Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002358

Physical Location & Seq

Genomic Coordinates Forward (+)

14398362 .. 14413195

Gene Structure 14834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3462 bp

ATGACAGATGTAAAATTGTTGCCTGCCGTGTCGAAACTAAACGGGTCCGTCTTCGGGTCTTTATACAGAAGGAAAGAAAAAAAATCTCACATTTGTGCTCTCTGCTCTCTCTCTCTCTCTCTTGCTCGCCATTGTAGACTCCTTCACAAGGCACCCAGAAATTCCATTTCCAAAGCCACTAAACGAATTGGGACCGTGAAGCAGCGTTGGACTGCAATCGGAGATCGAATCGGCGGCAGCGGCTTACGGCAACCTGGGTCGCGAACCGCCGCGGTTCGGGGTCGGAAGTCTGTAGTAATTTTCGAAGCGATGGAGGGTTTAAGGCAACTGGAGGCGTTGTGTGAGAGGCTGTACAATTCACAGGACTCAGTCGAAAGGGCTCACGCCGAAAACACTCTCAAATGCTTTTCGGTGAACATCGAATACATTTCGCAGTGCCAGTACATTCTCGACAATGCCATGACTCCCTACGCGTTGATGCTGGCTAGTTCTAGCTTGTTGAAGCAAGTCACTGAGCAAAAACTTGCTCTGCAGCTTCGTCTCGACATCTGGAATTACCTTATTAACTATTTGGCCACTCGAGGACGAGAGTTGCAGCCGTTTGTGACTGCCTCTTTAATCCAACTCTTATGTCGACTCACCAAGTTTGGGTGGTTTGATGATGATCGATTCCGGGATGTGGTGAAAGAGTCAATGAACTTCTTGAATCAGGCAACATCTGATCACTATGCCATTGGTTTGAAGATATTGAACCAGCTCGTGTCTGAGATGAGTCAGCCTAATCCTGGGTTGCCTTCAACACATCATCGGAGGGTTGCGTGCTCCTTCAGGGACCAGTCTCTCTTTCAAATATTCCAAATATCTTTGACTTCATTGCATCAATTGGAAAGTAATGTTGCAAGTCGATTGCAAGAGTTGGCTCTTTCGCTTTCACTTAAATGCCTATCTTTTGATTTTGTTGGGACCTCAATTGATGAAAGTTCTGAAGAATTTGGTACTGTTCAGATTCCATCGGGTTGGAAGTCGACATTGGAGGATCCAGCTACACTTCAAGTCTTCTTTGATTACTATGCCAATACAAAGCCCCCTCTTTCAAAGGAGGCACTGGAGTGCTTGGTGCGACTGGCTTCTGTTAGACGTTCTTTGTTTACTAGTGATCCTGGCCGTTCAAACTATCTGTCCCATTTAATCACAGGAACCAAAGAAATCCTACAAACTGGGCAAGGTCTTGCTGATCATGATAATTACCATGAATATTGTCGTCTTCTTGGACGATTCCGAATGAATTATCAGTTGTCAGAGCTTGTGACTGTGGAAGGCTATAGTGACTGGATACGTTTAGTAGCAGAATTCACTTTAAAGTCTTTGCATTCTTGGAAGTGGGCCAGCAGCAGCGTATACTACCTTTTAGGACTATGGTCTAGATTGGTGACATCTGTACCATACTTGAAAGGTGATGCACCCAGCATGCTCGATGAATTTGTTCCTAAGATTACTGAAGGTTTCATCACATCAAGATTTAACTCCGTGCAGGATGGATTGCTTGATGATCTTTCTGAGAACCCTTTAGACAATGTTGAACTTCTTCAAGATCAGTTGGATTGTTTTACACAAGTCTGTAGATTCCAGTATGAAAGCAGTAGTTTGTATATAATAAACATAGTGGAGCCTCTTTTGCAAGTCTACACGGAAAGAGCTCGAGTTCAGACCAGTGATAACAGTGACCTCTCTGTTATTGAAGCAAAACTTGCTTGGATTGTTCATATAGTTGCTGCAGTTCTCAAGATAAAGCAAAGTACTGGGTGCAGTGCCGAGTCACAAGAAGTACTTGATGCAGAACTTTCAGCTCGCATCTTGCAGTTAATAAATGTCACTGACAGTGGGCTACACAGCCAGAGGTATGGTGAAACAAGCAAGCAAAGACTTGATCGTGCAATTCTTACCTTTTTTCAACATTTTCGGAAGTCTTATGTGGGTGACCAGGCCATGCATTCTTCGAGGATGCTCGCCTTTCTGAGCTTCTTGGACTTCATGATCGATCTTTTGATGTTAAATGTCATTGTTGGCAAGATTGCTACAAACCTGAAATGTTATACGGAGAATGAGGAGGTCATTGGTCACACCCTGAGTTTGTTCTTGGAGCTGGCGTCTGGATACATGAGTGGCAAGCTACTCTTGAAGTTGGATACTGTCAAATTTATACTTGCCAATCATACTAGGGAGCATTTCCCTTTTCTGGAAGAGTATAGGTGTTCTCGCAGCAGAACAACTTTCTATTACATAATTGGCTGGTTAATATTCATGGAAGACAGCCCTGTCAAATTTAAATCTTCCATGGATCCACTTTTGCAAGTTTTCGTCAATCTGGAATCAACTCCTGATTCAATGTTTCGTACTGATGCTGTAAAGTATGGACTAATTGGGTTGATGAGAGACCTTAGAGGAATTGCCATGGCCACAAATAGTCGCAGAACTTATGGCTTTCTGTTTGATTGGTTGTATCCTGCACACATGCCACTTCTTTTGAAAGGAATCTTGCACTGGTCCGATACACCAGAGGTGACCACCCCTTTGTTGAAATTCATGGCTGAGTTTGCATTCAACAAAGCCCAACGCTTGACTTTTGATTCATCTTCTCCTAATGGAATACTTCTTTTTCGAGAAGTCAGTAAATTGATTGTTGCGTATGGGTCAAGGATTTTGTCTCTTCCAAATGTTGCAGATATATATGGCTACAAATACAAGGGAATTTGGATTTCTTTAACTATTCTTACAAGAGCTCTTGCTGGAAACTATGTCAACTTTGGGGTGTTTGAGCTATATGGTGATAGAGCGCTTGCTGATGCACTTGATATTGCACTGAAGATGACATTATCAATTCCTTTGGCTGATGTATTGGCATTCCGCAAGCTGACAAAGGCCTATTTTGCATTCTTGGAGGTTTTATTCAACAGCCATATAGTGTATATACTGAATCTGGATACCAGTACTTTTATGCACATAGTTGGGTCCCTTGAGTCTGGGATTAAAGGTTTCGATACAGGAATCGCATCGCAGTGTGCATCAGCTGTTGAAACTTTGGCTGCTTTCTACTTCAACAACATAACCATGGGTGAGGCACCCACATCACCTACTGCAGTCAATCTTGCTCGTCACATTTCAGACTGCCCCAACTTGTTTCCAGAAGTACTGAAGACGCTGTTTGAGATTGTTTTATTCGAGGAAAGTAACAACCAGTGGAATTTTAGCAGGCCAATGCTGAGCTTGATACTTATTAATGAGCAGATATTCTCCGATTTGAAAGCTCATATCTTGGCTTCACAGCAAGCGGATCAACATCAACGGCTTTCCCAGTGTTTTGACAAGCTTATGGTGGATGTTACTAGAAGCTTGGATACAAAGAACAGGGACAAGTTTGCCCAAAACTTGACGGTATTCAGGCGTGATTTCCGGTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0019899 GO:0031267 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051020 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N

Protein Analysis

1154

Amino Acids

130.84

Weight (kDa)

7.95

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_XPO7	PF25795	514 - 753	5.1e-88	Exportin-7-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120
fragaria_vesca	FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530
malus_domestica	MD02G1207800.v1.1 MD07G1118000.v1.1
prunus_persica	Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G051400_v2.0.a1
pyrus_communis	pycom02g17010 pycom07g10620
rosa_chinensis	RchiOBHm_Chr1g0329811
rosa_laevigata	RLG00000029862
rosa_multiflora	Rmu_co8519431.1_g000001 Rmu_sc0003459.1_g000016
rosa_roxburghii	Rroxscaffold_4G00320670
rosa_rugosa	Rorug01G0083100 Rorug01G0083200 Rorug01G0083300 Rorug01G0083400
rosa_samantha	Rh1AG101400 Rh1BG080600 Rh1CG097100 Rh1DG104700
rosa_wichuraiana	Rw1G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2315
AccB1I	GGYRCC	2 cut(s)	151, 3118
AccI	GTMKAC	5 cut(s)	136, 634, 1025, 1398, 1683
