Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Reverse (-)

24166898 .. 24172710

Gene Structure 5813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGGGAGCGTGGATCGAGTCGATGATAGGACCTTTAGGGTTAATTTGACGGGCGATTCAGTCATCAAGTTGAGAGAGAGTGTGAGAGAGAAGCTTAAGGAGTTCATGGGGGATTACACCGACGACACTCTTGTGGAATATGTTATTGTCCTTCTAAAGAATGGCAGGGGCAAAGAAGAAGCAAAGAATGAGCTGAACGTGTTTTTGGGGGATGACAGTGATTCTTTTGTTTCTTGGTTGTGGGGTCATCTGGCTTCAAATTCGGATTTGTATCTGCAATCAGAGGATCCTGAGATGGAAGATGTGAGTAAAAGAAAAACCACATCAGGTGACCTTACAGGACAAAGTGATTTGTATCATTTGGGTTCTGAGCCAGAAAGGGAGAAGTTTAATAAGTCAACTAAAAGCCGGCACACTAGAGAATGGAAAGGGCTAACAAGGGATGCAGCTGAGCCCCCTCCTTTTCGAAGCTCTGAGATCGGAGATATTCATGTAAAAGAAAAAAGTCGTAGCAAAGTCAGTGATGCGATGTCTCCTTCACGGCAACCTGCAGCTCAAAGGAAAAGGATTCGGCCTGATGAGCGACACAATACAGAGAGGGAACCAGTTTCTGAAGTGAATATTGATGCCCCTCGACGGCTACTCCAATTTGCTATGCGTGATGCATTAACGACCTCAAGGCAATCCAATTCAGCAACTCAGCCCACGTTGAAGCGTCTTCGTTCTGTGGTATCTAAACCCACTGTTGACTCATCATGGGTTGATCGTCCTCGACGGATACAGTCTGTCGCCAGGGTGCCAAATCCCATGTCAACTGTAATGAAAGCTGTTGCAGAAGCTGCTGAAGATGTAACAAGAGTTAAACCTTCAGGGAGTGTGTTTGACCGACTAGGTCGTGGTATGGAGTTTTTTGAGACCAGTGTGGCTCTTGCACCATCCAGAGATGCTGCTACCGAGGATGTTGAATTTGAAGATGTCGTCCAACTTCGTGAGCAAAAACGATCGTCGTATCCGGCTAGAAGTGAATACAGTGGACAGTATGTAGGGAATGCTTTGTTAGAAAGTGAAACTGGTTTGGCTTCTGATTTTGTATCGGACAATGAAGGGTTTGATGACGTTAATGTTATGGGTCATATAGTTACTGATGTTTCTCAAACCGGGACATCTGGTGGAAGCAAGGGTGAAAATTCACTAATGGCGCGTTACAATGTGGCGAAGAATGTTGATCATGTTATGCAGCTATCCAGGAATAAAGATCACGGTCAACCTTTTGCAGCTGCGAATTCTTCTCATAAGATTGTGAATATATCAGTGAATGTCAATACTTGGAAAGCGCACCATTATCAGGAGCCAAGAGAAGTTGCTGGTGATGATTGGAAATCCCTACAGAATAGTGAGGCAGGGGTTGCGAAATCTGGTTTGCATGTGATGAAGGAGAACGGCAATCCTGTTGGAGCAAGTAATGGAAATGTAACACCTGCTGCAGATTCTCCTAAGATGCTTTCCTCTTCTGCTGGTCTATATGCCAGTGGACGCCCATTGGAGGATGCAGATTCTCGAACTATCTTTGTTAACAATGTCCACTTTGCTGCTACAAAAGATAGTCTTTCTCGACATTTCAACAAGTTTGGGGAAGTGCTAAAAGTAGTGATAGTTACTGATGCAGCAACTGGGCAGCCTAAAGGGTCAGCTTACGTAGAGTTCACACGGAGGGAGGCGGCAGACAATGCATTATCTCTGGATGGAACCTCTTTCATGTCACGGATCCTCAAGGTTGTAAAGAGGGGAGCTGCACATCAAGAAGCAGCTCCTGGCATGACGTGGCCAAGGGTTGCCCGGGGCACTCCATTTGCCACTGCCAGGTTTGGTTGGTCCCCATTCCAGAGAGGCATATCTGGGGCATATAGGCCTCGCCCCCTAATCAAACCTGGTGCCAGGAGCATGCAGTGGAAGCGTGATACTCAGGCCAGTCCAGGTGAGATGGGTGCTCCTGTCACTGCCACTGCTGTTCCTACACCAACAGCTCGCAGTCTTAACCTATGTTCGAACAGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

