Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519431.1

Orthogroup ID

OG0002358

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 5390

Gene Structure 5390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggaggggttaaggcaactggaggccttgtgtgagaggttgtacaattcgcaggactcggttgagcgagcccacgccgaaaacactctcaaatgcttttctgtgaacattgaatacatttcgcaatgccagtacattcttgataatgccatgacgccgtatgctctgatgctagctagctctagtttgttgaagcaagtcactgatcatagccttgccttgcagcttcgtcttgatatccggagctaccttgtaaactatctggccactagaggacctgagttgcagccgtttgttactgcttccttaatccaactcttatgccgactcaccaagtttgggtggtttgatgatgacagattcaaggatgtcgttaaagagtccatgaacttcttgaaccaggcaacttctgatcactatgccattggtttgaagatattaaaccaacttgtgtctgagatgaatcagcctaatccagggttgccttcaacacatcatcgaagggttgcctgcaacttcagggatcagtctcttttccaaatattccagatctctttaacatcattgcgccaactggaaaacaatgttgaaagtcgtttgcgagagttggctctttctctttctcttaaatgtttatcgtttgattttgttgggacatcaattgatgaaagttcagaagaatttggtactgttcagatcccaacttcttggaggtcagttttggaggatccttcaacacttcaagtcttcttcgattactatgccattacaaaggcccctctgtcaaaggaggcactggagtgcttggtgcgattggcttctgttagacgatctttgtttacaaacgatgctgctcgttccaagtttttggcccatttgatgacaggaaccaaagaaatcctacaaacagggcaaggtcttgctgatcatgataattaccatgagtattgccgtcttcttggacgtttccgagttaattatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0019899 GO:0031267 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051020 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N

Protein Analysis

328

Amino Acids

37.55

Weight (kDa)

