Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002358

Physical Location & Seq

Genomic Coordinates Forward (+)

17770848 .. 17788319

Gene Structure 17472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG101400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3243 bp

ATGAGAAGACTAGAACGTTTGAGAGTCTTAAGATGTGAGATGAAAAAGGAAGAAGAGTACCTGAAGGGATCCACCACCACAGCGATGGAGGGGTTAAGGCAACTGGAGGCCTTGTGTGAGAGGTTGTACAATTCGCAGGACTCGGTTGAGCGAGCCCACGCCGAAAACACTCTCAAATGCTTTTCTGTGAACATTGAATACATTTCGCAATGCCAATACATTCTTGATAATGCCATGACGCCGTATGCTCTGATGCTAGCTAGCTCTAGTTTGTTGAAGCAAGTCACTGATCATAGCCTTGCCTTGCAGCTTCGTCTTGATATCCGGAGCTACCTTGTAAACTATCTGGCCACTAGAGGACCTGAGTTGCAGCCGTTTGTTACTGCTTCCTTAATCCAACTCTTATGTCGACTCACCAAGTTTGGGTGGTTTGATGATGACAGATTCAAGGATGTGGTTAAAGAGTCCATGAACTTCTTGAACCAGGCAACTTCTGATCACTATGCCATTGGTTTGAAGATATTAAACCAACTTGTGTCTGAGATGAATCAGCCTAATCCAGGGTTGCCTTCAACACATCATCGAAGGGTTGCCTGCAACTTCAGGGATCAGTCTCTTTTCCAAATATTCCAGATCTCTTTAACATCATTGCGCCAACTGGAAAACAATGTTGAAAGTCGTTTGCGAGAGTTGGCTCTTTCTCTTTCTCTTAAATGTTTATCTTTTGATTTTGTTGGGACATCAATTGATGAAAGTTCAGAAGAATTTGGTACTGTTCAGATCCCAACTTCTTGGAGGTCAGTTTTGGAGGATCCTTCAACACTTCAAGTCTTCTTTGATTACTATGCCATTACAAAGGCCCCTCTGTCAAAGGAGGCACTGGAGTGCTTGGTGCGATTGGCTTCTGTTAGACGATCTTTGTTTACAAACGATGCTGCTCGTTCAAAGTTTTTGGCCCATTTGATGACAGGAACCAAAGAAATCCTACAAACAGGGCAAGGTCTTGCTGATCATGATAATTACCATGAGTATTGCCGTCTTCTTGGACGTTTCCGAGTTAATTATCAGTTGTCAGAGCTTGTGAATGTGGAAAGTTATAGTGACTGGATTCGATTAGTAGCAGAGTTCACGCTAAAGTCTTTGCAGTCCTGGAAGTGGGCCAGCAGCAGTGTGTACTATCTTTTAGGACTGTGGTCTAGATTGGTGACATCTGTACCATACTTGAAAGGCGAGGCACCCAGCTTGCTTGAAGAATTTGTGCCTAAGATTGCCGAAAGTTTCATCACATCGAGATTTAACTCTGTGCAGGATGGATCTTCAGATGATCTTTCTGAAAACCCACTAGACAATGTTGAACTTCTTCAGGATCAGTTAGATTGCTTCCCTTACCTCTGCAGATTCCAGTATGAAGGCAGTAGTTTATATATAATAAACACAGTGGAACCCATTTTACAAATATACACGGAAAGAGCTCGGATGCCGCCCAGTGAAATCAGTGACCTCTCTGTCATTGAAGCCAAACTTGCTTGGATTGTTCATATCGTTGCTGCTATACTTAAGATAAAACAATGTACTGGTTGTAGTGTTGAGTCCCAAGAACTATTTGATGCGGAACTTTCAGCTCGCATCTTGCAATTGATTAATGTTACCGACAGTGGGGTACACAGCCAGAGATATGGTGAAATAAGCAAGCAAAGGCTTGACCGTGCAATTCTTACCTTTTTCCAACATTTTCGGAAGTCTTATGTTGGTGATCAGGCCATGCATTCTTCAAAGCAGTTATATGCGCGCCTTTCTGAACTTCTTGGACTTCATGATCATCTTTTAATGTTGAATGTGATTGTTGGAAAGATTGCTACAAACCTGAAATGTTACACTGAGAGTGAGGAGGTCATTGGTCACACCTTGAGTTTGTTCTTGGAGCTGGCATCTGGATACATGACTGGCAAGCTGCTTTTGAAGTTGGATACTGTTAAATTTATAGTGTCCAATCATACTAGGGAGCACTTCCCCTTTTTAGAAGAATATAGATGTTCTCGTAGTAGAACAACTTTTTATTTTACAATTGGTTGGTTAATATTCATGGAAGACAGCCCTGTGAAGTTTAAATCTTCAATGGATCCACTTTTGCAAGTTTTTATCAATCTCGAATCAACTCCTGATGCAATGTTTCGCACTGATAATGTAAAGTATGCATTAATCGGGCTGATGAGGGATCTTCGGGGAATTGCCATGGCCACAAATAGTCGCAGAACGTTTGGGCTTCTGTTTGATTGGCTGTATCCTGCACACATGCCGCTTCTTTTGAAAGGCATCTTGCATTGGTCTGACACGCCAGAGGTTACTACCCCTTTGTTGAAATTCATGGCTGAGTTTGTACTGAACAAAGCCCAACGATTGACTTTTGACTCATCTTCTCCTAATGGCATACTTCTTTTCCGAGAAGTCAGTAAATTGATTGTTGCTTATGGGTCAAGGATTCTGTCTCTTCCAAACGTTGCTGATATATATGCCTTCAAATACAAGGGAATATGGATTTCTTTAACTATTCTCACGAGAGCTCTTGCTGGAAACTATGTCAACTTTGGGGTGTTTGAGCTATATGGAGATAGAGCACTTTCTGATGCACTTGATATTGCACTAAAGTTGGCATTATCAATTCCTTTGGCTGATATATTGGCATTCCGTAAGCTGACAAGAGCCTACTTTGCGTTTTTAGAGGTCTTATTCAACAGCCACATAGTTTACATACTGAATCTGGATACCAGTACTTTTATGCATATTGTTGGATCTCTTGAATCTGGCCTCAAAGGTCTAGATACAAGTATCTCATCACAGTGTGCATCTGCTGTAGATAATTTGGCTGCCTTTTATTTTAACAACATTACCATGGGCGAGGCACCTACATTACCTACTGCAGTAAATCTTGCTCGCCACATTGCAGACTGCCCCAATTTGTTTCCAGAAATACTGAAGACTCTGTTTGAGATTGTTTTATTCGAGGACTGTGGCAACCAGTGGAGTCTTAGCAGACCAATGCTGAGCTTAATTCTTATTAGTGAGCAGATATTCTCTGATTTGAAAGTTCGGATCATGGCTTCACAGCCAGTGGATCATCACCAGCGGCTTTCCCTGTGTTTTGACAAGCTAATGGCAGATGTTACTAGGAGCTTGGATTCAAAGAACAGGGACAAGTTCACTCAAAACCTCACTGTATTCAGAAATGATTTTCGTGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0019899 GO:0031267 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051020 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N

Protein Analysis

1080

Amino Acids

123.18

Weight (kDa)

6.22

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	54 - 117	1.8e-07	Importin-beta N-terminal domain
TPR_XPO7	PF25795	439 - 680	3e-95	Exportin-7-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120
fragaria_vesca	FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530
malus_domestica	MD02G1207800.v1.1 MD07G1118000.v1.1
prunus_persica	Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G051400_v2.0.a1
pyrus_communis	pycom02g17010 pycom07g10620
rosa_chinensis	RchiOBHm_Chr1g0329811
rosa_laevigata	RLG00000029862
rosa_multiflora	Rmu_co8519431.1_g000001 Rmu_sc0003459.1_g000016
rosa_roxburghii	Rroxscaffold_4G00320670
rosa_rugosa	Rorug01G0083100 Rorug01G0083200 Rorug01G0083300 Rorug01G0083400
rosa_samantha	Rh1AG101400 Rh1BG080600 Rh1CG097100 Rh1DG104700
rosa_wichuraiana	Rw1G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1505
AccB1I	GGYRCC	2 cut(s)	1234, 2899
AccI	GTMKAC	1 cut(s)	409
AccII	CGCG	1 cut(s)	1789
AccIII	TCCGGA	1 cut(s)	324
AciI	CCGC	4 cut(s)	1481, 1610, 2297, 3124
