Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004180.1

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Reverse (-)

186297 .. 194409

Gene Structure 8113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004180.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgagcggcagcattcaaaggtttggatctgtgaatttctctttcatgagggaagtagtttctcaagggaatattgatgccccgcgtcggctactccaatttgctgtccgtgatgcgctgacaacttcaaggcattccaattcagcaacagagcccaccttgaagcgtctccgttctgtcgtttctacgtccactggtgactcatcattggttgatcctcctcggcgacttcagtctgttgcgagagtgccaaattccatggcaacagtaatgaaagctgttgcagaggctgctgaagatgtaacaagagttaaatcttcaggaagcgtgtttgatcgacttggtcgtggcatggatgtctcagagacaagtgggccacttgcatcgtttagagaagctgctactgaggatgttgactatgaagaaattcatgaacacacgcgatcgacatatctgcaaagaagtcaatacagtgggcattatgttgggaacactatgttagatagtgaaactggcttgccttctgattctgtttcagacaatgaagggtttgatgatgtcaatgttaaggggcgtagagttgctgatgtttctcaaactgggacatctggtggtaacaacggtgataattcactgatggtgcagtacactgtagctaagaatggtgatgatctaaggcggatatcaacaaacaaagatcagggtcaacctactgcacctgcaaataattctcataagattgtgaacatatccgtgaatgtcaatacttggaaaccaccccattttcaggagccaagggaggtagctgagctggatgattggaaatctgtacaggatattgaagcaagcactccaaattctgatttgcttttaatgaaggagaacagcaaccctgtgccacttagtaatggaaatacatattttcagagcttggtgcacttcattgccattgtagctgcagaaatcaatattaatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

326

Amino Acids

35.62

Weight (kDa)

