Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017414.1

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2801

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017414.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1132 bp

atgattgcattgcttggaccttttgacatgaaaattgttgtggcggtttttcacgtgggggcagttcctcagtgcatgatagtgggggtgggagttgcaggggggtttcactttattatgtacctcctgactaatggcttatacgctaactactgcaatgaacttaaacatgcacttgaaggtttgaagcgtgccctggacacacgcatttcttctattctagttcttatgctctgggagtatgtaattgtccttttaaagaatggcaggcgtaaagaagaagcgaagaatgagttgaatgtctttttaggggatgacagtgattcttttgtttcttggttgtgggatcatctggcttcaaataccgatttgcatgtacaacctcaggattcttatatggaagatgcaagtaaaaggaaatccttatcaggggacgaaacaggaaaaaatgattctcatcatttgggttctgcgccagacaaagttaagtctaacaaatcatctagaagccggcacaacagagaatggagaggactagcgagggatgcagctgaaccccctccttttctaagctctgagcttggaagtgttcacgtagaggaaaaaagtcacagcaaggtcagtcgtgccaaatctccttccctgcaacctgcagctcagaggaaaaggattcggcctgatgagcggcagcattcaaagagggaagtagtttctcaagggaatattgatgccccgcgtcggctactccaatttgctgtccgtgatgcgctgacaacttcaaggcattccaattcagcaacagagcccaccttgaagcgtctccgttctgtcgtttctacgtccactggtgacgcatcattggttgatcctcctcggcgacttcagtctgttgcgagagtgccaaattccatggcaacagtaatgaaagctgttgcagaggctgctgaagatgtaacaagagttaaatcttcaggaagcgtgtttgatcgacttggtcgtggcatggatgtctcagagacaagtgggccactcgcatcgtttagagaagctggtactgaggatgttgactatgaagaaattcatgaacacacgcgatcgacatatctgcaaagaagtcaatacagtgggcatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

377

Amino Acids

41.84

Weight (kDa)

