Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002358

Physical Location & Seq

Genomic Coordinates Forward (+)

12631515 .. 12650129

Gene Structure 18615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGGAGGGGTTAAGGCAACTGGAGGCCTTGTGTGAGAGGTTGTACAATTCGCAGGACTCGGTTGAGCGAGCCCACGCCGAAAACACTCTCAAATGCTTTTCTGTGAACATTGAATACATTTCGCAATGCCAGTACATTCTTGATAATGCCATGACGCCGTATGCTCTGATGCTAGCTAGCTCTAGTTTGTTGAAGCAAGTCACTGATCATAGCCTTGCCTTGCAGCTTCGTCTTGATATCCGGAGCTACCTTGTAAACTATCTGGCCACTAGAGGACCTGAGTTGCAGCCGTTTGTTACTGCTTCCTTAATCCAACTCTTATGTCGACTCACCAAGTTTGGGTGGTTTGATGATGACAGATTCAAGGATGTGGTTAAAGAGTCCATGAACTTCTTGAACCAGGCAACTTCTGATCACTATGCCATTGGTTTGAAGATATTAAACCAACTTGTTTCTGAGATGAATCAGCCTAATCCAGGGTTGCCTTCAACGCATCATCGAAGGGTTGCCTGCAACTTCAGGGATCAGTCTCTTTTCCAAATATTCCAGATCTCTTTAACATCATTGCGCCAACTGGAAAACAATGTTGAAAGTCGATTGCGAGAGTTGGCTCTTTCTCTTTCTCTTAAATGTTTATCTTTTGATTTTGTTGGGACATCAATTGATGAAAGTTCAGAAGAATTTGGTACTGTTCAGATCCCAACTTCTTGGAGGTCAGTTTTGGAGGATCCTTCAACACTTCAAGTCTTCTTCGATTACTATGCCATTACAAAGGCCCCTCTGTCAAAGGAGGCACTGGAGTGCTTGGTGCGACTGGCTTCTGTTAGACGATCTTTGTTTACAAATGATGCTGCTCGTTCAAAGTTTTTGGCCCATTTGATGACAGGAACCAAAGAAATTCTACAAACAGGGCAAGGTCTTGCTGATCATGATAATTACCATGAGTATTGCCGTCTTCTTGGACGTTTCCGAGTTAATTATCAGTTGTCAGAGCTTGTGAATGTGGAAGGTTATAGTGACTGGATTCGATTAGTAGCAGAGTTCACGCTAAAGTCTTTGCAGTCCTGGAAGTGGGCCAGCAGCAGTGTATACTATCTTTTAGGACTCTGGTCTAGATTGGTGACATCTGTACCATACTTGAAAGGCGAGGCACCCAGCTTGCTTGAAGAATTTGTGCCTAAGATTGCCGAAAGTTTCATCACATCGAGATTTAACTCTGTGCAGGATGGATCTTCAGATGATCTTTCTGAAAACCCACTAGACAATGTTGAACTTCTTCAGGATCAGTTAGATTGCTTCCCTTACCTCTGCAGATTCCAGTATGAAAGCAGTAGTTTATATATAATAAACACAGTGGAACCCATTTTACAAATATACACGGAAAGAGCTCGCATGCCGCCCAGTGAAACCAGTGACCTCTCTGTCATTGAAGCCAAACTTGCTTGGATTGTTCATATTGTTGCTGCTATTCTTAAGATAAAACAATGTACTGGTTGTAGTGTTGAGTCACAAGAACTATTTGATGCGGAACTTTCAGCTCGCATCTTGCAATTGATTAATGTTACCGACAGTGGGGTACACAGCCAGAGATATGGTGAAATAAGCAAGCAAAGACTTGACCGTGCAATTCTTACCTTTTTCCAACATTTTCGGAAGTCTTATGTTGGTGATCAGGCCATGCATTCTTCGAAGTTATATGCACGCCTTTCTGAACTTCTTGGACTTCATGATCATCTTTTAATGTTGAATGTGATTGTTGGAAAGATTGCTACAAACCTGAAATGTTACACCGAGAGTGAGGAGGTCATTGGTCACACCTTGAGTTTGTTCTTGGAGCTGGCATCTGGATACATGACTGGCAAGCTGCTTTTGAAGTTGGATACTGTTAAATTTATAGTGTCCAATCATACTAGGGAGCACTTCCCCTTTTTGGAAGAATATAGATGTTCTCGTAGTAGAACAACTTTTTATTTTACAATTGGTTGGTTAATATTCATGGAAGATAGCCCTGTGAAGTTTAAATCTTCAATGGATCCACTTTTGCAAGTTTTTATCAATCTCGAATCAACTCCTGATGCAATGTTTCGCACTGATAATGTAAAGTATGCATTAATCGGGCTGATGAGGGATCTTCGGGGAATTGCCATGGCCACAAATAGTCGCAGAACGTTTGGGCTTCTGTTTGATTGGCTGTATCCTGCACACATGCCACTTCTTTTGAAAGGCATCTTGCACTGGTCTGATACACCAGAGGTTACTACCCCTTTGTTGAAATTCATGGCTGAGTTTGTACTGAACAAAGCCCAACGCTTGACTTTTGACTCATCTTCTCCTAATGGCATACTTCTTTTCCGAGAAGTCAGTAAACTGATAGTTGCTTATGGGTCAAGGATTCTGTCTCTTCCAAACGTTGCTGATATATATGCCTTCAAATACAAGGGAATATGGATTTCTTTAACTATTCTCACGAGAGCTCTTGCTGGAAACTATGTCAACTTTGGGGTGTTTGAGCTGTATGGAGATAGAGCACTTTCTGATGCACTTGATATTGCACTAAAGTTGGCATTATCAATTCCTTTGGCTGATATATTGGCATTCCGTAAGCTGACAAGAGCCTACTTTGCGTTTTTAGAGGTCTTATTCAACAGCCACATAGTTTACATACTGAATCTGGATACCAGTACTTTTATGCATGTTGTTGGATCTCTTGAATCTGGCCTCAAAGGTCTAGATACAAGTATCTCATCACAGTGTGCGTCTGCTGTTGATAATTTGGCTGCCTTTTATTTTAACAACATTACCATGGGCGAGGCACCTACATTACCTACTGCAGTAAATCTTGCTCTTCACATTGCAGACTGCCCCAATTTGTTTCCAGAAATACTGAAGACTCTGTTTGAGATTGTTTTATTTGAGGATTGTGGCAACCAGTGGAGTCTTAGCAGACCAATGCTGAGCTTAATTCTTATTAGTGAGCAGATATTCTCTGATTTGAAAGTTCGGATCATGGCTTCACAGCCAGTGGATCATCACCAGCGGCTTTCCCTGTGTTTTGACAAGCTAATGGCAGACGTTACTAGGAGTTTGGATTCAAAGAACAGGGACAAGTTCACTCAAAACCTCACTGTATTCAGGAATGATTTTCGTGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0019899 GO:0031267 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051020 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N

Protein Analysis

1051

Amino Acids

119.57

Weight (kDa)

5.99

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	26 - 89	1.7e-07	Importin-beta N-terminal domain
TPR_XPO7	PF25795	411 - 651	4.1e-97	Exportin-7-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120
fragaria_vesca	FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530
malus_domestica	MD02G1207800.v1.1 MD07G1118000.v1.1
prunus_persica	Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G051400_v2.0.a1
pyrus_communis	pycom02g17010 pycom07g10620
rosa_chinensis	RchiOBHm_Chr1g0329811
rosa_laevigata	RLG00000029862
rosa_multiflora	Rmu_co8519431.1_g000001 Rmu_sc0003459.1_g000016
rosa_roxburghii	Rroxscaffold_4G00320670
rosa_rugosa	Rorug01G0083100 Rorug01G0083200 Rorug01G0083300 Rorug01G0083400
rosa_samantha	Rh1AG101400 Rh1BG080600 Rh1CG097100 Rh1DG104700
rosa_wichuraiana	Rw1G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1421
AccB1I	GGYRCC	2 cut(s)	1150, 2812
AccI	GTMKAC	2 cut(s)	325, 1089
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	3 cut(s)	1397, 1526, 3037
AclI	AACGTT	2 cut(s)	2168, 2409
AcoI	YGGCCR	2 cut(s)	264, 2148
AcsI	RAATTY	5 cut(s)	680, 897, 1169, 1889, 2273
AcuI	CTGAAG	4 cut(s)	502, 1218, 1262, 2906
AcyI	GRCGYC	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	2753
AfaI	GTAC	8 cut(s)	44, 134, 688, 1131, 1489, 1578, 2292, 2683
AfiI	CCNNNNNNNGG	5 cut(s)	339, 476, 1071, 1572, 1930
AflII	CTTAAG	1 cut(s)	1472
AjnI	CCWGG	3 cut(s)	399, 475, 1064
AleI	CACNNNNGTG	1 cut(s)	799
Alw21I	GWGCWC	4 cut(s)	1390, 1920, 2476, 2530