686

Amino Acids

75.43

Weight (kDa)

8.88

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1486
Acc36I	ACCTGC	2 cut(s)	556, 1486
AccB1I	GGYRCC	2 cut(s)	796, 1931
AccII	CGCG	1 cut(s)	1201
AciI	CCGC	1 cut(s)	1718
AclWI	GGATC	5 cut(s)	21, 281, 294, 1759, 1772
AcoI	YGGCCR	1 cut(s)	1823
AcsI	RAATTY	4 cut(s)	259, 965, 1186, 1282
AcuI	CTGAAG	3 cut(s)	633, 852, 864
AcyI	GRCGYC	1 cut(s)	1534
AfiI	CCNNNNNNNGG	4 cut(s)	636, 1345, 1543, 1860
AflII	CTTAAG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	5 cut(s)	258, 712, 965, 971, 1621
AjiI	CACGTC	1 cut(s)	1821
AjnI	CCWGG	7 cut(s)	791, 1244, 1810, 1859, 1927, 1934, 1972
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AleI	CACNNNNGTG	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	1990
Alw26I	GTCTC	2 cut(s)	537, 908
AlwI	GGATC	5 cut(s)	21, 281, 294, 1759, 1772
AlwNI	CAGNNNCTG	4 cut(s)	611, 839, 1670, 1811
Ama87I	CYCGRG	1 cut(s)	1836
AoxI	GGCC	4 cut(s)	572, 1823, 1907, 1965
ApoI	RAATTY	4 cut(s)	259, 965, 1186, 1282
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
AspLEI	GCGC	2 cut(s)	1201, 1336
AspS9I	GGNCC	2 cut(s)	30, 1872
AsuC2I	CCSGG	3 cut(s)	1159, 1837, 1838
AsuHPI	GGTGA	4 cut(s)	341, 1193, 1379, 1988
AsuII	TTCGAA	2 cut(s)	466, 2045
AvaI	CYCGRG	1 cut(s)	1836
AvaII	GGWCC	2 cut(s)	30, 1872
BaeGI	GKGCMC	1 cut(s)	1844
BalI	TGGCCA	1 cut(s)	1825
BamHI	GGATCC	2 cut(s)	286, 1764
BanI	GGYRCC	2 cut(s)	796, 1931
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	1990
BccI	CCATC	4 cut(s)	289, 943, 1736, 1975
BceAI	ACGGC	3 cut(s)	557, 653, 1456
BciT130I	CCWGG	7 cut(s)	793, 1246, 1812, 1861, 1929, 1936, 1974
BciVI	GTATCC	2 cut(s)	771, 1020
BclI	TGATCA	1 cut(s)	1225
BcnI	CCSGG	3 cut(s)	1159, 1837, 1838
BcoDI	GTCTC	2 cut(s)	537, 908
BfaI	CTAG	3 cut(s)	417, 890, 1017
BfmI	CTRYAG	3 cut(s)	549, 1385, 1482
BfrI	CTTAAG	1 cut(s)	95
BfuAI	ACCTGC	2 cut(s)	556, 1486
BfuI	GTATCC	2 cut(s)	771, 1020
BlpI	GCTNAGC	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	30, 1872
BmeT110I	CYCGRG	1 cut(s)	1836
BmgBI	CACGTC	1 cut(s)	1821
BmgT120I	GGNCC	2 cut(s)	30, 1872
BmiI	GGNNCC	8 cut(s)	288, 603, 798, 1350, 1747, 1766, 1874, 1933
BmrI	ACTGGG	1 cut(s)	1680
BmsI	GCATC	8 cut(s)	433, 514, 616, 652, 934, 1488, 1537, 1651
BmuI	ACTGGG	1 cut(s)	1680