AccII	CGCG	3 cut(s)	262, 272, 473
AciI	CCGC	7 cut(s)	234, 240, 267, 270, 272, 2905, 3329
AclWI	GGATC	6 cut(s)	1031, 1044, 1151, 2333, 2346, 3339
AcoI	YGGCCR	3 cut(s)	573, 1162, 2454
AcsI	RAATTY	9 cut(s)	160, 989, 1349, 1478, 2195, 2321, 2579, 2748, 3241
AcuI	CTGAAG	5 cut(s)	811, 1005, 1518, 2882, 3212
AcyI	GRCGYC	1 cut(s)	2147
AfaI	GTAC	9 cut(s)	353, 443, 997, 1440, 1798, 1827, 2395, 2989, 3189
AfeI	AGCGCT	1 cut(s)	2835
AfiI	CCNNNNNNNGG	7 cut(s)	54, 148, 276, 648, 679, 785, 2236
AflIII	ACRYGT	1 cut(s)	471
AhlI	ACTAGT	1 cut(s)	1151
AjnI	CCWGG	4 cut(s)	253, 784, 1159, 1980
AjuI	GAANNNNNNNTTGG	2 cut(s)	1013, 1045
AleI	CACNNNNGTG	2 cut(s)	93, 1108
Alw21I	GWGCWC	4 cut(s)	100, 824, 1699, 2782
Alw26I	GTCTC	4 cut(s)	545, 843, 2427, 2709
AlwI	GGATC	6 cut(s)	1031, 1044, 1151, 2333, 2346, 3339
Ama87I	CYCGRG	2 cut(s)	579, 1698
Aor51HI	AGCGCT	1 cut(s)	2835
AoxI	GGCC	7 cut(s)	573, 1162, 1383, 1983, 2454, 2919, 3251
ApeKI	GCWGC	9 cut(s)	202, 237, 532, 595, 1389, 1392, 1772, 2259, 3083
ApoI	RAATTY	9 cut(s)	160, 989, 1349, 1478, 2195, 2321, 2579, 2748, 3241
ArsI	GACNNNNNNTTYG	4 cut(s)	1163, 1195, 2554, 2586
AseI	ATTAAT	1 cut(s)	3276
Asp700I	GAANNNNTTC	2 cut(s)	1482, 1584
AspLEI	GCGC	1 cut(s)	2836
AspS9I	GGNCC	7 cut(s)	45, 192, 832, 963, 1383, 2544, 3009
AsuC2I	CCSGG	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	303
AvaI	CYCGRG	2 cut(s)	579, 1698
AvaII	GGWCC	6 cut(s)	45, 192, 832, 963, 2544, 3009
BaeI	ACNNNNGTAYC	4 cut(s)	1422, 1455, 2146, 2179
BalI	TGGCCA	2 cut(s)	575, 2456
BamHI	GGATCC	2 cut(s)	1036, 2338
BanI	GGYRCC	2 cut(s)	151, 3118
BanII	GRGCYC	3 cut(s)	382, 1699, 2782
BarI	GAAGNNNNNNTAC	2 cut(s)	3379, 3411
BauI	CACGAG	1 cut(s)	758
BbsI	GAAGAC	5 cut(s)	43, 1048, 1256, 2313, 3200
Bbv12I	GWGCWC	4 cut(s)	100, 824, 1699, 2782
BbvI	GCAGC	9 cut(s)	214, 249, 544, 607, 1401, 1404, 1759, 2271, 3070
BccI	CCATC	3 cut(s)	304, 1018, 1529
BceAI	ACGGC	5 cut(s)	11, 263, 583, 1149, 3359
BciT130I	CCWGG	4 cut(s)	255, 786, 1161, 1982
BciVI	GTATCC	6 cut(s)	1326, 2147, 2179, 2511, 2974, 3388
BclI	TGATCA	2 cut(s)	721, 1234
BcnI	CCSGG	1 cut(s)	674
BcoDI	GTCTC	4 cut(s)	545, 843, 2427, 2709
BcuI	ACTAGT	1 cut(s)	1151
BfaI	CTAG	6 cut(s)	486, 492, 1152, 1422, 2217, 3384
BfmI	CTRYAG	6 cut(s)	291, 530, 1321, 1618, 1773, 3135
BfoI	RGCGCY	1 cut(s)	2837
BfuI	GTATCC	6 cut(s)	1326, 2147, 2179, 2511, 2974, 3388
BlpI	GCTNAGC	1 cut(s)	3260
BmcAI	AGTACT	4 cut(s)	1798, 1827, 2989, 3189