Alw26I	GTCTC	2 cut(s)	534, 2403
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	8 cut(s)	24, 264, 774, 870, 1074, 1674, 2148, 2716
ApeKI	GCWGC	7 cut(s)	223, 286, 851, 1080, 1463, 1864, 2777
ApoI	RAATTY	5 cut(s)	680, 897, 1169, 1889, 2273
AseI	ATTAAT	2 cut(s)	1557, 2111
Asp700I	GAANNNNTTC	1 cut(s)	1275
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	4 cut(s)	275, 775, 871, 1074
AsuHPI	GGTGA	5 cut(s)	322, 1132, 1607, 1679, 3023
AsuII	TTCGAA	1 cut(s)	1688
AsuNHI	GCTAGC	2 cut(s)	172, 176
AvaII	GGWCC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	1113, 1146
BalI	TGGCCA	2 cut(s)	266, 2150
BamHI	GGATCC	2 cut(s)	727, 2032
BanI	GGYRCC	2 cut(s)	1150, 2812
BanII	GRGCYC	3 cut(s)	73, 1390, 2476
BauI	CACGAG	1 cut(s)	2467
BbsI	GAAGAC	3 cut(s)	739, 947, 2894
Bbv12I	GWGCWC	4 cut(s)	1390, 1920, 2476, 2530
BbvI	GCAGC	7 cut(s)	235, 298, 838, 1092, 1450, 1851, 2764
BccI	CCATC	1 cut(s)	1220
BceAI	ACGGC	3 cut(s)	142, 274, 936
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	3 cut(s)	401, 477, 1066
BciVI	GTATCC	4 cut(s)	1841, 1873, 2205, 2668
BclI	TGATCA	5 cut(s)	205, 412, 925, 1669, 1729
BcoDI	GTCTC	2 cut(s)	534, 2403
BfaI	CTAG	9 cut(s)	173, 177, 183, 270, 1113, 1259, 1911, 2729, 3078
BfmI	CTRYAG	2 cut(s)	1309, 2829
BfrI	CTTAAG	1 cut(s)	1472
BfuI	GTATCC	4 cut(s)	1841, 1873, 2205, 2668
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	9 cut(s)	224, 287, 852, 1081, 1397, 1464, 1865, 2778, 3038
BlpI	GCTNAGC	1 cut(s)	2954
BlsI	GCNGC	9 cut(s)	225, 288, 853, 1082, 1398, 1465, 1866, 2779, 3039
BmcAI	AGTACT	1 cut(s)	2683
Bme1390I	CCNGG	3 cut(s)	401, 477, 1066
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	4 cut(s)	275, 775, 871, 1074
BmiI	GGNNCC	7 cut(s)	729, 777, 889, 1152, 1359, 2034, 2814
BmrFI	CCNGG	3 cut(s)	401, 477, 1066
BmrI	ACTGGG	1 cut(s)	1395
BmsI	GCATC	9 cut(s)	159, 502, 838, 1513, 1551, 1850, 2065, 2235, 2527
BmtI	GCTAGC	2 cut(s)	176, 180
BmuI	ACTGGG	1 cut(s)	1395
BoxI	GACNNNNGTC	1 cut(s)	1108
BpiI	GAAGAC	3 cut(s)	739, 947, 2894
BpmI	CTGGAG	2 cut(s)	41, 818
Bpu1102I	GCTNAGC	1 cut(s)	2954
Bpu14I	TTCGAA	1 cut(s)	1688
BpuEI	CTTGAG	1 cut(s)	1840
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	476, 2145, 2802
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	5 cut(s)	339, 476, 1071, 1572, 1930
Bse3DI	GCAATG	4 cut(s)	131, 563, 2085, 2850
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	401, 477, 1066
BseDI	CCNNGG	3 cut(s)	476, 2145, 2802
BseGI	GGATG	2 cut(s)	373, 1231
BseLI	CCNNNNNNNGG	5 cut(s)	339, 476, 1071, 1572, 1930
BseMI	GCAATG	4 cut(s)	131, 563, 2085, 2850