6.09

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120 AT5G06120
fragaria_vesca	FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530 FvH4_7g04530
malus_domestica	MD02G1207800.v1.1 MD07G1118000.v1.1
prunus_persica	Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G050900_v2.0.a1 Prupe.2G051400_v2.0.a1
pyrus_communis	pycom02g17010 pycom07g10620
rosa_chinensis	RchiOBHm_Chr1g0329811
rosa_laevigata	RLG00000029862
rosa_multiflora	Rmu_co8519431.1_g000001 Rmu_sc0003459.1_g000016
rosa_roxburghii	Rroxscaffold_4G00320670
rosa_rugosa	Rorug01G0083100 Rorug01G0083200 Rorug01G0083300 Rorug01G0083400
rosa_samantha	Rh1AG101400 Rh1BG080600 Rh1CG097100 Rh1DG104700
rosa_wichuraiana	Rw1G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	240
AclWI	GGATC	4 cut(s)	531, 691, 722, 735
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	44, 134, 688
AfiI	CCNNNNNNNGG	2 cut(s)	339, 476
AgsI	TTSAA	9 cut(s)	113, 193, 364, 397, 433, 489, 590, 735, 743
AjnI	CCWGG	2 cut(s)	399, 475
AleI	CACNNNNGTG	1 cut(s)	799
AluBI	AGCT	4 cut(s)	176, 180, 226, 246
AluI	AGCT	4 cut(s)	176, 180, 226, 246
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	4 cut(s)	531, 691, 722, 735
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	4 cut(s)	24, 264, 774, 870
ApeKI	GCWGC	3 cut(s)	223, 286, 851
ApoI	RAATTY	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	3 cut(s)	275, 775, 871
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	2 cut(s)	172, 176
AvaII	GGWCC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	727
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	2 cut(s)	739, 947
BbvI	GCAGC	3 cut(s)	235, 298, 838
BceAI	ACGGC	3 cut(s)	142, 274, 936
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	2 cut(s)	401, 477
BclI	TGATCA	3 cut(s)	205, 412, 925
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	4 cut(s)	173, 177, 183, 270
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	3 cut(s)	224, 287, 852
BlsI	GCNGC	3 cut(s)	225, 288, 853
Bme1390I	CCNGG	2 cut(s)	401, 477
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	275, 775, 871
BmiI	GGNNCC	3 cut(s)	729, 777, 889
BmrFI	CCNGG	2 cut(s)	401, 477
BmsI	GCATC	2 cut(s)	159, 838
BmtI	GCTAGC	2 cut(s)	176, 180
BpiI	GAAGAC	2 cut(s)	739, 947
BpmI	CTGGAG	2 cut(s)	41, 818
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 476
Bse1I	ACTGG	4 cut(s)	24, 130, 579, 801
Bse3DI	GCAATG	2 cut(s)	131, 563
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	401, 477
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	339, 476
BseMI	GCAATG	2 cut(s)	131, 563
BseMII	CTCAG	2 cut(s)	270, 447
BseNI	ACTGG	4 cut(s)	24, 130, 579, 801
BseXI	GCAGC	3 cut(s)	235, 298, 838
BshFI	GGCC	4 cut(s)	26, 266, 776, 872
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	339, 476
BsmAI	GTCTC	1 cut(s)	534
BsmFI	GGGAC	1 cut(s)	667
BsnI	GGCC	4 cut(s)	26, 266, 776, 872
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
BspANI	GGCC	4 cut(s)	26, 266, 776, 872
BspCNI	CTCAG	2 cut(s)	271, 448
BspEI	TCCGGA	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	3 cut(s)	729, 777, 889
BspOI	GCTAGC	2 cut(s)	176, 180
BspPI	GGATC	4 cut(s)	531, 691, 722, 735
BsrDI	GCAATG	2 cut(s)	131, 563
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	4 cut(s)	24, 130, 579, 801
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	401, 477
Bst4CI	ACNGT	1 cut(s)	691
BstACI	GRCGYC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	4 cut(s)	69, 174, 178, 511
BstDEI	CTNAG	2 cut(s)	279, 456
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	8 cut(s)	208, 415, 526, 552, 699, 730, 833, 928
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
BstNI	CCWGG	2 cut(s)	401, 477
BstSCI	CCNGG	2 cut(s)	399, 475
BstV1I	GCAGC	3 cut(s)	235, 298, 838
BstV2I	GAAGAC	2 cut(s)	739, 947
BstX2I	RGATCY	3 cut(s)	549, 696, 727
BstXI	CCANNNNNNTGG	2 cut(s)	708, 868
BstYI	RGATCY	3 cut(s)	549, 696, 727
BsuRI	GGCC	4 cut(s)	26, 266, 776, 872
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	201, 794
Cac8I	GCNNGC	4 cut(s)	69, 174, 178, 511
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	3 cut(s)	275, 775, 871
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	43, 133, 687
CviAII	CATG	4 cut(s)	151, 385, 929, 941
CviQI	GTAC	3 cut(s)	43, 133, 687
DdeI	CTNAG	2 cut(s)	279, 456
DpnI	GATC	8 cut(s)	207, 414, 525, 551, 698, 729, 832, 927
DpnII	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
EaeI	YGGCCR	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	275, 775