Bme1390I	CCNGG	5 cut(s)	255, 674, 786, 1161, 1982
Bme18I	GGWCC	6 cut(s)	45, 192, 832, 963, 2544, 3009
BmeT110I	CYCGRG	2 cut(s)	579, 1698
BmgT120I	GGNCC	7 cut(s)	45, 192, 832, 963, 1383, 2544, 3009
BmrFI	CCNGG	5 cut(s)	255, 674, 786, 1161, 1982
BmrI	ACTGGG	3 cut(s)	1227, 1809, 3346
BmuI	ACTGGG	3 cut(s)	1227, 1809, 3346
BoxI	GACNNNNGTC	1 cut(s)	1417
BpiI	GAAGAC	5 cut(s)	43, 1048, 1256, 2313, 3200
BpmI	CTGGAG	2 cut(s)	350, 1127
Bpu1102I	GCTNAGC	1 cut(s)	3260
Bpu14I	TTCGAA	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	1766, 3035
BpuMI	CCSGG	1 cut(s)	674
Bsa29I	ATCGAT	2 cut(s)	667, 2037
BsaBI	GATNNNNATC	2 cut(s)	663, 3336
BsaHI	GRCGYC	1 cut(s)	2147
BsaI	GGTCTC	1 cut(s)	2427
BsaJI	CCNNGG	6 cut(s)	254, 270, 785, 2334, 2451, 3108
BsaWI	WCCGGW	1 cut(s)	3450
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 2132, 2162
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 148, 276, 648, 679, 785, 2236
Bse3DI	GCAATG	1 cut(s)	872
Bse8I	GATNNNNATC	2 cut(s)	663, 3336
BseBI	CCWGG	4 cut(s)	255, 786, 1161, 1982
BseCI	ATCGAT	2 cut(s)	667, 2037
BseDI	CCNNGG	6 cut(s)	254, 270, 785, 2334, 2451, 3108
BseGI	GGATG	4 cut(s)	682, 1540, 2007, 3382
BseJI	GATNNNNATC	2 cut(s)	663, 3336
BseLI	CCNNNNNNNGG	7 cut(s)	54, 148, 276, 648, 679, 785, 2236
BseMI	GCAATG	1 cut(s)	872
BseMII	CTCAG	8 cut(s)	381, 504, 756, 1548, 2006, 2117, 2580, 3251
BseRI	GAGGAG	1 cut(s)	2120
BseXI	GCAGC	9 cut(s)	214, 249, 544, 607, 1401, 1404, 1759, 2271, 3070
BseYI	CCCAGC	1 cut(s)	1463
BsgI	GTGCAG	3 cut(s)	1550, 1825, 2490
Bsh1236I	CGCG	3 cut(s)	262, 272, 473
BshFI	GGCC	7 cut(s)	575, 1164, 1385, 1985, 2456, 2921, 3253
BshNI	GGYRCC	2 cut(s)	151, 3118
BshVI	ATCGAT	2 cut(s)	667, 2037
BsiHKAI	GWGCWC	4 cut(s)	100, 824, 1699, 2782
BsiHKCI	CYCGRG	2 cut(s)	579, 1698
BsiSI	CCGG	2 cut(s)	673, 3451
BslFI	GGGAC	6 cut(s)	205, 845, 976, 1165, 2995, 3422
BslI	CCNNNNNNNGG	7 cut(s)	54, 148, 276, 648, 679, 785, 2236
BsmAI	GTCTC	4 cut(s)	545, 843, 2427, 2709
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	6 cut(s)	205, 845, 976, 1165, 2995, 3422
BsmI	GAATGC	5 cut(s)	1369, 1990, 2597, 2900, 2930
BsnI	GGCC	7 cut(s)	575, 1164, 1385, 1985, 2456, 2921, 3253
Bso31I	GGTCTC	1 cut(s)	2427
BsoBI	CYCGRG	2 cut(s)	579, 1698
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	5 cut(s)	100, 382, 824, 1699, 2782
Bsp1407I	TGTACA	1 cut(s)	351
Bsp1720I	GCTNAGC	1 cut(s)	3260
Bsp19I	CCATGG	3 cut(s)	2334, 2451, 3108