AclI	AACGTT	3 cut(s)	16, 2255, 2496
AcoI	YGGCCR	2 cut(s)	348, 2235
AcsI	RAATTY	4 cut(s)	764, 1253, 1976, 2360
AcuI	CTGAAG	5 cut(s)	83, 586, 1302, 1346, 2993
AcyI	GRCGYC	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	2840
AfaI	GTAC	9 cut(s)	59, 128, 772, 1175, 1215, 1573, 1662, 2379, 2770
AfiI	CCNNNNNNNGG	4 cut(s)	423, 560, 1155, 1656
AflII	CTTAAG	2 cut(s)	28, 1556
AjnI	CCWGG	3 cut(s)	483, 559, 1148
AleI	CACNNNNGTG	1 cut(s)	883
Alw21I	GWGCWC	4 cut(s)	1474, 2007, 2563, 2617
Alw26I	GTCTC	2 cut(s)	618, 2490
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	8 cut(s)	108, 348, 858, 954, 1158, 1758, 2235, 2803
ApeKI	GCWGC	7 cut(s)	307, 370, 935, 1164, 1547, 1951, 2864
ApoI	RAATTY	4 cut(s)	764, 1253, 1976, 2360
AseI	ATTAAT	2 cut(s)	1641, 2198
Asp700I	GAANNNNTTC	1 cut(s)	1359
AspLEI	GCGC	3 cut(s)	654, 1789, 1791
AspS9I	GGNCC	4 cut(s)	359, 859, 955, 1158
AsuHPI	GGTGA	5 cut(s)	406, 1216, 1691, 1763, 3110
AsuNHI	GCTAGC	2 cut(s)	256, 260
AvaII	GGWCC	1 cut(s)	359
BaeI	ACNNNNGTAYC	2 cut(s)	1197, 1230
BalI	TGGCCA	2 cut(s)	350, 2237
BamHI	GGATCC	3 cut(s)	68, 811, 2119
BanI	GGYRCC	2 cut(s)	1234, 2899
BanII	GRGCYC	3 cut(s)	157, 1474, 2563
BauI	CACGAG	1 cut(s)	2554
BbsI	GAAGAC	5 cut(s)	13, 823, 1031, 2094, 2981
Bbv12I	GWGCWC	4 cut(s)	1474, 2007, 2563, 2617
BbvI	GCAGC	7 cut(s)	319, 382, 922, 1176, 1534, 1938, 2851
BccI	CCATC	2 cut(s)	79, 1304
BceAI	ACGGC	3 cut(s)	226, 358, 1020
BciT130I	CCWGG	3 cut(s)	485, 561, 1150
BciVI	GTATCC	4 cut(s)	1928, 1960, 2292, 2755
BclI	TGATCA	5 cut(s)	289, 496, 1009, 1753, 1816
BcoDI	GTCTC	2 cut(s)	618, 2490
BfmI	CTRYAG	3 cut(s)	1393, 2850, 2916
BfrI	CTTAAG	2 cut(s)	28, 1556
BfuI	GTATCC	4 cut(s)	1928, 1960, 2292, 2755
BglII	AGATCT	1 cut(s)	633
BlpI	GCTNAGC	1 cut(s)	3041
BmcAI	AGTACT	1 cut(s)	2770
Bme1390I	CCNGG	3 cut(s)	485, 561, 1150
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	4 cut(s)	359, 859, 955, 1158
BmiI	GGNNCC	8 cut(s)	70, 813, 861, 973, 1236, 1443, 2121, 2901
BmrFI	CCNGG	3 cut(s)	485, 561, 1150
BmrI	ACTGGG	1 cut(s)	1479
BmtI	GCTAGC	2 cut(s)	260, 264
BmuI	ACTGGG	1 cut(s)	1479
BoxI	GACNNNNGTC	1 cut(s)	1192
BpiI	GAAGAC	5 cut(s)	13, 823, 1031, 2094, 2981
BpmI	CTGGAG	2 cut(s)	125, 902
Bpu1102I	GCTNAGC	1 cut(s)	3041
BpuEI	CTTGAG	1 cut(s)	1927
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	560, 2232, 2889
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	423, 560, 1155, 1656
Bse3DI	GCAATG	4 cut(s)	215, 647, 2172, 2937