EcoRII	CCWGG	2 cut(s)	399, 475
EcoRV	GATATC	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	4 cut(s)	154, 388, 932, 944
FaiI	YATR	9 cut(s)	152, 162, 210, 322, 386, 420, 762, 930, 942
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	4 cut(s)	150, 384, 928, 940
FbaI	TGATCA	3 cut(s)	205, 412, 925
Fnu4HI	GCNGC	3 cut(s)	224, 287, 852
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	224, 287, 852
FspBI	CTAG	4 cut(s)	173, 177, 183, 270
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	3 cut(s)	224, 287, 852
GsuI	CTGGAG	2 cut(s)	41, 818
HaeIII	GGCC	4 cut(s)	26, 266, 776, 872
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	570
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	154, 388, 932, 944
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HinfI	GANTC	5 cut(s)	56, 327, 360, 380, 463
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	106, 256, 840
Hpy188I	TCNGA	6 cut(s)	168, 412, 457, 676, 696, 971
Hpy188III	TCNNGA	6 cut(s)	140, 233, 241, 394, 547, 929
Hpy8I	GTNNAC	3 cut(s)	106, 256, 840
HpyAV	CCTTC	3 cut(s)	495, 495, 741
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	3 cut(s)	223, 286, 513
HpyF3I	CTNAG	2 cut(s)	279, 456
HpySE526I	ACGT	1 cut(s)	964
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	154, 388, 932, 944
HspAI	GCGC	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	240
Ksp22I	TGATCA	3 cut(s)	205, 412, 925
Kzo9I	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	3 cut(s)	235, 298, 838
LweI	GCATC	2 cut(s)	159, 838
MaeI	CTAG	4 cut(s)	173, 177, 183, 270
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	2 cut(s)	199, 295
MalI	GATC	8 cut(s)	207, 414, 525, 551, 698, 729, 832, 927
MboI	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
MboII	GAAGA	5 cut(s)	445, 689, 739, 742, 947
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	3 cut(s)	549, 696, 727
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	5 cut(s)	46, 660, 680, 934, 976
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	50, 321, 389
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	7 cut(s)	16, 30, 266, 705, 718, 784, 789
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	7 cut(s)	11, 308, 375, 440, 557, 627, 975
MslI	CAYNNNNRTG	1 cut(s)	799
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	401, 477
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	2 cut(s)	401, 477
NdeII	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
NheI	GCTAGC	2 cut(s)	172, 176
NlaIII	CATG	4 cut(s)	154, 388, 932, 944
NlaIV	GGNNCC	3 cut(s)	729, 777, 889
NmuCI	GTSAC	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	799
PagI	TCATGA	1 cut(s)	928
PceI	AGGCCT	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	360, 463
PkrI	GCNGC	3 cut(s)	225, 288, 853
PleI	GAGTC	3 cut(s)	50, 321, 388
PpsI	GAGTC	3 cut(s)	50, 321, 388
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	399, 475
PspGI	CCWGG	2 cut(s)	399, 475
PspN4I	GGNNCC	3 cut(s)	729, 777, 889
PspPI	GGNCC	3 cut(s)	275, 775, 871
PspPPI	RGGWCCY	1 cut(s)	275
PsrI	GAACNNNNNNTAC	2 cut(s)	98, 130
PsuI	RGATCY	3 cut(s)	549, 696, 727
RsaI	GTAC	3 cut(s)	44, 134, 688
RsaNI	GTAC	3 cut(s)	43, 133, 687
RseI	CAYNNNNRTG	1 cut(s)	799
SaqAI	TTAA	7 cut(s)	11, 308, 375, 440, 557, 627, 975
SatI	GCNGC	3 cut(s)	224, 287, 852
Sau3AI	GATC	8 cut(s)	205, 412, 523, 549, 696, 727, 830, 925
Sau96I	GGNCC	3 cut(s)	275, 775, 871
SchI	GAGTC	3 cut(s)	50, 321, 389
ScrFI	CCNGG	2 cut(s)	401, 477
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	2 cut(s)	159, 838
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	799
Sse9I	AATT	5 cut(s)	46, 660, 680, 934, 976
SseBI	AGGCCT	1 cut(s)	26
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	4 cut(s)	173, 177, 183, 270
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	399, 475
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	2 cut(s)	499, 753
TasI	AATT	5 cut(s)	46, 660, 680, 934, 976
TatI	WGTACW	2 cut(s)	42, 132
TfiI	GAWTC	2 cut(s)	360, 463
Tru1I	TTAA	7 cut(s)	11, 308, 375, 440, 557, 627, 975
Tru9I	TTAA	7 cut(s)	11, 308, 375, 440, 557, 627, 975
TscAI	CASTG	2 cut(s)	208, 801
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	223, 286, 851
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	401, 476, 681
TspRI	CASTG	2 cut(s)	208, 801
VpaK11BI	GGWCC	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	1 cut(s)	680
XspI	CTAG	4 cut(s)	173, 177, 183, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.