8.91

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	685
AccII	CGCG	2 cut(s)	736, 1093
AciI	CCGC	3 cut(s)	44, 685, 734
AclWI	GGATC	2 cut(s)	354, 860
AcsI	RAATTY	2 cut(s)	904, 1077
AcuI	CTGAAG	3 cut(s)	866, 954, 966
AcvI	CACGTG	1 cut(s)	55
AfaI	GTAC	3 cut(s)	122, 378, 1054
AfiI	CCNNNNNNNGG	2 cut(s)	429, 738
AgsI	TTSAA	7 cut(s)	179, 187, 298, 360, 696, 780, 814
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	6 cut(s)	551, 573, 580, 656, 929, 1049
AluI	AGCT	6 cut(s)	551, 573, 580, 656, 929, 1049
Alw26I	GTCTC	3 cut(s)	824, 1010, 1015
AlwI	GGATC	2 cut(s)	354, 860
AlwNI	CAGNNNCTG	1 cut(s)	941
AoxI	GGCC	2 cut(s)	674, 1025
ApeKI	GCWGC	4 cut(s)	548, 653, 688, 941
ApoI	RAATTY	2 cut(s)	904, 1077
Asp700I	GAANNNNTTC	1 cut(s)	1077
AspLEI	GCGC	2 cut(s)	475, 769
AspS9I	GGNCC	2 cut(s)	17, 1025
AsuHPI	GGTGA	1 cut(s)	860
AvaII	GGWCC	1 cut(s)	17
AxyI	CCTNAGG	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	807
BbrPI	CACGTG	1 cut(s)	55
BbvI	GCAGC	4 cut(s)	560, 665, 700, 928
BcgI	CGANNNNNNTGC	2 cut(s)	1087, 1121
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	3 cut(s)	824, 1010, 1015
BfaI	CTAG	3 cut(s)	221, 504, 536
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	5 cut(s)	549, 654, 686, 689, 942
BlsI	GCNGC	5 cut(s)	550, 655, 687, 690, 943
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	17, 1025
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	6 cut(s)	394, 535, 718, 754, 863, 1043
BoxI	GACNNNNGTC	1 cut(s)	883
BpuEI	CTTGAG	1 cut(s)	699
BsaAI	YACGTR	2 cut(s)	55, 595
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	195, 872, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 738
Bse118I	RCCGGY	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	850
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	8, 163
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	195, 872, 909
BseGI	GGATG	4 cut(s)	319, 550, 1012, 1066
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	429, 738
BseMI	GCAATG	2 cut(s)	8, 163
BseMII	CTCAG	6 cut(s)	83, 398, 567, 671, 1026, 1047
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	1 cut(s)	861
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	4 cut(s)	560, 665, 700, 928
Bsh1236I	CGCG	2 cut(s)	736, 1093
Bsh1285I	CGRYCG	1 cut(s)	1097
BshFI	GGCC	2 cut(s)	676, 1027
BsiEI	CGRYCG	1 cut(s)	1097
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	429, 738
BsmAI	GTCTC	3 cut(s)	824, 1010, 1015
BsmBI	CGTCTC	1 cut(s)	824
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	2 cut(s)	691, 784
BsnI	GGCC	2 cut(s)	676, 1027
Bsp1286I	GDGCHC	2 cut(s)	196, 807
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	4 cut(s)	346, 865, 985, 1094
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	3 cut(s)	44, 685, 734
BspANI	GGCC	2 cut(s)	676, 1027
BspCNI	CTCAG	6 cut(s)	82, 397, 568, 670, 1025, 1048
BspFNI	CGCG	2 cut(s)	736, 1093
BspHI	TCATGA	1 cut(s)	1081
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	2 cut(s)	354, 860
BsrBI	CCGCTC	1 cut(s)	685
BsrDI	GCAATG	2 cut(s)	8, 163
BsrFI	RCCGGY	1 cut(s)	510
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	850
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	3 cut(s)	195, 872, 909
BssMI	GATC	4 cut(s)	346, 865, 985, 1094
BssT1I	CCWWGG	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	320, 919, 1124
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstAUI	TGTACA	1 cut(s)	376
BstBAI	YACGTR	2 cut(s)	55, 595
BstC8I	GCNNGC	3 cut(s)	192, 269, 512
BstDEI	CTNAG	7 cut(s)	69, 384, 569, 576, 657, 1012, 1056
BstDSI	CCRYGG	1 cut(s)	909
BstF5I	GGATG	4 cut(s)	319, 550, 1012, 1066
BstFNI	CGCG	2 cut(s)	736, 1093
BstHHI	GCGC	2 cut(s)	475, 769
BstKTI	GATC	4 cut(s)	349, 868, 988, 1097
BstMAI	GTCTC	3 cut(s)	824, 1010, 1015
BstMBI	GATC	4 cut(s)	346, 865, 985, 1094
BstMCI	CGRYCG	1 cut(s)	1097
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 682, 941
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	173, 377
BstPAI	GACNNNNGTC	1 cut(s)	883
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	2 cut(s)	736, 1093
BstV1I	GCAGC	4 cut(s)	560, 665, 700, 928
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	676, 1027
BtgI	CCRYGG	1 cut(s)	909
BtsCI	GGATG	4 cut(s)	319, 550, 1012, 1066
BtsIMutI	CAGTG	4 cut(s)	77, 325, 843, 1129
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	192, 269, 512
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	1081
CfoI	GCGC	2 cut(s)	475, 769
Cfr10I	RCCGGY	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	17, 1025
CseI	GACGC	3 cut(s)	725, 806, 860
Csp6I	GTAC	3 cut(s)	121, 377, 1053
CviAII	CATG	7 cut(s)	28, 76, 170, 374, 910, 1003, 1082
CviQI	GTAC	3 cut(s)	121, 377, 1053
DdeI	CTNAG	7 cut(s)	69, 384, 569, 576, 657, 1012, 1056
DpnI	GATC	4 cut(s)	348, 867, 987, 1096
DpnII	GATC	4 cut(s)	346, 865, 985, 1094
DraI	TTTAAA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	909
Eco24I	GRGCYC	1 cut(s)	807