Bsp68I	TCGCGA	1 cut(s)	262
BspACI	CCGC	7 cut(s)	234, 240, 267, 270, 272, 2905, 3329
BspANI	GGCC	7 cut(s)	575, 1164, 1385, 1985, 2456, 2921, 3253
BspCNI	CTCAG	8 cut(s)	380, 505, 757, 1549, 2007, 2118, 2581, 3252
BspDI	ATCGAT	2 cut(s)	667, 2037
BspFNI	CGCG	3 cut(s)	262, 272, 473
BspHI	TCATGA	2 cut(s)	1237, 2031
BspMAI	CTGCAG	3 cut(s)	534, 1777, 3139
BspPI	GGATC	6 cut(s)	1031, 1044, 1151, 2333, 2346, 3339
BspT104I	TTCGAA	1 cut(s)	303
BspT107I	GGYRCC	2 cut(s)	151, 3118
BspTNI	GGTCTC	1 cut(s)	2427
BsrDI	GCAATG	1 cut(s)	872
BsrGI	TGTACA	1 cut(s)	351
BssECI	CCNNGG	6 cut(s)	254, 270, 785, 2334, 2451, 3108
BssNAI	GTATAC	1 cut(s)	1399
BssNI	GRCGYC	1 cut(s)	2147
BssSI	CACGAG	1 cut(s)	758
BssT1I	CCWWGG	3 cut(s)	2334, 2451, 3108
Bst1107I	GTATAC	1 cut(s)	1399
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	4 cut(s)	255, 786, 1161, 1982
Bst4CI	ACNGT	7 cut(s)	196, 1000, 1312, 1721, 1880, 2191, 3433
Bst6I	CTCTTC	2 cut(s)	2235, 2712
BstACI	GRCGYC	1 cut(s)	2147
BstAPI	GCANNNNNTGC	1 cut(s)	1748
BstAUI	TGTACA	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	303
BstDSI	CCRYGG	4 cut(s)	270, 2334, 2451, 3108
BstEII	GGTNACC	2 cut(s)	1976, 2560
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	4 cut(s)	682, 1540, 2007, 3382
BstFNI	CGCG	3 cut(s)	262, 272, 473
BstH2I	RGCGCY	1 cut(s)	2837
BstHHI	GCGC	1 cut(s)	2836
BstMAI	GTCTC	4 cut(s)	545, 843, 2427, 2709
BstMWI	GCNNNNNNNGC	5 cut(s)	240, 1675, 1748, 2594, 2927
BstNI	CCWGG	4 cut(s)	255, 786, 1161, 1982
BstNSI	RCATGY	2 cut(s)	1471, 2515
BstPAI	GACNNNNGTC	1 cut(s)	1417
BstPI	GGTNACC	2 cut(s)	1976, 2560
BstSCI	CCNGG	5 cut(s)	253, 672, 784, 1159, 1980
BstSFI	CTRYAG	6 cut(s)	291, 530, 1321, 1618, 1773, 3135
BstUI	CGCG	3 cut(s)	262, 272, 473
BstV1I	GCAGC	9 cut(s)	214, 249, 544, 607, 1401, 1404, 1759, 2271, 3070
BstV2I	GAAGAC	5 cut(s)	43, 1048, 1256, 2313, 3200
BstX2I	RGATCY	2 cut(s)	1036, 2338
BstXI	CCANNNNNNTGG	2 cut(s)	1017, 1901
BstYI	RGATCY	2 cut(s)	1036, 2338
BstZ17I	GTATAC	1 cut(s)	1399
Bsu15I	ATCGAT	2 cut(s)	667, 2037
BsuI	GTATCC	6 cut(s)	1326, 2147, 2179, 2511, 2974, 3388
BsuRI	GGCC	7 cut(s)	575, 1164, 1385, 1985, 2456, 2921, 3253
BsuTUI	ATCGAT	2 cut(s)	667, 2037
BtgI	CCRYGG	4 cut(s)	270, 2334, 2451, 3108
BtgZI	GCGATG	2 cut(s)	323, 3036
BtsCI	GGATG	4 cut(s)	682, 1540, 2007, 3382
BtsI	GCAGTG	3 cut(s)	440, 1813, 3062
BtuMI	TCGCGA	1 cut(s)	262
CciI	TCATGA	2 cut(s)	1237, 2031
CfoI	GCGC	1 cut(s)	2836
