Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8205378.1

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 592

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8205378.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 343 bp

atgcgaaaggaggcagcagacaatgcattatctctggatggcacctcctttatgtcacggatccttaaggtcgttaagaggagtgcagcccaccaagaagccgcagctcctgccatgacatggccacgcgtaacccgtggttcttcatttaccactgccaggttttctagggcaccattcccaagaggcatgacaggtggatataggcctcgcggcttaatcaaaccaggtgccaggagcatgcagtggaagcgggattctcaaaccactcctggtgaaagtggcactccagtgtctggcatggctgctccctcaccaacaggtcgtagtctcacctatgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

114

Amino Acids

12.26

Weight (kDa)

11.67

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	41, 172, 230
AccB7I	CCANNNNNTGG	2 cut(s)	120, 296
AccII	CGCG	2 cut(s)	129, 213
AciI	CCGC	3 cut(s)	102, 213, 253
AclWI	GGATC	2 cut(s)	55, 68
AcoI	YGGCCR	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	120, 159, 296
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	127
AjnI	CCWGG	4 cut(s)	158, 226, 233, 271
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	55, 68
AlwNI	CAGNNNCTG	2 cut(s)	110, 296
AoxI	GGCC	2 cut(s)	122, 206
ApeKI	GCWGC	4 cut(s)	14, 86, 104, 305
AsuHPI	GGTGA	3 cut(s)	287, 306, 325
BaeGI	GKGCMC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	60
BanI	GGYRCC	3 cut(s)	41, 172, 230
BbvI	GCAGC	4 cut(s)	26, 98, 116, 292
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	160, 228, 235, 273
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	6 cut(s)	15, 87, 102, 105, 214, 306
BlsI	GCNGC	6 cut(s)	16, 88, 103, 106, 215, 307
Bme1390I	CCNGG	4 cut(s)	160, 228, 235, 273
BmiI	GGNNCC	4 cut(s)	43, 62, 174, 232
BmrFI	CCNGG	4 cut(s)	160, 228, 235, 273
BpmI	CTGGAG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 159, 296
Bse1I	ACTGG	1 cut(s)	290
BseBI	CCWGG	4 cut(s)	160, 228, 235, 273
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	3 cut(s)	120, 159, 296
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	4 cut(s)	26, 98, 116, 292
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	2 cut(s)	129, 213
BshFI	GGCC	2 cut(s)	124, 208
BshNI	GGYRCC	3 cut(s)	41, 172, 230
BslI	CCNNNNNNNGG	3 cut(s)	120, 159, 296
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	124, 208
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	3 cut(s)	102, 213, 253
BspANI	GGCC	2 cut(s)	124, 208
BspFNI	CGCG	2 cut(s)	129, 213
BspLI	GGNNCC	4 cut(s)	43, 62, 174, 232
BspPI	GGATC	2 cut(s)	55, 68
BspT107I	GGYRCC	3 cut(s)	41, 172, 230
BspTI	CTTAAG	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	60
Bst2UI	CCWGG	4 cut(s)	160, 228, 235, 273
BstAFI	CTTAAG	1 cut(s)	65
BstAPI	GCANNNNNTGC	2 cut(s)	23, 110
BstC8I	GCNNGC	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	129, 213
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 110, 250
BstNI	CCWGG	4 cut(s)	160, 228, 235, 273
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	4 cut(s)	158, 226, 233, 271
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	2 cut(s)	129, 213
BstV1I	GCAGC	4 cut(s)	26, 98, 116, 292
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	124, 208
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	2 cut(s)	153, 251
BtsIMutI	CAGTG	3 cut(s)	153, 251, 297
Cac8I	GCNNGC	1 cut(s)	242
CaiI	CAGNNNCTG	2 cut(s)	110, 296
CsiI	ACCWGGT	1 cut(s)	226
CviAII	CATG	5 cut(s)	115, 120, 190, 241, 301
CviJI	RGCY	7 cut(s)	89, 101, 107, 124, 208, 216, 305
CviKI_1	RGCY	7 cut(s)	89, 101, 107, 124, 208, 216, 305
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	122
Eco147I	AGGCCT	1 cut(s)	208
EcoRII	CCWGG	4 cut(s)	158, 226, 233, 271
EcoT22I	ATGCAT	1 cut(s)	28
FaeI	CATG	5 cut(s)	118, 123, 193, 244, 304
FaiI	YATR	8 cut(s)	53, 116, 121, 191, 204, 242, 302, 339
FatI	CATG	5 cut(s)	114, 119, 189, 240, 300
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	6 cut(s)	15, 87, 102, 105, 214, 306
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	6 cut(s)	15, 87, 102, 105, 214, 306
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	6 cut(s)	15, 87, 102, 105, 214, 306
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	124, 208
Hin1II	CATG	5 cut(s)	118, 123, 193, 244, 304
HinfI	GANTC	1 cut(s)	257
HphI	GGTGA	3 cut(s)	287, 306, 325
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	26, 86, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 110, 250
Hsp92II	CATG	5 cut(s)	118, 123, 193, 244, 304
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	112, 237, 313
Lsp1109I	GCAGC	4 cut(s)	26, 98, 116, 292
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	54, 130
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	135
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	124
MluI	ACGCGT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	124
MnlI	CCTC	6 cut(s)	4, 55, 72, 179, 219, 322
Mox20I	TGGCCA	1 cut(s)	124
Mph1103I	ATGCAT	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	124
MseI	TTAA	3 cut(s)	66, 75, 218
MslI	CAYNNNNRTG	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	124
MspCI	CTTAAG	1 cut(s)	65
MspR9I	CCNGG	4 cut(s)	160, 228, 235, 273
MvaI	CCWGG	4 cut(s)	160, 228, 235, 273
MvnI	CGCG	2 cut(s)	129, 213
MwoI	GCNNNNNNNGC	3 cut(s)	23, 110, 250
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	5 cut(s)	118, 123, 193, 244, 304
NlaIV	GGNNCC	4 cut(s)	43, 62, 174, 232
NmuCI	GTSAC	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	257
PflMI	CCANNNNNTGG	2 cut(s)	120, 296
PkrI	GCNGC	6 cut(s)	16, 88, 103, 106, 215, 307
Psp6I	CCWGG	4 cut(s)	158, 226, 233, 271
PspGI	CCWGG	4 cut(s)	158, 226, 233, 271
PspN4I	GGNNCC	4 cut(s)	43, 62, 174, 232
PstNI	CAGNNNCTG	2 cut(s)	110, 296
PsuI	RGATCY	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	66, 75, 218
SatI	GCNGC	6 cut(s)	15, 87, 102, 105, 214, 306
Sau3AI	GATC	1 cut(s)	60
ScrFI	CCNGG	4 cut(s)	160, 228, 235, 273
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	8 cut(s)	47, 72, 109, 164, 199, 232, 325, 338
SexAI	ACCWGGT	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	244
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	102, 213, 253
SspMI	CTAG	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	4 cut(s)	158, 226, 233, 271
TauI	GCSGC	2 cut(s)	104, 216
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	3 cut(s)	66, 75, 218
Tru9I	TTAA	3 cut(s)	66, 75, 218
TscAI	CASTG	3 cut(s)	160, 251, 297
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	4 cut(s)	14, 86, 104, 305
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	3 cut(s)	160, 251, 297
Van91I	CCANNNNNTGG	2 cut(s)	120, 296
Vha464I	CTTAAG	1 cut(s)	65
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.