Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Forward (+)

6364027 .. 6366868

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGCATAAGCTTTCTTCATCCATTTTGAGTTTGAGTAAGTTCAGAAAAATGATGGAGATGGACTATATGCTTTCTTATGGAGCTGCTGATGCGTCACTATGTTTGCTGTGGAGATTTGATCTGATCAGAATTCTGTTTCCCTTTCATGCCGCATACTTTGACCAACAGAGTGAAAACTTGAAAGGCGCTCAGAGTTCCTCAATGTTGATGAAACTATTCTCGAATATGGATAAAGTGGTTAGCTGTGATAGGCCTGGTCACTGCTCTTTATGGGTCGGACTGTTGGCATTTCACCTGGCACTAGTCAATAACCCACAAGATGCTCTTGTAGTATTGACTTTTGCTTCTGTTCTGTATCATGAAGAATGGGAAGAAGGGGTAAAATTTTCCAGAGACAATGCTGCATCGATAGTTAACTATGTACCTGAGATCTCAGGCTCATGTGGATTTAAATCAGAGGAACAACTTGCAAAACAAGTTTCCAAGTTAGCTTCTTTTATGCTAGATCATATTGCCGCTTTAACTGCAACAAAAGATCCTGATGAATCAATGTCCAGATATCTTGTTTTGCCATTCTCTGAGTTGGCATTTTTACCCAAGAATATGGCTAAACATGTTGCCGCAATTGTTGAAGTCCTGACCAATGACATCGAATATTACAATCAAGGAAGGAAGAATTTTGAGATTGATTACTACTCACTTGGGAAAGGTCACATGCGCGAGATTAGGTTTGTTTTAGGAAAAGTTATTCTAGAAACCATGGACAGTGGGATTTTGAGAGCGAAGGAAGCCGTTCAGGGGAAGGAGGACAACTACCACCTGCAGCAGGATATCATTGACAAAAATTTCACTAAGGGTAGAAAACGTGCAATTGATGCCCCTGAAATAAAACAAGAGTTGTCCAAGAAACATAGGGTGAAAGTAGTTTTTGATCCAGATATTGCTACCGATAATCAAGAGGTTGTTGAAACAACTCAATCACCACAGAAGGAGTTGATTTCAGTTCTGGGAAATATGTTAGAGAAGAAAAAACATCAGTTACCAGAAGAGGTGACTGAGAAAAAGCAAGAGCTTTCTGAGAATGATAAGTTCCAGACAAAGGAGAAGAAGAATACTAAGAAGTGTAATTCAAGTCAGGAGGAGACTATTAAGCTGGAAAATATGTTAGAGCAGAGAGGGTATCCTGTAAAACGGAAAGTGATCTGTGAGAAGATTACGGACCTTAGACAAGAAACAGACGAGGAGAGAGGCAGTCCACCTCCCCTCTCTTGTATTTTCAGCAGGGGTGTTGAGGAGATTCAGAAACGCAAACAAGTAGGAGAAAAGCCAATATCCAGTCTCCGTCGACTATCTAGTCTCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

456

Amino Acids

52.05

Weight (kDa)