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	485, 561, 1150
BseDI	CCNNGG	3 cut(s)	560, 2232, 2889
BseGI	GGATG	3 cut(s)	457, 1315, 1482
BseLI	CCNNNNNNNGG	4 cut(s)	423, 560, 1155, 1656
BseMI	GCAATG	4 cut(s)	215, 647, 2172, 2937
BseMII	CTCAG	5 cut(s)	354, 531, 1869, 2361, 3032
BsePI	GCGCGC	1 cut(s)	1787
BseRI	GAGGAG	1 cut(s)	1901
BseXI	GCAGC	7 cut(s)	319, 382, 922, 1176, 1534, 1938, 2851
BseYI	CCCAGC	1 cut(s)	1238
BsgI	GTGCAG	2 cut(s)	1325, 2271
Bsh1236I	CGCG	1 cut(s)	1789
BshFI	GGCC	8 cut(s)	110, 350, 860, 956, 1160, 1760, 2237, 2805
BshNI	GGYRCC	2 cut(s)	1234, 2899
BsiHKAI	GWGCWC	4 cut(s)	1474, 2007, 2563, 2617
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	3 cut(s)	751, 1576, 3203
BslI	CCNNNNNNNGG	4 cut(s)	423, 560, 1155, 1656
BsmAI	GTCTC	2 cut(s)	618, 2490
BsmFI	GGGAC	3 cut(s)	751, 1576, 3203
BsmI	GAATGC	2 cut(s)	1765, 2681
BsnI	GGCC	8 cut(s)	110, 350, 860, 956, 1160, 1760, 2237, 2805
Bsp1286I	GDGCHC	5 cut(s)	157, 1474, 2007, 2563, 2617
Bsp13I	TCCGGA	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	126
Bsp1720I	GCTNAGC	1 cut(s)	3041
Bsp19I	CCATGG	2 cut(s)	2232, 2889
BspACI	CCGC	4 cut(s)	1481, 1610, 2297, 3124
BspANI	GGCC	8 cut(s)	110, 350, 860, 956, 1160, 1760, 2237, 2805
BspCNI	CTCAG	5 cut(s)	355, 532, 1870, 2362, 3033
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	1789
BspHI	TCATGA	2 cut(s)	1012, 1813
BspLI	GGNNCC	8 cut(s)	70, 813, 861, 973, 1236, 1443, 2121, 2901
BspMAI	CTGCAG	2 cut(s)	1397, 2920
BspOI	GCTAGC	2 cut(s)	260, 264
BspT107I	GGYRCC	2 cut(s)	1234, 2899
BspTI	CTTAAG	2 cut(s)	28, 1556
BsrDI	GCAATG	4 cut(s)	215, 647, 2172, 2937
BsrGI	TGTACA	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	560, 2232, 2889
BssHII	GCGCGC	1 cut(s)	1787
BssNI	GRCGYC	1 cut(s)	239
BssSI	CACGAG	1 cut(s)	2554
BssT1I	CCWWGG	2 cut(s)	2232, 2889
Bst2BI	CACGAG	1 cut(s)	2554
Bst2UI	CCWGG	3 cut(s)	485, 561, 1150
Bst4CI	ACNGT	9 cut(s)	775, 1191, 1438, 1655, 1706, 1972, 2838, 3008, 3214
Bst6I	CTCTTC	2 cut(s)	48, 2493
BstACI	GRCGYC	1 cut(s)	239
BstAFI	CTTAAG	2 cut(s)	28, 1556
BstAUI	TGTACA	1 cut(s)	126
BstDEI	CTNAG	7 cut(s)	363, 540, 1263, 1878, 2370, 3026, 3041
BstDSI	CCRYGG	2 cut(s)	2232, 2889
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	457, 1315, 1482
BstFNI	CGCG	1 cut(s)	1789
BstHHI	GCGC	3 cut(s)	654, 1789, 1791
BstMAI	GTCTC	2 cut(s)	618, 2490
BstMWI	GCNNNNNNNGC	2 cut(s)	1523, 2708
BstNI	CCWGG	3 cut(s)	485, 561, 1150