BpiI	GAAGAC	1 cut(s)	710
Bpu1102I	GCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	2 cut(s)	466, 2045
BpuEI	CTTGAG	2 cut(s)	661, 1754
BpuMI	CCSGG	3 cut(s)	1159, 1837, 1838
BsaAI	YACGTR	1 cut(s)	1696
BsaBI	GATNNNNATC	2 cut(s)	270, 354
BsaHI	GRCGYC	1 cut(s)	1534
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	5 cut(s)	792, 954, 1826, 1836, 1837
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	4 cut(s)	636, 1345, 1543, 1860
Bse118I	RCCGGY	1 cut(s)	408
Bse1I	ACTGG	6 cut(s)	605, 918, 1075, 1527, 1675, 1968
Bse8I	GATNNNNATC	2 cut(s)	270, 354
BseBI	CCWGG	7 cut(s)	793, 1246, 1812, 1861, 1929, 1936, 1974
BseDI	CCNNGG	5 cut(s)	792, 954, 1826, 1836, 1837
BseGI	GGATG	6 cut(s)	217, 448, 935, 964, 1552, 1747
BseJI	GATNNNNATC	2 cut(s)	270, 354
BseLI	CCNNNNNNNGG	4 cut(s)	636, 1345, 1543, 1860
BseMII	CTCAG	6 cut(s)	282, 360, 441, 465, 713, 1976
BseNI	ACTGG	6 cut(s)	605, 918, 1075, 1527, 1675, 1968
BseSI	GKGCMC	1 cut(s)	1844
BsgI	GTGCAG	1 cut(s)	1776
Bsh1236I	CGCG	1 cut(s)	1201
Bsh1285I	CGRYCG	1 cut(s)	1004
BshFI	GGCC	4 cut(s)	574, 1825, 1909, 1967
BshNI	GGYRCC	2 cut(s)	796, 1931
BsiEI	CGRYCG	1 cut(s)	1004
BsiHKAI	GWGCWC	1 cut(s)	1990
BsiHKCI	CYCGRG	1 cut(s)	1836
BsiSI	CCGG	4 cut(s)	409, 1013, 1158, 1837
BslFI	GGGAC	2 cut(s)	1174, 1858
BslI	CCNNNNNNNGG	4 cut(s)	636, 1345, 1543, 1860
BsmAI	GTCTC	2 cut(s)	537, 908
BsmFI	GGGAC	2 cut(s)	1174, 1858
BsmI	GAATGC	1 cut(s)	1054
BsnI	GGCC	4 cut(s)	574, 1825, 1909, 1967
Bso31I	GGTCTC	1 cut(s)	908
BsoBI	CYCGRG	1 cut(s)	1836
Bsp119I	TTCGAA	2 cut(s)	466, 2045
Bsp1286I	GDGCHC	3 cut(s)	456, 1844, 1990
Bsp143I	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
Bsp1720I	GCTNAGC	1 cut(s)	450
BspACI	CCGC	1 cut(s)	1718
BspANI	GGCC	4 cut(s)	574, 1825, 1909, 1967
BspCNI	CTCAG	6 cut(s)	283, 361, 442, 466, 712, 1975
BspFNI	CGCG	1 cut(s)	1201
BspLI	GGNNCC	8 cut(s)	288, 603, 798, 1350, 1747, 1766, 1874, 1933
BspMAI	CTGCAG	2 cut(s)	553, 1486
BspMI	ACCTGC	2 cut(s)	556, 1486
BspPI	GGATC	5 cut(s)	21, 281, 294, 1759, 1772
BspT104I	TTCGAA	2 cut(s)	466, 2045
BspT107I	GGYRCC	2 cut(s)	796, 1931
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	908
BsrFI	RCCGGY	1 cut(s)	408
BsrI	ACTGG	6 cut(s)	605, 918, 1075, 1527, 1675, 1968
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	5 cut(s)	792, 954, 1826, 1836, 1837
