Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002358

Physical Location & Seq

Genomic Coordinates Forward (+)

13607174 .. 13609349

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0083300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTTTAGAGGCTTGCAGGAGGACGGATGTGCACAGGAACGGGAAAAAGATGCAGTGGGTGTGCGTTGGCTTGTTTGCGCAGCAGGGATGCTTCGGTGGCAGCAGGCTGGAACGCAGGGGGCTGCAGGGAGGGGACAGCAGGAGCTGCTGTGCAAGCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGTATGCACTGTGCTTTTGGAGATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTACATTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGAAGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAGCAAGACCCAAAAGCTAAAGTTCAGTTTATTATATCCTGTTCTTCATTCCATTATATGTAGTAATAGAAAGACAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0019899 GO:0031267 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051020 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N

Protein Analysis

145

Amino Acids

16.23

Weight (kDa)

9.19

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP41	PF04176	52 - 93	3.7e-07	TIP41-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120
fragaria_vesca	FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530
malus_domestica	MD02G1207800.v1.1 MD07G1118000.v1.1
prunus_persica	Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G051400_v2.0.a1
pyrus_communis	pycom02g17010 pycom07g10620
rosa_chinensis	RchiOBHm_Chr1g0329811
rosa_laevigata	RLG00000029862
rosa_multiflora	Rmu_co8519431.1_g000001 Rmu_sc0003459.1_g000016
rosa_roxburghii	Rroxscaffold_4G00320670
rosa_rugosa	Rorug01G0083100 Rorug01G0083200 Rorug01G0083300 Rorug01G0083400
rosa_samantha	Rh1AG101400 Rh1BG080600 Rh1CG097100 Rh1DG104700
rosa_wichuraiana	Rw1G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	79
AclWI	GGATC	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	7 cut(s)	145, 157, 249, 263, 275, 305, 373
AluI	AGCT	7 cut(s)	145, 157, 249, 263, 275, 305, 373
Alw21I	GWGCWC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	145
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	8 cut(s)	80, 100, 122, 145, 249, 281, 305, 308
AspLEI	GCGC	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	8 cut(s)	92, 109, 112, 132, 236, 268, 292, 295
BccI	CCATC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciVI	GTATCC	2 cut(s)	184, 284
BfaI	CTAG	1 cut(s)	436
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	2 cut(s)	184, 284
BisI	GCNGC	8 cut(s)	81, 101, 123, 146, 250, 282, 306, 309
BlsI	GCNGC	8 cut(s)	82, 102, 124, 147, 251, 283, 307, 310
BmsI	GCATC	2 cut(s)	40, 78
BpmI	CTGGAG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 207, 237
BseGI	GGATG	2 cut(s)	32, 93
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	8 cut(s)	92, 109, 112, 132, 236, 268, 292, 295
BsiHKAI	GWGCWC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	314
BssMI	GATC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	14, 105, 155
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	32, 93
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 145, 154, 281
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	8 cut(s)	92, 109, 112, 132, 236, 268, 292, 295
BsuI	GTATCC	2 cut(s)	184, 284
BtsCI	GGATG	2 cut(s)	32, 93
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 202
Cac8I	GCNNGC	3 cut(s)	14, 105, 155
CaiI	CAGNNNCTG	1 cut(s)	145
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	321
FaeI	CATG	1 cut(s)	358
FaiI	YATR	6 cut(s)	179, 200, 356, 391, 413, 415
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	8 cut(s)	81, 101, 123, 146, 250, 282, 306, 309
FokI	GGATG	2 cut(s)	39, 100
Fsp4HI	GCNGC	8 cut(s)	81, 101, 123, 146, 250, 282, 306, 309
FspBI	CTAG	1 cut(s)	436
FspI	TGCGCA	1 cut(s)	79
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	8 cut(s)	81, 101, 123, 146, 250, 282, 306, 309
GsuI	CTGGAG	1 cut(s)	274
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	2 cut(s)	155, 273
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	242, 355
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	7 cut(s)	16, 32, 53, 125, 153, 202, 284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 145, 154, 281
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	8 cut(s)	92, 109, 112, 132, 236, 268, 292, 295
LweI	GCATC	2 cut(s)	40, 78
MaeI	CTAG	1 cut(s)	436
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	230, 392
MhlI	GDGCHC	1 cut(s)	34
MnlI	CCTC	2 cut(s)	13, 123
MseI	TTAA	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	97, 145, 154, 281
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	358
NsbI	TGCGCA	1 cut(s)	79
PagI	TCATGA	1 cut(s)	354
PkrI	GCNGC	8 cut(s)	82, 102, 124, 147, 251, 283, 307, 310
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	8 cut(s)	81, 101, 123, 146, 250, 282, 306, 309
Sau3AI	GATC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	7 cut(s)	147, 159, 251, 265, 277, 307, 375
SfaNI	GCATC	2 cut(s)	40, 78
SfcI	CTRYAG	1 cut(s)	123
SspMI	CTAG	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	60, 209
TseI	GCWGC	8 cut(s)	80, 100, 122, 145, 249, 281, 305, 308
TspDTI	ATGAA	1 cut(s)	392
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	60, 209
VneI	GTGCAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.