BseMII	CTCAG	4 cut(s)	270, 447, 2274, 2945
BseRI	GAGGAG	1 cut(s)	1814
BseXI	GCAGC	7 cut(s)	235, 298, 838, 1092, 1450, 1851, 2764
BseYI	CCCAGC	1 cut(s)	1154
BsgI	GTGCAG	2 cut(s)	1241, 2184
BshFI	GGCC	8 cut(s)	26, 266, 776, 872, 1076, 1676, 2150, 2718
BshNI	GGYRCC	2 cut(s)	1150, 2812
BsiHKAI	GWGCWC	4 cut(s)	1390, 1920, 2476, 2530
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	2 cut(s)	667, 3116
BslI	CCNNNNNNNGG	5 cut(s)	339, 476, 1071, 1572, 1930
BsmAI	GTCTC	2 cut(s)	534, 2403
BsmFI	GGGAC	2 cut(s)	667, 3116
BsmI	GAATGC	2 cut(s)	1681, 2594
BsnI	GGCC	8 cut(s)	26, 266, 776, 872, 1076, 1676, 2150, 2718
Bsp119I	TTCGAA	1 cut(s)	1688
Bsp1286I	GDGCHC	5 cut(s)	73, 1390, 1920, 2476, 2530
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	42
Bsp1720I	GCTNAGC	1 cut(s)	2954
Bsp19I	CCATGG	2 cut(s)	2145, 2802
BspACI	CCGC	3 cut(s)	1397, 1526, 3037
BspANI	GGCC	8 cut(s)	26, 266, 776, 872, 1076, 1676, 2150, 2718
BspCNI	CTCAG	4 cut(s)	271, 448, 2275, 2946
BspEI	TCCGGA	1 cut(s)	240
BspHI	TCATGA	2 cut(s)	928, 1726
BspLI	GGNNCC	7 cut(s)	729, 777, 889, 1152, 1359, 2034, 2814
BspMAI	CTGCAG	2 cut(s)	1313, 2833
BspOI	GCTAGC	2 cut(s)	176, 180
BspQI	GCTCTTC	1 cut(s)	2850
BspT104I	TTCGAA	1 cut(s)	1688
BspT107I	GGYRCC	2 cut(s)	1150, 2812
BspTI	CTTAAG	1 cut(s)	1472
BsrDI	GCAATG	4 cut(s)	131, 563, 2085, 2850
BsrGI	TGTACA	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	476, 2145, 2802
BssNAI	GTATAC	1 cut(s)	1090
BssNI	GRCGYC	1 cut(s)	155
BssSI	CACGAG	1 cut(s)	2467
BssT1I	CCWWGG	2 cut(s)	2145, 2802
Bst1107I	GTATAC	1 cut(s)	1090
Bst2BI	CACGAG	1 cut(s)	2467
Bst2UI	CCWGG	3 cut(s)	401, 477, 1066
Bst4CI	ACNGT	7 cut(s)	691, 1354, 1571, 1622, 1885, 2751, 3127
Bst6I	CTCTTC	2 cut(s)	2406, 2850
BstACI	GRCGYC	1 cut(s)	155
BstAFI	CTTAAG	1 cut(s)	1472
BstAUI	TGTACA	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	1688
BstDEI	CTNAG	6 cut(s)	279, 456, 1179, 2283, 2939, 2954
BstDSI	CCRYGG	2 cut(s)	2145, 2802
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	373, 1231
BstHHI	GCGC	1 cut(s)	570
BstMAI	GTCTC	2 cut(s)	534, 2403
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 1439, 2621
BstNI	CCWGG	3 cut(s)	401, 477, 1066
BstNSI	RCATGY	3 cut(s)	1396, 2209, 2696
BstPAI	GACNNNNGTC	1 cut(s)	1108
BstSCI	CCNGG	3 cut(s)	399, 475, 1064
BstSFI	CTRYAG	2 cut(s)	1309, 2829
BstV1I	GCAGC	7 cut(s)	235, 298, 838, 1092, 1450, 1851, 2764
BstV2I	GAAGAC	3 cut(s)	739, 947, 2894
BstX2I	RGATCY	7 cut(s)	549, 696, 727, 1229, 2032, 2128, 2702
BstXI	CCANNNNNNTGG	2 cut(s)	708, 1592
BstYI	RGATCY	7 cut(s)	549, 696, 727, 1229, 2032, 2128, 2702