Cfr13I	GGNCC	7 cut(s)	45, 192, 832, 963, 1383, 2544, 3009
Cfr42I	CCGCGG	1 cut(s)	273
ClaI	ATCGAT	2 cut(s)	667, 2037
CseI	GACGC	2 cut(s)	2136, 3205
Csp6I	GTAC	9 cut(s)	352, 442, 996, 1439, 1797, 1826, 2394, 2988, 3188
CspCI	CAANNNNNGTGG	2 cut(s)	2505, 2540
CviQI	GTAC	9 cut(s)	352, 442, 996, 1439, 1797, 1826, 2394, 2988, 3188
DraI	TTTAAA	2 cut(s)	1359, 2326
DrdI	GACNNNNNNGTC	1 cut(s)	2315
DseDI	GACNNNNNNGTC	1 cut(s)	2315
EaeI	YGGCCR	3 cut(s)	573, 1162, 2454
Eam1104I	CTCTTC	2 cut(s)	2235, 2712
EarI	CTCTTC	2 cut(s)	2235, 2712
Ecl136II	GAGCTC	2 cut(s)	1697, 2780
Eco130I	CCWWGG	3 cut(s)	2334, 2451, 3108
Eco147I	AGGCCT	1 cut(s)	2921
Eco24I	GRGCYC	3 cut(s)	382, 1699, 2782
Eco31I	GGTCTC	1 cut(s)	2427
Eco47I	GGWCC	6 cut(s)	45, 192, 832, 963, 2544, 3009
Eco47III	AGCGCT	1 cut(s)	2835
Eco53kI	GAGCTC	2 cut(s)	1697, 2780
Eco57I	CTGAAG	5 cut(s)	811, 1005, 1518, 2882, 3212
Eco88I	CYCGRG	2 cut(s)	579, 1698
Eco91I	GGTNACC	2 cut(s)	1976, 2560
EcoICRI	GAGCTC	2 cut(s)	1697, 2780
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	2 cut(s)	963, 3009
EcoO65I	GGTNACC	2 cut(s)	1976, 2560
EcoRI	GAATTC	1 cut(s)	1349
EcoRII	CCWGG	4 cut(s)	253, 784, 1159, 1980
EcoT14I	CCWWGG	3 cut(s)	2334, 2451, 3108
EcoT22I	ATGCAT	1 cut(s)	1992
EcoT38I	GRGCYC	3 cut(s)	382, 1699, 2782
ErhI	CCWWGG	3 cut(s)	2334, 2451, 3108
Esp3I	CGTCTC	1 cut(s)	545
FalI	AAGNNNNNCTT	6 cut(s)	1731, 1763, 1812, 1844, 2159, 2191
FaqI	GGGAC	6 cut(s)	205, 845, 976, 1165, 2995, 3422
FbaI	TGATCA	2 cut(s)	721, 1234
FblI	GTMKAC	5 cut(s)	136, 634, 1025, 1398, 1683
FokI	GGATG	4 cut(s)	689, 1547, 2014, 3389
FriOI	GRGCYC	3 cut(s)	382, 1699, 2782
FspBI	CTAG	6 cut(s)	486, 492, 1152, 1422, 2217, 3384
GlaI	GCGC	1 cut(s)	2835
GsaI	CCCAGC	1 cut(s)	1467
GsuI	CTGGAG	2 cut(s)	350, 1127
HaeII	RGCGCY	1 cut(s)	2837
HaeIII	GGCC	7 cut(s)	575, 1164, 1385, 1985, 2456, 2921, 3253
HapII	CCGG	2 cut(s)	673, 3451
HgaI	GACGC	2 cut(s)	2136, 3205
HhaI	GCGC	1 cut(s)	2836
Hin1I	GRCGYC	1 cut(s)	2147
Hin6I	GCGC	1 cut(s)	2834
HinP1I	GCGC	1 cut(s)	2834
HincII	GTYRAC	3 cut(s)	635, 1026, 2800
HindII	GTYRAC	3 cut(s)	635, 1026, 2800
HindIII	AAGCTT	2 cut(s)	3365, 3388
HpaII	CCGG	2 cut(s)	673, 3451
Hpy166II	GTNNAC	8 cut(s)	137, 415, 635, 1026, 1149, 1399, 1684, 2800
Hpy8I	GTNNAC	8 cut(s)	137, 415, 635, 1026, 1149, 1399, 1684, 2800
HpyAV	CCTTC	6 cut(s)	63, 152, 804, 835, 1310, 1493
HpyCH4III	ACNGT	7 cut(s)	196, 1000, 1312, 1721, 1880, 2191, 3433
HpyCH4IV	ACGT	2 cut(s)	1138, 1336
