Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8101366.1

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 602

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8101366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

agggaagtagtttctcaagggaatattgatgccccgcgtcggctactccaatttgctgtccgtgatgcgctgacaacttcaaggcattccaattcagcaacagagcccaccttgaagcgtctccgttctgtcgtttctacgtccactggtgactcatcattggttgatcctcctcggcgacttcagtctgttgcgagagtgccaaattccatggcaacagtaatgaaagctgttgcagaggctgctgaagatgtaacaagagttaaatcttcaggaagcgtgtttgatcgacttggtcgtggcatggatgtctcagagacaagtgggccact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

111

Amino Acids

11.89

Weight (kDa)

10.65

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	37
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	3 cut(s)	167, 255, 267
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	81, 115
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw26I	GTCTC	3 cut(s)	125, 311, 316
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	125, 311, 316
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	326
BmsI	GCATC	2 cut(s)	19, 55
BoxI	GACNNNNGTC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	173, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	173, 210
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	3 cut(s)	125, 311, 316
BsmBI	CGTCTC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	166, 286
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	173, 210
BssMI	GATC	2 cut(s)	166, 286
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	313
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	169, 289
BstMAI	GTCTC	3 cut(s)	125, 311, 316
BstMBI	GATC	2 cut(s)	166, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstPAI	GACNNNNGTC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	2 cut(s)	26, 107
CviAII	CATG	2 cut(s)	211, 304
CviJI	RGCY	5 cut(s)	43, 106, 230, 242, 328
CviKI_1	RGCY	5 cut(s)	43, 106, 230, 242, 328
DdeI	CTNAG	1 cut(s)	313
DpnI	GATC	2 cut(s)	168, 288
DpnII	GATC	2 cut(s)	166, 286
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	108
Eco57I	CTGAAG	3 cut(s)	167, 255, 267
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	214, 307
FaiI	YATR	2 cut(s)	212, 305
FatI	CATG	2 cut(s)	210, 303
FauI	CCCGC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	328
HgaI	GACGC	2 cut(s)	26, 107
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	214, 307
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	152
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	313
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	214, 307
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	166, 286
LpnPI	CCDG	2 cut(s)	132, 258
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	19, 55
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	149, 253
MalI	GATC	2 cut(s)	168, 288
MboI	GATC	2 cut(s)	166, 286
MboII	GAAGA	2 cut(s)	260, 261
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	3 cut(s)	50, 91, 205
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	180, 183, 232
MseI	TTAA	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	85
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	166, 286
NlaIII	CATG	2 cut(s)	214, 307
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PctI	GAATGC	1 cut(s)	85
PflFI	GACNNNGTC	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	166, 286
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	3 cut(s)	113, 143, 232
SfaNI	GCATC	2 cut(s)	19, 55
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	3 cut(s)	50, 91, 205
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	289
TasI	AATT	3 cut(s)	50, 91, 205
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	2 cut(s)	50, 113
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.