BstZ17I	GTATAC	1 cut(s)	1090
BsuI	GTATCC	4 cut(s)	1841, 1873, 2205, 2668
BsuRI	GGCC	8 cut(s)	26, 266, 776, 872, 1076, 1676, 2150, 2718
BtgI	CCRYGG	2 cut(s)	2145, 2802
BtsCI	GGATG	2 cut(s)	373, 1231
BtsI	GCAGTG	1 cut(s)	1090
CciI	TCATGA	2 cut(s)	928, 1726
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	4 cut(s)	275, 775, 871, 1074
CseI	GACGC	2 cut(s)	163, 2745
Csp6I	GTAC	8 cut(s)	43, 133, 687, 1130, 1488, 1577, 2291, 2682
CspCI	CAANNNNNGTGG	2 cut(s)	2199, 2234
CviQI	GTAC	8 cut(s)	43, 133, 687, 1130, 1488, 1577, 2291, 2682
DdeI	CTNAG	6 cut(s)	279, 456, 1179, 2283, 2939, 2954
DraI	TTTAAA	1 cut(s)	2020
DraIII	CACNNNGTG	1 cut(s)	2753
DrdI	GACNNNNNNGTC	1 cut(s)	1421
DseDI	GACNNNNNNGTC	1 cut(s)	1421
EaeI	YGGCCR	2 cut(s)	264, 2148
Eam1104I	CTCTTC	2 cut(s)	2406, 2850
EarI	CTCTTC	2 cut(s)	2406, 2850
Ecl136II	GAGCTC	2 cut(s)	1388, 2474
Eco130I	CCWWGG	2 cut(s)	2145, 2802
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	3 cut(s)	73, 1390, 2476
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	2 cut(s)	1388, 2474
Eco57I	CTGAAG	4 cut(s)	502, 1218, 1262, 2906
EcoICRI	GAGCTC	2 cut(s)	1388, 2474
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	275, 775
EcoRII	CCWGG	3 cut(s)	399, 475, 1064
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	2145, 2802
EcoT22I	ATGCAT	3 cut(s)	1683, 2110, 2694
EcoT38I	GRGCYC	3 cut(s)	73, 1390, 2476
ErhI	CCWWGG	2 cut(s)	2145, 2802
FalI	AAGNNNNNCTT	2 cut(s)	1422, 1454
FaqI	GGGAC	2 cut(s)	667, 3116
FbaI	TGATCA	5 cut(s)	205, 412, 925, 1669, 1729
FblI	GTMKAC	2 cut(s)	325, 1089
Fnu4HI	GCNGC	9 cut(s)	224, 287, 852, 1081, 1397, 1464, 1865, 2778, 3038
FokI	GGATG	2 cut(s)	380, 1238
FriOI	GRGCYC	3 cut(s)	73, 1390, 2476
Fsp4HI	GCNGC	9 cut(s)	224, 287, 852, 1081, 1397, 1464, 1865, 2778, 3038
FspBI	CTAG	9 cut(s)	173, 177, 183, 270, 1113, 1259, 1911, 2729, 3078
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	9 cut(s)	224, 287, 852, 1081, 1397, 1464, 1865, 2778, 3038
GsaI	CCCAGC	1 cut(s)	1158
GsuI	CTGGAG	2 cut(s)	41, 818
HaeIII	GGCC	8 cut(s)	26, 266, 776, 872, 1076, 1676, 2150, 2718
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	2 cut(s)	163, 2745
HhaI	GCGC	1 cut(s)	570
Hin1I	GRCGYC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	2 cut(s)	326, 2494
HindII	GTYRAC	2 cut(s)	326, 2494
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	5 cut(s)	322, 1132, 1607, 1679, 3023
HpyAV	CCTTC	5 cut(s)	495, 495, 741, 1001, 2437
HpyCH4III	ACNGT	7 cut(s)	691, 1354, 1571, 1622, 1885, 2751, 3127
HpyCH4IV	ACGT	4 cut(s)	964, 2168, 2409, 3072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 1439, 2621