BssMI	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
BssNI	GRCGYC	1 cut(s)	1534
BssT1I	CCWWGG	1 cut(s)	1826
Bst2UI	CCWGG	7 cut(s)	793, 1246, 1812, 1861, 1929, 1936, 1974
Bst4CI	ACNGT	7 cut(s)	218, 745, 783, 817, 1031, 1038, 1262
Bst6I	CTCTTC	1 cut(s)	1513
BstACI	GRCGYC	1 cut(s)	1534
BstAFI	CTTAAG	1 cut(s)	95
BstAPI	GCANNNNNTGC	3 cut(s)	839, 1406, 1727
BstBAI	YACGTR	1 cut(s)	1696
BstBI	TTCGAA	2 cut(s)	466, 2045
BstC8I	GCNNGC	3 cut(s)	410, 1943, 2026
BstDEI	CTNAG	7 cut(s)	291, 369, 450, 474, 699, 1494, 1962
BstEII	GGTNACC	1 cut(s)	329
BstF5I	GGATG	6 cut(s)	217, 448, 935, 964, 1552, 1747
BstFNI	CGCG	1 cut(s)	1201
BstHHI	GCGC	2 cut(s)	1201, 1336
BstKTI	GATC	8 cut(s)	16, 289, 480, 766, 1004, 1228, 1258, 1767
BstMAI	GTCTC	2 cut(s)	537, 908
BstMBI	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
BstMCI	CGRYCG	1 cut(s)	1004
BstMWI	GCNNNNNNNGC	5 cut(s)	580, 839, 1406, 1727, 1951
BstNI	CCWGG	7 cut(s)	793, 1246, 1812, 1861, 1929, 1936, 1974
BstNSI	RCATGY	2 cut(s)	1427, 1945
BstPI	GGTNACC	1 cut(s)	329
BstSFI	CTRYAG	3 cut(s)	549, 1385, 1482
BstSLI	GKGCMC	1 cut(s)	1844
BstSNI	TACGTA	1 cut(s)	1696
BstUI	CGCG	1 cut(s)	1201
BstV2I	GAAGAC	1 cut(s)	710
BstX2I	RGATCY	2 cut(s)	286, 1764
BstYI	RGATCY	2 cut(s)	286, 1764
BsuI	GTATCC	2 cut(s)	771, 1020
BsuRI	GGCC	4 cut(s)	574, 1825, 1909, 1967
BtgZI	GCGATG	1 cut(s)	542
BtrI	CACGTC	1 cut(s)	1821
BtsCI	GGATG	6 cut(s)	217, 448, 935, 964, 1552, 1747
BtsI	GCAGTG	4 cut(s)	1854, 1952, 1995, 2001
BveI	ACCTGC	2 cut(s)	556, 1486
Cac8I	GCNNGC	3 cut(s)	410, 1943, 2026
CaiI	CAGNNNCTG	4 cut(s)	611, 839, 1670, 1811
CfoI	GCGC	2 cut(s)	1201, 1336
Cfr10I	RCCGGY	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	30, 1872
Cfr9I	CCCGGG	1 cut(s)	1836
CseI	GACGC	2 cut(s)	704, 1542
CsiI	ACCWGGT	1 cut(s)	1927
CviAII	CATG	9 cut(s)	106, 491, 756, 808, 1229, 1424, 1756, 1816, 1942
DdeI	CTNAG	7 cut(s)	291, 369, 450, 474, 699, 1494, 1962
DpnI	GATC	8 cut(s)	15, 288, 479, 765, 1003, 1227, 1257, 1766
DpnII	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
EaeI	YGGCCR	1 cut(s)	1823
Eam1104I	CTCTTC	1 cut(s)	1513
EarI	CTCTTC	1 cut(s)	1513
Eco105I	TACGTA	1 cut(s)	1696
Eco130I	CCWWGG	1 cut(s)	1826
Eco147I	AGGCCT	1 cut(s)	1909
Eco24I	GRGCYC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	908