BstNSI	RCATGY	1 cut(s)	2296
BstPAI	GACNNNNGTC	1 cut(s)	1192
BstSCI	CCNGG	3 cut(s)	483, 559, 1148
BstSFI	CTRYAG	3 cut(s)	1393, 2850, 2916
BstUI	CGCG	1 cut(s)	1789
BstV1I	GCAGC	7 cut(s)	319, 382, 922, 1176, 1534, 1938, 2851
BstV2I	GAAGAC	5 cut(s)	13, 823, 1031, 2094, 2981
BstX2I	RGATCY	8 cut(s)	68, 633, 780, 811, 1313, 2119, 2215, 2789
BstXI	CCANNNNNNTGG	3 cut(s)	85, 792, 1676
BstYI	RGATCY	8 cut(s)	68, 633, 780, 811, 1313, 2119, 2215, 2789
BsuI	GTATCC	4 cut(s)	1928, 1960, 2292, 2755
BsuRI	GGCC	8 cut(s)	110, 350, 860, 956, 1160, 1760, 2237, 2805
BtgI	CCRYGG	2 cut(s)	2232, 2889
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	457, 1315, 1482
BtsI	GCAGTG	1 cut(s)	1174
CciI	TCATGA	2 cut(s)	1012, 1813
CfoI	GCGC	3 cut(s)	654, 1789, 1791
Cfr13I	GGNCC	4 cut(s)	359, 859, 955, 1158
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	9 cut(s)	58, 127, 771, 1174, 1214, 1572, 1661, 2378, 2769
CviQI	GTAC	9 cut(s)	58, 127, 771, 1174, 1214, 1572, 1661, 2378, 2769
DdeI	CTNAG	7 cut(s)	363, 540, 1263, 1878, 2370, 3026, 3041
DraI	TTTAAA	1 cut(s)	2107
DraIII	CACNNNGTG	1 cut(s)	2840
DrdI	GACNNNNNNGTC	1 cut(s)	1505
DseDI	GACNNNNNNGTC	1 cut(s)	1505
EaeI	YGGCCR	2 cut(s)	348, 2235
Eam1104I	CTCTTC	2 cut(s)	48, 2493
EarI	CTCTTC	2 cut(s)	48, 2493
Ecl136II	GAGCTC	2 cut(s)	1472, 2561
Eco130I	CCWWGG	2 cut(s)	2232, 2889
Eco147I	AGGCCT	1 cut(s)	110
Eco24I	GRGCYC	3 cut(s)	157, 1474, 2563
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	2 cut(s)	1472, 2561
Eco57I	CTGAAG	5 cut(s)	83, 586, 1302, 1346, 2993
EcoICRI	GAGCTC	2 cut(s)	1472, 2561
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoO109I	RGGNCCY	2 cut(s)	359, 859
EcoRII	CCWGG	3 cut(s)	483, 559, 1148
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	2232, 2889
EcoT22I	ATGCAT	3 cut(s)	1767, 2197, 2781
EcoT38I	GRGCYC	3 cut(s)	157, 1474, 2563
ErhI	CCWWGG	2 cut(s)	2232, 2889
FalI	AAGNNNNNCTT	2 cut(s)	1506, 1538
FaqI	GGGAC	3 cut(s)	751, 1576, 3203
FbaI	TGATCA	5 cut(s)	289, 496, 1009, 1753, 1816
FblI	GTMKAC	1 cut(s)	409
FokI	GGATG	3 cut(s)	464, 1322, 1489
FriOI	GRGCYC	3 cut(s)	157, 1474, 2563
GlaI	GCGC	3 cut(s)	653, 1788, 1790
GsaI	CCCAGC	1 cut(s)	1242
GsuI	CTGGAG	2 cut(s)	125, 902
HaeIII	GGCC	8 cut(s)	110, 350, 860, 956, 1160, 1760, 2237, 2805
HapII	CCGG	1 cut(s)	325
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	3 cut(s)	654, 1789, 1791
Hin1I	GRCGYC	1 cut(s)	239
Hin6I	GCGC	3 cut(s)	652, 1787, 1789