HpyF3I	CTNAG	6 cut(s)	279, 456, 1179, 2283, 2939, 2954
HpySE526I	ACGT	4 cut(s)	964, 2168, 2409, 3072
Hsp92I	GRCGYC	1 cut(s)	155
HspAI	GCGC	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	240
Ksp22I	TGATCA	5 cut(s)	205, 412, 925, 1669, 1729
LguI	GCTCTTC	1 cut(s)	2850
LmnI	GCTCC	3 cut(s)	243, 1834, 1915
Lsp1109I	GCAGC	7 cut(s)	235, 298, 838, 1092, 1450, 1851, 2764
LweI	GCATC	9 cut(s)	159, 502, 838, 1513, 1551, 1850, 2065, 2235, 2527
MaeI	CTAG	9 cut(s)	173, 177, 183, 270, 1113, 1259, 1911, 2729, 3078
MaeII	ACGT	4 cut(s)	964, 2168, 2409, 3072
MfeI	CAATTG	3 cut(s)	660, 1550, 1977
MflI	RGATCY	7 cut(s)	549, 696, 727, 1229, 2032, 2128, 2702
MhlI	GDGCHC	5 cut(s)	73, 1390, 1920, 2476, 2530
MlsI	TGGCCA	2 cut(s)	266, 2150
MluNI	TGGCCA	2 cut(s)	266, 2150
MlyI	GAGTC	8 cut(s)	50, 321, 389, 1098, 1514, 2315, 2884, 2944
MmeI	TCCRAC	5 cut(s)	337, 1666, 1738, 1857, 2680
Mox20I	TGGCCA	2 cut(s)	266, 2150
Mph1103I	ATGCAT	3 cut(s)	1683, 2110, 2694
MroI	TCCGGA	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	1275
MscI	TGGCCA	2 cut(s)	266, 2150
MslI	CAYNNNNRTG	3 cut(s)	799, 2749, 2801
Msp20I	TGGCCA	2 cut(s)	266, 2150
MspA1I	CMGCKG	1 cut(s)	3037
MspCI	CTTAAG	1 cut(s)	1472
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	3 cut(s)	401, 477, 1066
MunI	CAATTG	3 cut(s)	660, 1550, 1977
Mva1269I	GAATGC	2 cut(s)	1681, 2594
MvaI	CCWGG	3 cut(s)	401, 477, 1066
MwoI	GCNNNNNNNGC	3 cut(s)	490, 1439, 2621
NcoI	CCATGG	2 cut(s)	2145, 2802
NheI	GCTAGC	2 cut(s)	172, 176
NlaIV	GGNNCC	7 cut(s)	729, 777, 889, 1152, 1359, 2034, 2814
NmuCI	GTSAC	6 cut(s)	199, 1016, 1120, 1412, 1506, 1811
NsiI	ATGCAT	3 cut(s)	1683, 2110, 2694
NspI	RCATGY	3 cut(s)	1396, 2209, 2696
NspV	TTCGAA	1 cut(s)	1688
OliI	CACNNNNGTG	1 cut(s)	799
PaeI	GCATGC	1 cut(s)	1396
PagI	TCATGA	2 cut(s)	928, 1726
PceI	AGGCCT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	2850
PctI	GAATGC	2 cut(s)	1681, 2594
PdmI	GAANNNNTTC	1 cut(s)	1275
PfeI	GAWTC	9 cut(s)	360, 463, 1024, 1314, 2063, 2392, 2668, 2711, 3089
PfoI	TCCNGGA	1 cut(s)	1064
PkrI	GCNGC	9 cut(s)	225, 288, 853, 1082, 1398, 1465, 1866, 2779, 3039
PleI	GAGTC	8 cut(s)	50, 321, 388, 1098, 1513, 2315, 2884, 2943
PpsI	GAGTC	8 cut(s)	50, 321, 388, 1098, 1513, 2315, 2884, 2943
PpuMI	RGGWCCY	1 cut(s)	275
PshAI	GACNNNNGTC	1 cut(s)	1108
PshBI	ATTAAT	2 cut(s)	1557, 2111
Psp124BI	GAGCTC	2 cut(s)	1390, 2476
Psp1406I	AACGTT	2 cut(s)	2168, 2409
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	3 cut(s)	399, 475, 1064
PspFI	CCCAGC	1 cut(s)	1154
PspGI	CCWGG	3 cut(s)	399, 475, 1064