Eco47I	GGWCC	2 cut(s)	30, 1872
Eco57I	CTGAAG	3 cut(s)	633, 852, 864
Eco88I	CYCGRG	1 cut(s)	1836
Eco91I	GGTNACC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	1282
EcoRII	CCWGG	7 cut(s)	791, 1244, 1810, 1859, 1927, 1934, 1972
EcoT14I	CCWWGG	1 cut(s)	1826
EcoT22I	ATGCAT	2 cut(s)	667, 1732
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	1826
FaeI	CATG	9 cut(s)	109, 494, 759, 811, 1232, 1427, 1759, 1819, 1945
FalI	AAGNNNNNCTT	2 cut(s)	1590, 1622
FaqI	GGGAC	2 cut(s)	1174, 1858
FatI	CATG	9 cut(s)	105, 490, 755, 807, 1228, 1423, 1755, 1815, 1941
FbaI	TGATCA	1 cut(s)	1225
FokI	GGATG	6 cut(s)	224, 455, 922, 971, 1559, 1754
FriOI	GRGCYC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	417, 890, 1017
GlaI	GCGC	2 cut(s)	1200, 1335
HaeIII	GGCC	4 cut(s)	574, 1825, 1909, 1967
HapII	CCGG	4 cut(s)	409, 1013, 1158, 1837
HgaI	GACGC	2 cut(s)	704, 1542
HhaI	GCGC	2 cut(s)	1201, 1336
Hin1I	GRCGYC	1 cut(s)	1534
Hin1II	CATG	9 cut(s)	109, 494, 759, 811, 1232, 1427, 1759, 1819, 1945
Hin6I	GCGC	2 cut(s)	1199, 1334
HinP1I	GCGC	2 cut(s)	1199, 1334
HincII	GTYRAC	5 cut(s)	399, 748, 813, 1265, 1573
HindII	GTYRAC	5 cut(s)	399, 748, 813, 1265, 1573
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	7 cut(s)	18, 56, 221, 568, 749, 1487, 1553
HpaI	GTTAAC	1 cut(s)	1573
HpaII	CCGG	4 cut(s)	409, 1013, 1158, 1837
HphI	GGTGA	4 cut(s)	341, 1193, 1379, 1988
Hpy166II	GTNNAC	9 cut(s)	399, 748, 813, 1034, 1265, 1532, 1573, 1582, 1704
Hpy188I	TCNGA	8 cut(s)	265, 283, 370, 475, 482, 613, 1084, 1096
Hpy188III	TCNNGA	9 cut(s)	290, 939, 989, 1346, 1557, 1611, 1739, 1799, 1882
Hpy8I	GTNNAC	9 cut(s)	399, 748, 813, 1034, 1265, 1532, 1573, 1582, 1704
Hpy99I	CGWCG	4 cut(s)	125, 639, 777, 1009
HpyAV	CCTTC	5 cut(s)	161, 546, 876, 1097, 1426
HpyCH4III	ACNGT	7 cut(s)	218, 745, 783, 817, 1031, 1038, 1262
HpyCH4IV	ACGT	5 cut(s)	198, 707, 1116, 1695, 1820
HpyF10VI	GCNNNNNNNGC	5 cut(s)	580, 839, 1406, 1727, 1951
HpyF3I	CTNAG	7 cut(s)	291, 369, 450, 474, 699, 1494, 1962
HpySE526I	ACGT	5 cut(s)	198, 707, 1116, 1695, 1820
Hsp92I	GRCGYC	1 cut(s)	1534
Hsp92II	CATG	9 cut(s)	109, 494, 759, 811, 1232, 1427, 1759, 1819, 1945
HspAI	GCGC	2 cut(s)	1199, 1334
KroI	GCCGGC	1 cut(s)	408
KroNI	GCCGGC	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	1225