HinP1I	GCGC	3 cut(s)	652, 1787, 1789
HincII	GTYRAC	2 cut(s)	410, 2581
HindII	GTYRAC	2 cut(s)	410, 2581
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	5 cut(s)	406, 1216, 1691, 1763, 3110
HpyAV	CCTTC	6 cut(s)	58, 579, 579, 825, 1403, 2524
HpyCH4III	ACNGT	9 cut(s)	775, 1191, 1438, 1655, 1706, 1972, 2838, 3008, 3214
HpyCH4IV	ACGT	4 cut(s)	16, 1048, 2255, 2496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1523, 2708
HpyF3I	CTNAG	7 cut(s)	363, 540, 1263, 1878, 2370, 3026, 3041
HpySE526I	ACGT	4 cut(s)	16, 1048, 2255, 2496
Hsp92I	GRCGYC	1 cut(s)	239
HspAI	GCGC	3 cut(s)	652, 1787, 1789
Kpn2I	TCCGGA	1 cut(s)	324
Ksp22I	TGATCA	5 cut(s)	289, 496, 1009, 1753, 1816
LmnI	GCTCC	4 cut(s)	327, 1921, 2002, 3168
Lsp1109I	GCAGC	7 cut(s)	319, 382, 922, 1176, 1534, 1938, 2851
MaeII	ACGT	4 cut(s)	16, 1048, 2255, 2496
MfeI	CAATTG	3 cut(s)	744, 1634, 2064
MflI	RGATCY	8 cut(s)	68, 633, 780, 811, 1313, 2119, 2215, 2789
MhlI	GDGCHC	5 cut(s)	157, 1474, 2007, 2563, 2617
MlsI	TGGCCA	2 cut(s)	350, 2237
MluNI	TGGCCA	2 cut(s)	350, 2237
MlyI	GAGTC	8 cut(s)	33, 134, 405, 473, 1598, 2402, 2971, 3031
MmeI	TCCRAC	5 cut(s)	421, 1750, 1825, 1944, 2767
Mox20I	TGGCCA	2 cut(s)	350, 2237
Mph1103I	ATGCAT	3 cut(s)	1767, 2197, 2781
MroI	TCCGGA	1 cut(s)	324
MroXI	GAANNNNTTC	1 cut(s)	1359
MscI	TGGCCA	2 cut(s)	350, 2237
MslI	CAYNNNNRTG	4 cut(s)	83, 883, 2836, 2888
Msp20I	TGGCCA	2 cut(s)	350, 2237
MspA1I	CMGCKG	1 cut(s)	3124
MspCI	CTTAAG	2 cut(s)	28, 1556
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	3 cut(s)	485, 561, 1150
MunI	CAATTG	3 cut(s)	744, 1634, 2064
Mva1269I	GAATGC	2 cut(s)	1765, 2681
MvaI	CCWGG	3 cut(s)	485, 561, 1150
MvnI	CGCG	1 cut(s)	1789
MwoI	GCNNNNNNNGC	2 cut(s)	1523, 2708
NcoI	CCATGG	2 cut(s)	2232, 2889
NheI	GCTAGC	2 cut(s)	256, 260
NlaIV	GGNNCC	8 cut(s)	70, 813, 861, 973, 1236, 1443, 2121, 2901
NmuCI	GTSAC	5 cut(s)	283, 1100, 1204, 1496, 1898
NsiI	ATGCAT	3 cut(s)	1767, 2197, 2781
NspI	RCATGY	1 cut(s)	2296
OliI	CACNNNNGTG	1 cut(s)	883
PagI	TCATGA	2 cut(s)	1012, 1813
PauI	GCGCGC	1 cut(s)	1787
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	2 cut(s)	1765, 2681
PdmI	GAANNNNTTC	1 cut(s)	1359
PfeI	GAWTC	9 cut(s)	444, 547, 1108, 1398, 2150, 2479, 2755, 2798, 3176
PfoI	TCCNGGA	1 cut(s)	1148
PleI	GAGTC	8 cut(s)	32, 134, 405, 472, 1597, 2402, 2971, 3030
PpsI	GAGTC	8 cut(s)	32, 134, 405, 472, 1597, 2402, 2971, 3030
PpuMI	RGGWCCY	1 cut(s)	359
PshAI	GACNNNNGTC	1 cut(s)	1192