HpyF10VI	GCNNNNNNNGC	5 cut(s)	240, 1675, 1748, 2594, 2927
HpySE526I	ACGT	2 cut(s)	1138, 1336
Hsp92I	GRCGYC	1 cut(s)	2147
HspAI	GCGC	1 cut(s)	2834
KflI	GGGWCCC	1 cut(s)	3009
Ksp22I	TGATCA	2 cut(s)	721, 1234
KspI	CCGCGG	1 cut(s)	273
LmnI	GCTCC	4 cut(s)	827, 1666, 2140, 2221
Lsp1109I	GCAGC	9 cut(s)	214, 249, 544, 607, 1401, 1404, 1759, 2271, 3070
MaeI	CTAG	6 cut(s)	486, 492, 1152, 1422, 2217, 3384
MaeII	ACGT	2 cut(s)	1138, 1336
MfeI	CAATTG	2 cut(s)	881, 969
MflI	RGATCY	2 cut(s)	1036, 2338
MhlI	GDGCHC	5 cut(s)	100, 382, 824, 1699, 2782
MlsI	TGGCCA	2 cut(s)	575, 2456
MluI	ACGCGT	1 cut(s)	471
MluNI	TGGCCA	2 cut(s)	575, 2456
MlyI	GAGTC	8 cut(s)	132, 359, 457, 630, 698, 781, 1823, 3026
MmeI	TCCRAC	6 cut(s)	188, 263, 646, 998, 1578, 2163
Mox20I	TGGCCA	2 cut(s)	575, 2456
Mph1103I	ATGCAT	1 cut(s)	1992
MroXI	GAANNNNTTC	2 cut(s)	1482, 1584
MscI	TGGCCA	2 cut(s)	575, 2456
MslI	CAYNNNNRTG	5 cut(s)	93, 937, 1108, 3055, 3107
Msp20I	TGGCCA	2 cut(s)	575, 2456
MspA1I	CMGCKG	3 cut(s)	240, 272, 3068
MspI	CCGG	2 cut(s)	673, 3451
MspR9I	CCNGG	5 cut(s)	255, 674, 786, 1161, 1982
MunI	CAATTG	2 cut(s)	881, 969
Mva1269I	GAATGC	5 cut(s)	1369, 1990, 2597, 2900, 2930
MvaI	CCWGG	4 cut(s)	255, 786, 1161, 1982
MvnI	CGCG	3 cut(s)	262, 272, 473
MwoI	GCNNNNNNNGC	5 cut(s)	240, 1675, 1748, 2594, 2927
NciI	CCSGG	1 cut(s)	674
NcoI	CCATGG	3 cut(s)	2334, 2451, 3108
NmeAIII	GCCGAG	1 cut(s)	1837
NruI	TCGCGA	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	1992
NspI	RCATGY	2 cut(s)	1471, 2515
NspV	TTCGAA	1 cut(s)	303
OliI	CACNNNNGTG	2 cut(s)	93, 1108
PaeI	GCATGC	1 cut(s)	1471
PaeR7I	CTCGAG	2 cut(s)	579, 1698
PagI	TCATGA	2 cut(s)	1237, 2031
PceI	AGGCCT	1 cut(s)	2921
PctI	GAATGC	5 cut(s)	1369, 1990, 2597, 2900, 2930
PdmI	GAANNNNTTC	2 cut(s)	1482, 1584
PflFI	GACNNNGTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	672
PleI	GAGTC	8 cut(s)	132, 359, 457, 630, 697, 780, 1822, 3025
PpsI	GAGTC	8 cut(s)	132, 359, 457, 630, 697, 780, 1822, 3025
PpuMI	RGGWCCY	2 cut(s)	963, 3009
PshAI	GACNNNNGTC	1 cut(s)	1417
PshBI	ATTAAT	1 cut(s)	3276
Psp124BI	GAGCTC	2 cut(s)	1699, 2782
Psp5II	RGGWCCY	2 cut(s)	963, 3009
Psp6I	CCWGG	4 cut(s)	253, 784, 1159, 1980
PspEI	GGTNACC	2 cut(s)	1976, 2560
PspFI	CCCAGC	1 cut(s)	1463
PspGI	CCWGG	4 cut(s)	253, 784, 1159, 1980
PspPI	GGNCC	7 cut(s)	45, 192, 832, 963, 1383, 2544, 3009
PspPPI	RGGWCCY	2 cut(s)	963, 3009
PspXI	VCTCGAGB	2 cut(s)	579, 1698
PsrI	GAACNNNNNNTAC	2 cut(s)	407, 439