KspAI	GTTAAC	1 cut(s)	1573
Kzo9I	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
LmnI	GCTCC	7 cut(s)	6, 1348, 1454, 1787, 1813, 1938, 1993
LweI	GCATC	8 cut(s)	433, 514, 616, 652, 934, 1488, 1537, 1651
MabI	ACCWGGT	1 cut(s)	1927
MaeI	CTAG	3 cut(s)	417, 890, 1017
MaeII	ACGT	5 cut(s)	198, 707, 1116, 1695, 1820
MaeIII	GTNAC	8 cut(s)	329, 850, 1138, 1202, 1471, 1654, 1758, 1993
MalI	GATC	8 cut(s)	15, 288, 479, 765, 1003, 1227, 1257, 1766
MboI	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
MboII	GAAGA	8 cut(s)	188, 311, 710, 857, 983, 1228, 1278, 1500
MflI	RGATCY	2 cut(s)	286, 1764
MhlI	GDGCHC	3 cut(s)	456, 1844, 1990
MlsI	TGGCCA	1 cut(s)	1825
MluCI	AATT	7 cut(s)	43, 259, 647, 688, 965, 1186, 1282
MluNI	TGGCCA	1 cut(s)	1825
MlyI	GAGTC	2 cut(s)	27, 743
MmeI	TCCRAC	2 cut(s)	1006, 1432
Mox20I	TGGCCA	1 cut(s)	1825
Mph1103I	ATGCAT	2 cut(s)	667, 1732
MroNI	GCCGGC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	1825
MseI	TTAA	8 cut(s)	42, 96, 390, 668, 861, 1119, 1572, 2034
MslI	CAYNNNNRTG	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	1825
MspA1I	CMGCKG	2 cut(s)	449, 1277
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	4 cut(s)	409, 1013, 1158, 1837
Mva1269I	GAATGC	1 cut(s)	1054
MvaI	CCWGG	7 cut(s)	793, 1246, 1812, 1861, 1929, 1936, 1974
MvnI	CGCG	1 cut(s)	1201
MwoI	GCNNNNNNNGC	5 cut(s)	580, 839, 1406, 1727, 1951
NaeI	GCCGGC	1 cut(s)	410
NciI	CCSGG	3 cut(s)	1159, 1837, 1838
NdeII	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
NgoMIV	GCCGGC	1 cut(s)	408
NlaIII	CATG	9 cut(s)	109, 494, 759, 811, 1232, 1427, 1759, 1819, 1945
NlaIV	GGNNCC	8 cut(s)	288, 603, 798, 1350, 1747, 1766, 1874, 1933
NmuCI	GTSAC	3 cut(s)	329, 1758, 1993
NsiI	ATGCAT	2 cut(s)	667, 1732
NspI	RCATGY	2 cut(s)	1427, 1945
NspV	TTCGAA	2 cut(s)	466, 2045
OliI	CACNNNNGTG	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	1945
PaqCI	CACCTGC	1 cut(s)	1486
PceI	AGGCCT	1 cut(s)	1909
PctI	GAATGC	1 cut(s)	1054
PdiI	GCCGGC	1 cut(s)	410
PfeI	GAWTC	5 cut(s)	56, 221, 568, 1487, 1553
PflFI	GACNNNGTC	1 cut(s)	891
PfoI	TCCNGGA	1 cut(s)	1244
Ple19I	CGATCG	1 cut(s)	1004
PleI	GAGTC	2 cut(s)	26, 743
PpsI	GAGTC	2 cut(s)	26, 743
Ppu21I	YACGTR	1 cut(s)	1696
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	7 cut(s)	791, 1244, 1810, 1859, 1927, 1934, 1972