PspN4I	GGNNCC	7 cut(s)	729, 777, 889, 1152, 1359, 2034, 2814
PspPI	GGNCC	4 cut(s)	275, 775, 871, 1074
PspPPI	RGGWCCY	1 cut(s)	275
PsrI	GAACNNNNNNTAC	4 cut(s)	98, 130, 1350, 1382
PstI	CTGCAG	2 cut(s)	1313, 2833
PsuI	RGATCY	7 cut(s)	549, 696, 727, 1229, 2032, 2128, 2702
RsaI	GTAC	8 cut(s)	44, 134, 688, 1131, 1489, 1578, 2292, 2683
RsaNI	GTAC	8 cut(s)	43, 133, 687, 1130, 1488, 1577, 2291, 2682
RseI	CAYNNNNRTG	3 cut(s)	799, 2749, 2801
SacI	GAGCTC	2 cut(s)	1390, 2476
SalI	GTCGAC	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	2850
SatI	GCNGC	9 cut(s)	224, 287, 852, 1081, 1397, 1464, 1865, 2778, 3038
Sau96I	GGNCC	4 cut(s)	275, 775, 871, 1074
ScaI	AGTACT	1 cut(s)	2683
SchI	GAGTC	8 cut(s)	50, 321, 389, 1098, 1514, 2315, 2884, 2944
ScrFI	CCNGG	3 cut(s)	401, 477, 1066
SduI	GDGCHC	5 cut(s)	73, 1390, 1920, 2476, 2530
SfaNI	GCATC	9 cut(s)	159, 502, 838, 1513, 1551, 1850, 2065, 2235, 2527
SfcI	CTRYAG	2 cut(s)	1309, 2829
SfuI	TTCGAA	1 cut(s)	1688
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	3 cut(s)	799, 2749, 2801
SmlI	CTYRAG	2 cut(s)	1472, 1819
SmoI	CTYRAG	2 cut(s)	1472, 1819
SphI	GCATGC	1 cut(s)	1396
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	3 cut(s)	1397, 1526, 3037
SspI	AATATT	2 cut(s)	543, 1992
SspMI	CTAG	9 cut(s)	173, 177, 183, 270, 1113, 1259, 1911, 2729, 3078
SstI	GAGCTC	2 cut(s)	1390, 2476
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	399, 475, 1064
StyI	CCWWGG	2 cut(s)	2145, 2802
TaaI	ACNGT	7 cut(s)	691, 1354, 1571, 1622, 1885, 2751, 3127
TaiI	ACGT	4 cut(s)	967, 2171, 2412, 3075
TaqI	TCGA	8 cut(s)	325, 499, 595, 753, 1027, 1205, 1688, 2061
TatI	WGTACW	5 cut(s)	42, 132, 1487, 2290, 2681
TauI	GCSGC	2 cut(s)	1399, 3040
TfiI	GAWTC	9 cut(s)	360, 463, 1024, 1314, 2063, 2392, 2668, 2711, 3089
TseFI	GTSAC	6 cut(s)	199, 1016, 1120, 1412, 1506, 1811
TseI	GCWGC	7 cut(s)	223, 286, 851, 1080, 1463, 1864, 2777
Tsp45I	GTSAC	6 cut(s)	199, 1016, 1120, 1412, 1506, 1811
TspDTI	ATGAA	9 cut(s)	401, 476, 681, 1186, 1338, 1442, 1715, 1984, 2266
TspGWI	ACGGA	2 cut(s)	1394, 2588
Vha464I	CTTAAG	1 cut(s)	1472
VpaK11BI	GGWCC	1 cut(s)	275
VspI	ATTAAT	2 cut(s)	1557, 2111
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	5 cut(s)	680, 897, 1169, 1889, 2273
XbaI	TCTAGA	2 cut(s)	1112, 2728
XceI	RCATGY	3 cut(s)	1396, 2209, 2696
XmiI	GTMKAC	2 cut(s)	325, 1089
XmnI	GAANNNNTTC	1 cut(s)	1275
XspI	CTAG	9 cut(s)	173, 177, 183, 270, 1113, 1259, 1911, 2729, 3078
ZrmI	AGTACT	1 cut(s)	2683
Zsp2I	ATGCAT	3 cut(s)	1683, 2110, 2694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.