PstI	CTGCAG	3 cut(s)	534, 1777, 3139
PsuI	RGATCY	2 cut(s)	1036, 2338
PsyI	GACNNNGTC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	3068
RruI	TCGCGA	1 cut(s)	262
RsaI	GTAC	9 cut(s)	353, 443, 997, 1440, 1798, 1827, 2395, 2989, 3189
RsaNI	GTAC	9 cut(s)	352, 442, 996, 1439, 1797, 1826, 2394, 2988, 3188
RseI	CAYNNNNRTG	5 cut(s)	93, 937, 1108, 3055, 3107
SacI	GAGCTC	2 cut(s)	1699, 2782
SacII	CCGCGG	1 cut(s)	273
SalI	GTCGAC	2 cut(s)	633, 1024
Sau96I	GGNCC	7 cut(s)	45, 192, 832, 963, 1383, 2544, 3009
ScaI	AGTACT	4 cut(s)	1798, 1827, 2989, 3189
SchI	GAGTC	8 cut(s)	132, 359, 457, 630, 698, 781, 1823, 3026
ScrFI	CCNGG	5 cut(s)	255, 674, 786, 1161, 1982
SduI	GDGCHC	5 cut(s)	100, 382, 824, 1699, 2782
SfcI	CTRYAG	6 cut(s)	291, 530, 1321, 1618, 1773, 3135
Sfr274I	CTCGAG	2 cut(s)	579, 1698
Sfr303I	CCGCGG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	273
SinI	GGWCC	6 cut(s)	45, 192, 832, 963, 2544, 3009
SlaI	CTCGAG	2 cut(s)	579, 1698
SmiI	ATTTAAAT	1 cut(s)	2326
SmiMI	CAYNNNNRTG	5 cut(s)	93, 937, 1108, 3055, 3107
SmlI	CTYRAG	4 cut(s)	579, 1698, 1781, 3014
SmoI	CTYRAG	4 cut(s)	579, 1698, 1781, 3014
SpeI	ACTAGT	1 cut(s)	1151
SphI	GCATGC	1 cut(s)	1471
SseBI	AGGCCT	1 cut(s)	2921
SsiI	CCGC	7 cut(s)	234, 240, 267, 270, 272, 2905, 3329
SspI	AATATT	3 cut(s)	852, 1256, 2298
SspMI	CTAG	6 cut(s)	486, 492, 1152, 1422, 2217, 3384
SstI	GAGCTC	2 cut(s)	1699, 2782
StuI	AGGCCT	1 cut(s)	2921
StyD4I	CCNGG	5 cut(s)	253, 672, 784, 1159, 1980
StyI	CCWWGG	3 cut(s)	2334, 2451, 3108
SwaI	ATTTAAAT	1 cut(s)	2326
TaaI	ACNGT	7 cut(s)	196, 1000, 1312, 1721, 1880, 2191, 3433
TaiI	ACGT	2 cut(s)	1141, 1339
TatI	WGTACW	6 cut(s)	351, 441, 1796, 1825, 2987, 3187
TauI	GCSGC	3 cut(s)	237, 243, 272
TseI	GCWGC	9 cut(s)	202, 237, 532, 595, 1389, 1392, 1772, 2259, 3083
TspGWI	ACGGA	4 cut(s)	37, 1516, 1703, 2111
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	6 cut(s)	45, 192, 832, 963, 2544, 3009
VspI	ATTAAT	1 cut(s)	3276
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	9 cut(s)	160, 989, 1349, 1478, 2195, 2321, 2579, 2748, 3241
XbaI	TCTAGA	1 cut(s)	1421
XceI	RCATGY	2 cut(s)	1471, 2515
XhoI	CTCGAG	2 cut(s)	579, 1698
XmiI	GTMKAC	5 cut(s)	136, 634, 1025, 1398, 1683
XmnI	GAANNNNTTC	2 cut(s)	1482, 1584
XspI	CTAG	6 cut(s)	486, 492, 1152, 1422, 2217, 3384
ZrmI	AGTACT	4 cut(s)	1798, 1827, 2989, 3189
Zsp2I	ATGCAT	1 cut(s)	1992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.