5.33

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	727
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	2 cut(s)	85, 442
AciI	CCGC	3 cut(s)	6, 83, 679
AclWI	GGATC	2 cut(s)	34, 209
AcsI	RAATTY	4 cut(s)	34, 253, 426, 856
AcuI	CTGAAG	3 cut(s)	215, 303, 315
AfaI	GTAC	2 cut(s)	647, 831
AfiI	CCNNNNNNNGG	2 cut(s)	87, 787
AgsI	TTSAA	4 cut(s)	17, 129, 163, 842
AluBI	AGCT	7 cut(s)	278, 398, 656, 806, 811, 930, 956
AluI	AGCT	7 cut(s)	278, 398, 656, 806, 811, 930, 956
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	3 cut(s)	173, 359, 364
Alw44I	GTGCAC	1 cut(s)	935
AlwI	GGATC	2 cut(s)	34, 209
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	374
ApaLI	GTGCAC	1 cut(s)	935
ApeKI	GCWGC	4 cut(s)	9, 290, 398, 956
ApoI	RAATTY	4 cut(s)	34, 253, 426, 856
AseI	ATTAAT	1 cut(s)	972
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	209, 635, 677
BaeGI	GKGCMC	1 cut(s)	939
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	4 cut(s)	21, 277, 385, 943
BccI	CCATC	1 cut(s)	631
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BcoDI	GTCTC	3 cut(s)	173, 359, 364
BfmI	CTRYAG	2 cut(s)	651, 957
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	5 cut(s)	7, 10, 291, 399, 957
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	5 cut(s)	8, 11, 292, 400, 958
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	792
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	3 cut(s)	67, 103, 392
BmuI	ACTGGG	1 cut(s)	609
BoxI	GACNNNNGTC	1 cut(s)	232
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	221, 258, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 787
Bse1I	ACTGG	3 cut(s)	199, 517, 604
Bse3DI	GCAATG	1 cut(s)	942
BseDI	CCNNGG	3 cut(s)	221, 258, 794
BseGI	GGATG	3 cut(s)	361, 415, 820
BseLI	CCNNNNNNNGG	2 cut(s)	87, 787
BseMI	GCAATG	1 cut(s)	942
BseMII	CTCAG	3 cut(s)	375, 396, 798
BseNI	ACTGG	3 cut(s)	199, 517, 604
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	939
BseXI	GCAGC	4 cut(s)	21, 277, 385, 943
BsgI	GTGCAG	2 cut(s)	662, 699
Bsh1236I	CGCG	2 cut(s)	85, 442
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	939
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	87, 787
BsmAI	GTCTC	3 cut(s)	173, 359, 364
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	616
BsmI	GAATGC	2 cut(s)	12, 133
BsnI	GGCC	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	156, 939
Bsp1407I	TGTACA	1 cut(s)	829
Bsp143I	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	6, 83, 679
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	3 cut(s)	374, 397, 799
BspFNI	CGCG	2 cut(s)	85, 442
BspHI	TCATGA	2 cut(s)	45, 430
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	961
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	2 cut(s)	34, 209
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	942
BsrGI	TGTACA	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	199, 517, 604
BssECI	CCNNGG	3 cut(s)	221, 258, 794
BssMI	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
BssT1I	CCWWGG	2 cut(s)	258, 794
Bst4CI	ACNGT	4 cut(s)	268, 473, 623, 652
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	829
BstC8I	GCNNGC	2 cut(s)	518, 847
BstDEI	CTNAG	6 cut(s)	361, 405, 657, 674, 807, 902
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	3 cut(s)	361, 415, 820
BstFNI	CGCG	2 cut(s)	85, 442
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	6 cut(s)	29, 217, 337, 446, 673, 700
BstMAI	GTCTC	3 cut(s)	173, 359, 364
BstMBI	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 953
BstPAI	GACNNNNGTC	1 cut(s)	232
BstSFI	CTRYAG	2 cut(s)	651, 957
BstSLI	GKGCMC	1 cut(s)	939
BstUI	CGCG	2 cut(s)	85, 442
BstV1I	GCAGC	4 cut(s)	21, 277, 385, 943
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	361, 415, 820
BtsIMutI	CAGTG	4 cut(s)	192, 478, 632, 648
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	518, 847
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	2 cut(s)	45, 430
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	2 cut(s)	74, 155
Csp6I	GTAC	2 cut(s)	646, 830
CviAII	CATG	4 cut(s)	46, 259, 352, 431
CviQI	GTAC	2 cut(s)	646, 830
DdeI	CTNAG	6 cut(s)	361, 405, 657, 674, 807, 902
DpnI	GATC	6 cut(s)	28, 216, 336, 445, 672, 699
DpnII	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
EciI	GGCGGA	1 cut(s)	694
Eco130I	CCWWGG	2 cut(s)	258, 794
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	684
Eco57I	CTGAAG	3 cut(s)	215, 303, 315
EcoRV	GATATC	1 cut(s)	684
EcoT14I	CCWWGG	2 cut(s)	258, 794
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	258, 794
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	49, 262, 355, 434
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	4 cut(s)	45, 258, 351, 430
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	7, 10, 291, 399, 957
FokI	GGATG	3 cut(s)	368, 422, 827
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	5 cut(s)	7, 10, 291, 399, 957
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	5 cut(s)	7, 10, 291, 399, 957
HaeIII	GGCC	1 cut(s)	376
HgaI	GACGC	2 cut(s)	74, 155
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	4 cut(s)	49, 262, 355, 434
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	2 cut(s)	415, 707
HindII	GTYRAC	2 cut(s)	415, 707
HinfI	GANTC	2 cut(s)	200, 527
HphI	GGTGA	3 cut(s)	209, 635, 677
Hpy166II	GTNNAC	6 cut(s)	192, 415, 648, 707, 745, 937
Hpy188I	TCNGA	5 cut(s)	364, 526, 538, 862, 927
Hpy188III	TCNNGA	4 cut(s)	46, 321, 431, 788
Hpy8I	GTNNAC	6 cut(s)	192, 415, 648, 707, 745, 937
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	531, 539, 871
HpyCH4III	ACNGT	4 cut(s)	268, 473, 623, 652
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	8 cut(s)	284, 383, 457, 643, 716, 722, 937, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 953
HpyF3I	CTNAG	6 cut(s)	361, 405, 657, 674, 807, 902
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	49, 262, 355, 434
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	4 cut(s)	21, 277, 385, 943
LweI	GCATC	3 cut(s)	67, 103, 392
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	3 cut(s)	197, 301, 614
MalI	GATC	6 cut(s)	28, 216, 336, 445, 672, 699
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
MboII	GAAGA	3 cut(s)	308, 309, 434
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	156, 939
MluCI	AATT	8 cut(s)	34, 98, 139, 253, 426, 628, 727, 856
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	6 cut(s)	42, 228, 231, 280, 400, 793
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	4 cut(s)	312, 567, 872, 972
MslI	CAYNNNNRTG	1 cut(s)	752
Mva1269I	GAATGC	2 cut(s)	12, 133
MvnI	CGCG	2 cut(s)	85, 442
MwoI	GCNNNNNNNGC	2 cut(s)	290, 953
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
NlaIII	CATG	4 cut(s)	49, 262, 355, 434
NlaIV	GGNNCC	1 cut(s)	792
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	197
PagI	TCATGA	2 cut(s)	45, 430
PaqCI	CACCTGC	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PctI	GAATGC	2 cut(s)	12, 133
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	527
PflFI	GACNNNGTC	1 cut(s)	342
PkrI	GCNGC	5 cut(s)	8, 11, 292, 400, 958
Ple19I	CGATCG	1 cut(s)	446
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PshAI	GACNNNNGTC	1 cut(s)	232
PshBI	ATTAAT	1 cut(s)	972
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	647, 831
RsaNI	GTAC	2 cut(s)	646, 830
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	312, 567, 872, 972
SatI	GCNGC	5 cut(s)	7, 10, 291, 399, 957
Sau3AI	GATC	6 cut(s)	26, 214, 334, 443, 670, 697
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	156, 939
SfaNI	GCATC	3 cut(s)	67, 103, 392
SfcI	CTRYAG	2 cut(s)	651, 957
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	8 cut(s)	34, 98, 139, 253, 426, 628, 727, 856
SsiI	CCGC	3 cut(s)	6, 83, 679
SspI	AATATT	2 cut(s)	73, 970
StyI	CCWWGG	2 cut(s)	258, 794
TaaI	ACNGT	4 cut(s)	268, 473, 623, 652
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	337, 446
TasI	AATT	8 cut(s)	34, 98, 139, 253, 426, 628, 727, 856
TatI	WGTACW	2 cut(s)	645, 829
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	4 cut(s)	312, 567, 872, 972
Tru9I	TTAA	4 cut(s)	312, 567, 872, 972
TscAI	CASTG	4 cut(s)	199, 478, 639, 655
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	4 cut(s)	9, 290, 398, 956
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	8 cut(s)	34, 287, 419, 435, 447, 558, 890, 931
TspGWI	ACGGA	3 cut(s)	98, 161, 742
TspRI	CASTG	4 cut(s)	199, 478, 639, 655
Tth111I	GACNNNGTC	1 cut(s)	342
VneI	GTGCAC	1 cut(s)	935
VspI	ATTAAT	1 cut(s)	972
XapI	RAATTY	4 cut(s)	34, 253, 426, 856
XmnI	GAANNNNTTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.