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	3 cut(s)	866, 954, 966
Eco72I	CACGTG	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	909
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	909
Esp3I	CGTCTC	1 cut(s)	824
FaeI	CATG	7 cut(s)	31, 79, 173, 377, 913, 1006, 1085
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	7 cut(s)	27, 75, 169, 373, 909, 1002, 1081
FauI	CCCGC	1 cut(s)	741
Fnu4HI	GCNGC	5 cut(s)	549, 654, 686, 689, 942
FokI	GGATG	4 cut(s)	326, 557, 1019, 1073
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	5 cut(s)	549, 654, 686, 689, 942
FspBI	CTAG	3 cut(s)	221, 504, 536
GlaI	GCGC	2 cut(s)	474, 768
GluI	GCNGC	5 cut(s)	549, 654, 686, 689, 942
HaeIII	GGCC	2 cut(s)	676, 1027
HapII	CCGG	1 cut(s)	511
HgaI	GACGC	3 cut(s)	725, 806, 860
HhaI	GCGC	2 cut(s)	475, 769
Hin1II	CATG	7 cut(s)	31, 79, 173, 377, 913, 1006, 1085
Hin6I	GCGC	2 cut(s)	473, 767
HinP1I	GCGC	2 cut(s)	473, 767
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HinfI	GANTC	4 cut(s)	323, 389, 452, 670
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	3 cut(s)	592, 843, 1066
Hpy188I	TCNGA	3 cut(s)	577, 660, 1015
Hpy188III	TCNNGA	5 cut(s)	127, 386, 504, 972, 1082
Hpy8I	GTNNAC	3 cut(s)	592, 843, 1066
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	173, 648
HpyCH4III	ACNGT	3 cut(s)	320, 919, 1124
HpyCH4IV	ACGT	3 cut(s)	54, 594, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 682, 941
HpyF3I	CTNAG	7 cut(s)	69, 384, 569, 576, 657, 1012, 1056
HpySE526I	ACGT	3 cut(s)	54, 594, 839
Hsp92II	CATG	7 cut(s)	31, 79, 173, 377, 913, 1006, 1085
HspAI	GCGC	2 cut(s)	473, 767
KroI	GCCGGC	1 cut(s)	510
KroNI	GCCGGC	1 cut(s)	512
Kzo9I	GATC	4 cut(s)	346, 865, 985, 1094
Lsp1109I	GCAGC	4 cut(s)	560, 665, 700, 928
LweI	GCATC	6 cut(s)	394, 535, 718, 754, 863, 1043
MaeI	CTAG	3 cut(s)	221, 504, 536
MaeII	ACGT	3 cut(s)	54, 594, 839
MaeIII	GTNAC	3 cut(s)	608, 848, 952
MalI	GATC	4 cut(s)	348, 867, 987, 1096
MbiI	CCGCTC	1 cut(s)	685
MboI	GATC	4 cut(s)	346, 865, 985, 1094
MboII	GAAGA	7 cut(s)	204, 290, 298, 413, 959, 960, 1085
MhlI	GDGCHC	2 cut(s)	196, 807
MluCI	AATT	6 cut(s)	33, 246, 749, 790, 904, 1077
MroNI	GCCGGC	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	1077
MseI	TTAA	4 cut(s)	165, 257, 486, 963
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	2 cut(s)	691, 784
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	2 cut(s)	736, 1093
MwoI	GCNNNNNNNGC	3 cut(s)	545, 682, 941
NaeI	GCCGGC	1 cut(s)	512
NcoI	CCATGG	1 cut(s)	909
NdeII	GATC	4 cut(s)	346, 865, 985, 1094
NgoMIV	GCCGGC	1 cut(s)	510
NlaIII	CATG	7 cut(s)	31, 79, 173, 377, 913, 1006, 1085
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	2 cut(s)	608, 848
NspI	RCATGY	2 cut(s)	173, 377
PagI	TCATGA	1 cut(s)	1081
PcsI	WCGNNNNNNNCGW	1 cut(s)	994
PctI	GAATGC	2 cut(s)	691, 784
PdiI	GCCGGC	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	1077
PfeI	GAWTC	4 cut(s)	323, 389, 452, 670
PflFI	GACNNNGTC	1 cut(s)	993
PkrI	GCNGC	5 cut(s)	550, 655, 687, 690, 943
Ple19I	CGATCG	1 cut(s)	1097
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
Ppu21I	YACGTR	2 cut(s)	55, 595
PshAI	GACNNNNGTC	1 cut(s)	883
Psp6I	CCWGG	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	17, 1025
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	941
PsyI	GACNNNGTC	1 cut(s)	993
PvuI	CGATCG	1 cut(s)	1097
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	3 cut(s)	122, 378, 1054
RsaNI	GTAC	3 cut(s)	121, 377, 1053
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	165, 257, 486, 963
SatI	GCNGC	5 cut(s)	549, 654, 686, 689, 942
Sau3AI	GATC	4 cut(s)	346, 865, 985, 1094
Sau96I	GGNCC	2 cut(s)	17, 1025
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	196, 807
SfaNI	GCATC	6 cut(s)	394, 535, 718, 754, 863, 1043
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
Sse9I	AATT	6 cut(s)	33, 246, 749, 790, 904, 1077
SsiI	CCGC	3 cut(s)	44, 685, 734
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	3 cut(s)	221, 504, 536
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	3 cut(s)	320, 919, 1124
TaiI	ACGT	3 cut(s)	57, 597, 842
TaqI	TCGA	2 cut(s)	988, 1097
TasI	AATT	6 cut(s)	33, 246, 749, 790, 904, 1077
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	4 cut(s)	323, 389, 452, 670
Tru1I	TTAA	4 cut(s)	165, 257, 486, 963
Tru9I	TTAA	4 cut(s)	165, 257, 486, 963
TscAI	CASTG	4 cut(s)	77, 325, 850, 1129
TseFI	GTSAC	2 cut(s)	608, 848
TseI	GCWGC	4 cut(s)	548, 653, 688, 941
Tsp45I	GTSAC	2 cut(s)	608, 848
TspDTI	ATGAA	6 cut(s)	44, 174, 938, 1070, 1086, 1098
TspGWI	ACGGA	2 cut(s)	749, 812
TspRI	CASTG	4 cut(s)	77, 325, 850, 1129
Tth111I	GACNNNGTC	1 cut(s)	993
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	2 cut(s)	904, 1077
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	2 cut(s)	173, 377
XmnI	GAANNNNTTC	1 cut(s)	1077
XspI	CTAG	3 cut(s)	221, 504, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.