PshBI	ATTAAT	2 cut(s)	1641, 2198
Psp124BI	GAGCTC	2 cut(s)	1474, 2563
Psp1406I	AACGTT	3 cut(s)	16, 2255, 2496
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	3 cut(s)	483, 559, 1148
PspFI	CCCAGC	1 cut(s)	1238
PspGI	CCWGG	3 cut(s)	483, 559, 1148
PspN4I	GGNNCC	8 cut(s)	70, 813, 861, 973, 1236, 1443, 2121, 2901
PspPI	GGNCC	4 cut(s)	359, 859, 955, 1158
PspPPI	RGGWCCY	1 cut(s)	359
PsrI	GAACNNNNNNTAC	4 cut(s)	182, 214, 1434, 1466
PstI	CTGCAG	2 cut(s)	1397, 2920
PsuI	RGATCY	8 cut(s)	68, 633, 780, 811, 1313, 2119, 2215, 2789
PteI	GCGCGC	1 cut(s)	1787
RsaI	GTAC	9 cut(s)	59, 128, 772, 1175, 1215, 1573, 1662, 2379, 2770
RsaNI	GTAC	9 cut(s)	58, 127, 771, 1174, 1214, 1572, 1661, 2378, 2769
RseI	CAYNNNNRTG	4 cut(s)	83, 883, 2836, 2888
SacI	GAGCTC	2 cut(s)	1474, 2563
SalI	GTCGAC	1 cut(s)	408
Sau96I	GGNCC	4 cut(s)	359, 859, 955, 1158
ScaI	AGTACT	1 cut(s)	2770
SchI	GAGTC	8 cut(s)	33, 134, 405, 473, 1598, 2402, 2971, 3031
ScrFI	CCNGG	3 cut(s)	485, 561, 1150
SduI	GDGCHC	5 cut(s)	157, 1474, 2007, 2563, 2617
SfcI	CTRYAG	3 cut(s)	1393, 2850, 2916
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	4 cut(s)	83, 883, 2836, 2888
SmlI	CTYRAG	3 cut(s)	28, 1556, 1906
SmoI	CTYRAG	3 cut(s)	28, 1556, 1906
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	4 cut(s)	1481, 1610, 2297, 3124
SspI	AATATT	2 cut(s)	627, 2079
SstI	GAGCTC	2 cut(s)	1474, 2563
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	483, 559, 1148
StyI	CCWWGG	2 cut(s)	2232, 2889
TaaI	ACNGT	9 cut(s)	775, 1191, 1438, 1655, 1706, 1972, 2838, 3008, 3214
TaiI	ACGT	4 cut(s)	19, 1051, 2258, 2499
TaqI	TCGA	6 cut(s)	409, 583, 1111, 1289, 2148, 3000
TatI	WGTACW	5 cut(s)	126, 1173, 1571, 2377, 2768
TauI	GCSGC	3 cut(s)	1483, 2299, 3127
TfiI	GAWTC	9 cut(s)	444, 547, 1108, 1398, 2150, 2479, 2755, 2798, 3176
TseFI	GTSAC	5 cut(s)	283, 1100, 1204, 1496, 1898
TseI	GCWGC	7 cut(s)	307, 370, 935, 1164, 1547, 1951, 2864
Tsp45I	GTSAC	5 cut(s)	283, 1100, 1204, 1496, 1898
TspGWI	ACGGA	2 cut(s)	1478, 2675
Vha464I	CTTAAG	2 cut(s)	28, 1556
VpaK11BI	GGWCC	1 cut(s)	359
VspI	ATTAAT	2 cut(s)	1641, 2198
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	4 cut(s)	764, 1253, 1976, 2360
XbaI	TCTAGA	2 cut(s)	1196, 2815
XceI	RCATGY	1 cut(s)	2296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	1359
ZrmI	AGTACT	1 cut(s)	2770
Zsp2I	ATGCAT	3 cut(s)	1767, 2197, 2781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.