7.6

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol_RNAbd	PF12627	1 - 51	1.1e-07	Probable RNA and SrmB- binding site of polymerase A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	828
AasI	GACNNNNNNGTC	1 cut(s)	1353
Acc36I	ACCTGC	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	1345
AccII	CGCG	1 cut(s)	720
AciI	CCGC	3 cut(s)	150, 516, 621
AclWI	GGATC	2 cut(s)	530, 926
AcsI	RAATTY	4 cut(s)	129, 383, 676, 844
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	798, 826, 1099
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	5 cut(s)	181, 632, 968, 1131, 1363
AhlI	ACTAGT	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	253, 294
AluBI	AGCT	6 cut(s)	10, 83, 243, 491, 1072, 1153
AluI	AGCT	6 cut(s)	10, 83, 243, 491, 1072, 1153
Alw26I	GTCTC	4 cut(s)	387, 1136, 1343, 1361
AlwI	GGATC	2 cut(s)	530, 926
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	3 cut(s)	83, 401, 823
ApoI	RAATTY	4 cut(s)	129, 383, 676, 844
Asp700I	GAANNNNTTC	2 cut(s)	215, 792
AspLEI	GCGC	2 cut(s)	188, 720
AspS9I	GGNCC	1 cut(s)	1219
AsuHPI	GGTGA	4 cut(s)	284, 928, 972, 1063
AvaII	GGWCC	1 cut(s)	1219
BbvI	GCAGC	3 cut(s)	70, 388, 835
BccI	CCATC	2 cut(s)	46, 52
BceAI	ACGGC	1 cut(s)	776
BciT130I	CCWGG	2 cut(s)	255, 296
BciVI	GTATCC	1 cut(s)	1191
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	4 cut(s)	387, 1136, 1343, 1361
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	4 cut(s)	302, 503, 752, 1353
BfmI	CTRYAG	1 cut(s)	821
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	828
BfuI	GTATCC	1 cut(s)	1191
BglII	AGATCT	1 cut(s)	429
BisI	GCNGC	6 cut(s)	84, 150, 402, 516, 621, 824
BlsI	GCNGC	6 cut(s)	85, 151, 403, 517, 622, 825
Bme1390I	CCNGG	2 cut(s)	255, 296
Bme18I	GGWCC	1 cut(s)	1219
BmgT120I	GGNCC	1 cut(s)	1219
BmrFI	CCNGG	2 cut(s)	255, 296
BmsI	GCATC	4 cut(s)	79, 310, 413, 865
Bsa29I	ATCGAT	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	3 cut(s)	798, 826, 1099
Bse1I	ACTGG	1 cut(s)	1335
Bse8I	GATNNNNATC	1 cut(s)	451
BseBI	CCWGG	2 cut(s)	255, 296
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	798, 826, 1099
BseMII	CTCAG	6 cut(s)	203, 417, 447, 570, 1047, 1068
BseNI	ACTGG	1 cut(s)	1335
BseRI	GAGGAG	3 cut(s)	1154, 1256, 1307
BseXI	GCAGC	3 cut(s)	70, 388, 835
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	1 cut(s)	253
BshVI	ATCGAT	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	798, 826, 1099
BsmAI	GTCTC	4 cut(s)	387, 1136, 1343, 1361
BsnI	GGCC	1 cut(s)	253
Bsp143I	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	3 cut(s)	150, 516, 621
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	6 cut(s)	202, 418, 446, 571, 1048, 1069
BspDI	ATCGAT	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	720
BspHI	TCATGA	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	825
BspMI	ACCTGC	1 cut(s)	828
BspPI	GGATC	2 cut(s)	530, 926
BsrI	ACTGG	1 cut(s)	1335
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	255, 296
Bst4CI	ACNGT	2 cut(s)	282, 767
Bst6I	CTCTTC	2 cut(s)	1041, 1364
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstDEI	CTNAG	9 cut(s)	189, 426, 433, 579, 852, 1056, 1077, 1116, 1223
