I	TCNGA	2 cut(s)	53, 94
Hpy188III	TCNNGA	3 cut(s)	202, 367, 575
Hpy8I	GTNNAC	2 cut(s)	82, 118
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	5 cut(s)	130, 405, 439, 466, 593
HpyCH4V	TGCA	6 cut(s)	106, 386, 417, 424, 479, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	2 cut(s)	93, 280
Hsp92II	CATG	4 cut(s)	220, 386, 428, 571
KpnI	GGTACC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	147, 159, 242, 403, 465, 513, 540
LweI	GCATC	3 cut(s)	235, 466, 580
MalI	GATC	6 cut(s)	185, 341, 365, 606, 629, 633
MboI	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
MboII	GAAGA	2 cut(s)	245, 382
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	2 cut(s)	374, 508
MlyI	GAGTC	3 cut(s)	63, 69, 131
MmeI	TCCRAC	2 cut(s)	51, 536
Mph1103I	ATGCAT	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	4 cut(s)	305, 357, 429, 588
MslI	CAYNNNNRTG	2 cut(s)	164, 387
MspI	CCGG	2 cut(s)	134, 146
MspR9I	CCNGG	2 cut(s)	134, 528
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	19, 191
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
NlaIII	CATG	4 cut(s)	220, 386, 428, 571
NlaIV	GGNNCC	3 cut(s)	25, 144, 197
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	2 cut(s)	428, 571
PaeI	GCATGC	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	545
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	3 cut(s)	62, 69, 131
PpsI	GAGTC	3 cut(s)	62, 69, 131
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	25, 144, 197
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	3 cut(s)	148, 195, 196
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	2 cut(s)	164, 387
SaqAI	TTAA	4 cut(s)	305, 357, 429, 588
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	6 cut(s)	183, 339, 363, 604, 627, 631
Sau96I	GGNCC	3 cut(s)	148, 195, 196
SchI	GAGTC	3 cut(s)	63, 69, 131
ScrFI	CCNGG	2 cut(s)	134, 528
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	6 cut(s)	112, 157, 325, 352, 450, 484
SfaNI	GCATC	3 cut(s)	235, 466, 580
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	164, 387
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	374, 508
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	17, 524
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	132, 526
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	5 cut(s)	130, 405, 439, 466, 593
TaqI	TCGA	4 cut(s)	186, 333, 452, 630
TasI	AATT	2 cut(s)	374, 508
TauI	GCSGC	1 cut(s)	526
Tru1I	TTAA	4 cut(s)	305, 357, 429, 588
Tru9I	TTAA	4 cut(s)	305, 357, 429, 588
TscAI	CASTG	2 cut(s)	442, 471
TspDTI	ATGAA	4 cut(s)	148, 368, 538, 629
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	442, 471
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	2 cut(s)	428, 571
XmnI	GAANNNNTTC	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.