PspEI	GGTNACC	1 cut(s)	329
PspGI	CCWGG	7 cut(s)	791, 1244, 1810, 1859, 1927, 1934, 1972
PspN4I	GGNNCC	8 cut(s)	288, 603, 798, 1350, 1747, 1766, 1874, 1933
PspPI	GGNCC	2 cut(s)	30, 1872
PspPPI	RGGWCCY	1 cut(s)	30
PstI	CTGCAG	2 cut(s)	553, 1486
PstNI	CAGNNNCTG	4 cut(s)	611, 839, 1670, 1811
PsuI	RGATCY	2 cut(s)	286, 1764
PsyI	GACNNNGTC	1 cut(s)	891
PvuI	CGATCG	1 cut(s)	1004
PvuII	CAGCTG	2 cut(s)	449, 1277
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	8 cut(s)	42, 96, 390, 668, 861, 1119, 1572, 2034
Sau3AI	GATC	8 cut(s)	13, 286, 477, 763, 1001, 1225, 1255, 1764
Sau96I	GGNCC	2 cut(s)	30, 1872
SchI	GAGTC	2 cut(s)	27, 743
SduI	GDGCHC	3 cut(s)	456, 1844, 1990
SexAI	ACCWGGT	1 cut(s)	1927
SfaNI	GCATC	8 cut(s)	433, 514, 616, 652, 934, 1488, 1537, 1651
SfcI	CTRYAG	3 cut(s)	549, 1385, 1482
SfuI	TTCGAA	2 cut(s)	466, 2045
SinI	GGWCC	2 cut(s)	30, 1872
SmaI	CCCGGG	1 cut(s)	1838
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	3 cut(s)	95, 676, 1769
SmoI	CTYRAG	3 cut(s)	95, 676, 1769
SnaBI	TACGTA	1 cut(s)	1696
SphI	GCATGC	1 cut(s)	1945
Sse9I	AATT	7 cut(s)	43, 259, 647, 688, 965, 1186, 1282
SseBI	AGGCCT	1 cut(s)	1909
SsiI	CCGC	1 cut(s)	1718
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	3 cut(s)	417, 890, 1017
StuI	AGGCCT	1 cut(s)	1909
StyI	CCWWGG	1 cut(s)	1826
TaaI	ACNGT	7 cut(s)	218, 745, 783, 817, 1031, 1038, 1262
TaiI	ACGT	5 cut(s)	201, 710, 1119, 1698, 1823
TaqI	TCGA	8 cut(s)	16, 21, 466, 634, 772, 1558, 1612, 2045
TaqII	GACCGA	1 cut(s)	900
TasI	AATT	7 cut(s)	43, 259, 647, 688, 965, 1186, 1282
TauI	GCSGC	1 cut(s)	1721
TfiI	GAWTC	5 cut(s)	56, 221, 568, 1487, 1553
Tru1I	TTAA	8 cut(s)	42, 96, 390, 668, 861, 1119, 1572, 2034
Tru9I	TTAA	8 cut(s)	42, 96, 390, 668, 861, 1119, 1572, 2034
TseFI	GTSAC	3 cut(s)	329, 1758, 1993
Tsp45I	GTSAC	3 cut(s)	329, 1758, 1993
TspDTI	ATGAA	6 cut(s)	94, 479, 836, 1116, 1445, 1744
TspGWI	ACGGA	3 cut(s)	790, 1723, 1777
TspMI	CCCGGG	1 cut(s)	1836
Tth111I	GACNNNGTC	1 cut(s)	891
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	30, 1872
XapI	RAATTY	4 cut(s)	259, 965, 1186, 1282
XceI	RCATGY	2 cut(s)	1427, 1945
XmaI	CCCGGG	1 cut(s)	1836
XspI	CTAG	3 cut(s)	417, 890, 1017
Zsp2I	ATGCAT	2 cut(s)	667, 1732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.