BstDSI	CCRYGG	1 cut(s)	759
BstENI	CCTNNNNNAGG	1 cut(s)	824
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	720
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 720
BstKTI	GATC	7 cut(s)	121, 126, 432, 508, 538, 934, 1203
BstMAI	GTCTC	4 cut(s)	387, 1136, 1343, 1361
BstMBI	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 524, 788, 875
BstNI	CCWGG	2 cut(s)	255, 296
BstNSI	RCATGY	2 cut(s)	617, 718
BstSCI	CCNGG	2 cut(s)	253, 294
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	70, 388, 835
BstX2I	RGATCY	2 cut(s)	429, 535
BstXI	CCANNNNNNTGG	1 cut(s)	604
BstYI	RGATCY	2 cut(s)	429, 535
Bsu15I	ATCGAT	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	1191
BsuRI	GGCC	1 cut(s)	253
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	259, 772
BveI	ACCTGC	1 cut(s)	828
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	2 cut(s)	188, 720
Cfr13I	GGNCC	1 cut(s)	1219
ClaI	ATCGAT	1 cut(s)	407
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	6 cut(s)	146, 359, 441, 614, 715, 760
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	9 cut(s)	189, 426, 433, 579, 852, 1056, 1077, 1116, 1223
DpnI	GATC	7 cut(s)	120, 125, 431, 507, 537, 933, 1202
DpnII	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
DraI	TTTAAA	1 cut(s)	451
DrdI	GACNNNNNNGTC	1 cut(s)	1353
DseDI	GACNNNNNNGTC	1 cut(s)	1353
Eam1104I	CTCTTC	2 cut(s)	1041, 1364
EarI	CTCTTC	2 cut(s)	1041, 1364
Eco130I	CCWWGG	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	253
Eco32I	GATATC	2 cut(s)	560, 832
Eco47I	GGWCC	1 cut(s)	1219
EcoNI	CCTNNNNNAGG	1 cut(s)	824
EcoRI	GAATTC	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	253, 294
EcoRV	GATATC	2 cut(s)	560, 832
EcoT14I	CCWWGG	1 cut(s)	759
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	6 cut(s)	149, 362, 444, 617, 718, 763
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	6 cut(s)	145, 358, 440, 613, 714, 759
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	1345
Fnu4HI	GCNGC	6 cut(s)	84, 150, 402, 516, 621, 824
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	6 cut(s)	84, 150, 402, 516, 621, 824
FspBI	CTAG	4 cut(s)	302, 503, 752, 1353
GlaI	GCGC	2 cut(s)	187, 719
GluI	GCNGC	6 cut(s)	84, 150, 402, 516, 621, 824
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	188, 720
Hin1II	CATG	6 cut(s)	149, 362, 444, 617, 718, 763
Hin6I	GCGC	2 cut(s)	186, 718
HinP1I	GCGC	2 cut(s)	186, 718
HincII	GTYRAC	2 cut(s)	415, 1346
HindII	GTYRAC	2 cut(s)	415, 1346
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	545, 1297
HpaI	GTTAAC	1 cut(s)	415
HphI	GGTGA	4 cut(s)	284, 928, 972, 1063
Hpy166II	GTNNAC	3 cut(s)	415, 1256, 1346
Hpy188I	TCNGA	9 cut(s)	44, 123, 128, 192, 278, 457, 580, 1078, 1302
Hpy8I	GTNNAC	3 cut(s)	415, 1256, 1346
Hpy99I	CGWCG	1 cut(s)	1347
HpyAV	CCTTC	5 cut(s)	368, 663, 778, 796, 982
HpyCH4III	ACNGT	2 cut(s)	282, 767
HpyCH4IV	ACGT	1 cut(s)	865
HpyCH4V	TGCA	6 cut(s)	4, 404, 470, 527, 823, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 524, 788, 875
HpyF3I	CTNAG	9 cut(s)	189, 426, 433, 579, 852, 1056, 1077, 1116, 1223
HpySE526I	ACGT	1 cut(s)	865
Hsp92II	CATG	6 cut(s)	149, 362, 444, 617, 718, 763
HspAI	GCGC	2 cut(s)	186, 718
Ksp22I	TGATCA	1 cut(s)	123
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	3 cut(s)	70, 388, 835
LweI	GCATC	4 cut(s)	79, 310, 413, 865
MaeI	CTAG	4 cut(s)	302, 503, 752, 1353
MaeII	ACGT	1 cut(s)	865
MaeIII	GTNAC	5 cut(s)	93, 257, 710, 1038, 1051
MalI	GATC	7 cut(s)	120, 125, 431, 507, 537, 933, 1202
MboI	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
MfeI	CAATTG	2 cut(s)	624, 870
MflI	RGATCY	2 cut(s)	429, 535
MluCI	AATT	7 cut(s)	129, 383, 624, 676, 844, 870, 1126
MmeI	TCCRAC	1 cut(s)	256
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	215, 792
MseI	TTAA	4 cut(s)	414, 450, 521, 1149
MspR9I	CCNGG	2 cut(s)	255, 296
MunI	CAATTG	2 cut(s)	624, 870
MvaI	CCWGG	2 cut(s)	255, 296
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	4 cut(s)	89, 524, 788, 875
NcoI	CCATGG	1 cut(s)	759
NdeII	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
NlaIII	CATG	6 cut(s)	149, 362, 444, 617, 718, 763
NmuCI	GTSAC	4 cut(s)	93, 257, 710, 1051
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	617, 718
PagI	TCATGA	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	828
PceI	AGGCCT	1 cut(s)	253
PciI	ACATGT	1 cut(s)	613
PdmI	GAANNNNTTC	2 cut(s)	215, 792
PfeI	GAWTC	2 cut(s)	545, 1297
PkrI	GCNGC	6 cut(s)	85, 151, 403, 517, 622, 825
PscI	ACATGT	1 cut(s)	613
Psp6I	CCWGG	2 cut(s)	253, 294
PspGI	CCWGG	2 cut(s)	253, 294
PspPI	GGNCC	1 cut(s)	1219
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	429, 535
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	1344
SaqAI	TTAA	4 cut(s)	414, 450, 521, 1149
SatI	GCNGC	6 cut(s)	84, 150, 402, 516, 621, 824
Sau3AI	GATC	7 cut(s)	118, 123, 429, 505, 535, 931, 1200
Sau96I	GGNCC	1 cut(s)	1219
ScrFI	CCNGG	2 cut(s)	255, 296
SfaNI	GCATC	4 cut(s)	79, 310, 413, 865
SfcI	CTRYAG	1 cut(s)	821
SinI	GGWCC	1 cut(s)	1219
SmiI	ATTTAAAT	1 cut(s)	451
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	7 cut(s)	129, 383, 624, 676, 844, 870, 1126
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	3 cut(s)	150, 516, 621
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	4 cut(s)	302, 503, 752, 1353
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	2 cut(s)	253, 294
StyI	CCWWGG	1 cut(s)	759
SwaI	ATTTAAAT	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	282, 767
TaiI	ACGT	1 cut(s)	868
TaqI	TCGA	4 cut(s)	221, 407, 651, 1345
TasI	AATT	7 cut(s)	129, 383, 624, 676, 844, 870, 1126
TauI	GCSGC	3 cut(s)	152, 518, 623
TfiI	GAWTC	2 cut(s)	545, 1297
Tru1I	TTAA	4 cut(s)	414, 450, 521, 1149
Tru9I	TTAA	4 cut(s)	414, 450, 521, 1149
TscAI	CASTG	2 cut(s)	266, 772
TseFI	GTSAC	4 cut(s)	93, 257, 710, 1051
TseI	GCWGC	3 cut(s)	83, 401, 823
Tsp45I	GTSAC	4 cut(s)	93, 257, 710, 1051
TspDTI	ATGAA	5 cut(s)	6, 134, 224, 375, 558
TspGWI	ACGGA	3 cut(s)	1207, 1232, 1331
TspRI	CASTG	2 cut(s)	266, 772
VpaK11BI	GGWCC	1 cut(s)	1219
XagI	CCTNNNNNAGG	1 cut(s)	824
XapI	RAATTY	4 cut(s)	129, 383, 676, 844
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	2 cut(s)	617, 718
XmiI	GTMKAC	1 cut(s)	1345
XmnI	GAANNNNTTC	2 cut(s)	215, 792
XspI	CTAG	4 cut(s)	302, 503, 752, 1353
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.