Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036535.1

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1031

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036535.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

tttttaacagatcgtgcaggtctatatgctgccggtcgtcctttggaggatgcagattcacgaactatctttgttagcaatgtccattttgctgctacgaaagatagtctttctagacattttaacaagtttggtgaagtgctaaaggtggtgatacttactgatgcagcaactggacaacctagagggtcggcttatgtagagttcatgcgaaaggaggcagcagacaatgcattatctctggatggcacctcctttatgtcacggatccttaaggtcgttaagaggagtgcagcccaccaagaagccgcagctcctgccatgacatggccacgcgtaacccgtggttcttcatttaccactgccaggttttctagggcaccattcccaagaggcatgacaggtggatataggcctcgcggcttaatcaaaccaggtgccaggagcatgcagtggaagcgggattctcaaaccactcctggtgaaagtggcactccagtgtctggcatggctgctccctcaccaacaggtcgtagtctcacctatgttcggacagaagctaagccagcgggcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

192

Amino Acids

20.71

Weight (kDa)

10.74

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	8
AccB1I	GGYRCC	3 cut(s)	248, 379, 437
AccB7I	CCANNNNNTGG	2 cut(s)	327, 503
AccII	CGCG	2 cut(s)	336, 420
AciI	CCGC	4 cut(s)	309, 420, 460, 569
AclWI	GGATC	2 cut(s)	262, 275
AcoI	YGGCCR	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	327, 366, 503, 549
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	334
AjnI	CCWGG	4 cut(s)	365, 433, 440, 478
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	2 cut(s)	314, 560
AluI	AGCT	2 cut(s)	314, 560
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	262, 275
AlwNI	CAGNNNCTG	3 cut(s)	173, 317, 503
AoxI	GGCC	2 cut(s)	329, 413
ApeKI	GCWGC	7 cut(s)	29, 92, 167, 221, 293, 311, 512
AsuHPI	GGTGA	5 cut(s)	146, 163, 494, 513, 532
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	267
BanI	GGYRCC	3 cut(s)	248, 379, 437
BbvI	GCAGC	7 cut(s)	16, 79, 179, 233, 305, 323, 499
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	4 cut(s)	367, 435, 442, 480
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	3 cut(s)	114, 183, 375
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	8
BisI	GCNGC	9 cut(s)	30, 93, 168, 222, 294, 309, 312, 421, 513
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	9 cut(s)	31, 94, 169, 223, 295, 310, 313, 422, 514
Bme1390I	CCNGG	4 cut(s)	367, 435, 442, 480
BmiI	GGNNCC	4 cut(s)	250, 269, 381, 439
BmrFI	CCNGG	4 cut(s)	367, 435, 442, 480
BmsI	GCATC	2 cut(s)	40, 154
BpmI	CTGGAG	1 cut(s)	480
Bpu1102I	GCTNAGC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	4 cut(s)	327, 366, 503, 549
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	178, 497
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	4 cut(s)	367, 435, 442, 480
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	55, 250
BseLI	CCNNNNNNNGG	4 cut(s)	327, 366, 503, 549
BseMI	GCAATG	1 cut(s)	85
BseNI	ACTGG	2 cut(s)	178, 497
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	7 cut(s)	16, 79, 179, 233, 305, 323, 499
BsgI	GTGCAG	2 cut(s)	36, 312
Bsh1236I	CGCG	2 cut(s)	336, 420
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	331, 415
BshNI	GGYRCC	3 cut(s)	248, 379, 437
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	4 cut(s)	327, 366, 503, 549
BsmAI	GTCTC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	331, 415
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	10, 267
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	4 cut(s)	309, 420, 460, 569
BspANI	GGCC	2 cut(s)	331, 415
BspFNI	CGCG	2 cut(s)	336, 420
BspLI	GGNNCC	4 cut(s)	250, 269, 381, 439
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	262, 275
BspT107I	GGYRCC	3 cut(s)	248, 379, 437
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	178, 497
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	10, 267
Bst2UI	CCWGG	4 cut(s)	367, 435, 442, 480
BstAFI	CTTAAG	1 cut(s)	272
BstAPI	GCANNNNNTGC	2 cut(s)	230, 317
BstC8I	GCNNGC	3 cut(s)	449, 567, 571
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	55, 250
BstFNI	CGCG	2 cut(s)	336, 420
BstKTI	GATC	2 cut(s)	13, 270
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	2 cut(s)	10, 267
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 317, 457, 566
BstNI	CCWGG	4 cut(s)	367, 435, 442, 480
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	4 cut(s)	365, 433, 440, 478
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	2 cut(s)	336, 420
BstV1I	GCAGC	7 cut(s)	16, 79, 179, 233, 305, 323, 499
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	331, 415
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	55, 250
BtsI	GCAGTG	2 cut(s)	360, 458
BtsIMutI	CAGTG	3 cut(s)	360, 458, 504
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	3 cut(s)	449, 567, 571
CaiI	CAGNNNCTG	3 cut(s)	173, 317, 503
Cfr10I	RCCGGY	1 cut(s)	32
CsiI	ACCWGGT	1 cut(s)	433
CviAII	CATG	6 cut(s)	208, 322, 327, 397, 448, 508
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	2 cut(s)	12, 269
DpnII	GATC	2 cut(s)	10, 267
EaeI	YGGCCR	1 cut(s)	329
Eco147I	AGGCCT	1 cut(s)	415
EcoRII	CCWGG	4 cut(s)	365, 433, 440, 478
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	6 cut(s)	211, 325, 330, 400, 451, 511
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	6 cut(s)	207, 321, 326, 396, 447, 507
FauI	CCCGC	2 cut(s)	453, 562
Fnu4HI	GCNGC	9 cut(s)	30, 93, 168, 222, 294, 309, 312, 421, 513
FokI	GGATG	2 cut(s)	62, 257
Fsp4HI	GCNGC	9 cut(s)	30, 93, 168, 222, 294, 309, 312, 421, 513
FspBI	CTAG	3 cut(s)	114, 183, 375
GluI	GCNGC	9 cut(s)	30, 93, 168, 222, 294, 309, 312, 421, 513
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	331, 415
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	6 cut(s)	211, 325, 330, 400, 451, 511
HinfI	GANTC	2 cut(s)	56, 464
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	5 cut(s)	146, 163, 494, 513, 532
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	3 cut(s)	60, 114, 242
HpyCH4V	TGCA	6 cut(s)	17, 53, 167, 233, 293, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 317, 457, 566
HpyF3I	CTNAG	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	211, 325, 330, 400, 451, 511
Kzo9I	GATC	2 cut(s)	10, 267
LmnI	GCTCC	3 cut(s)	319, 444, 520
Lsp1109I	GCAGC	7 cut(s)	16, 79, 179, 233, 305, 323, 499
LweI	GCATC	2 cut(s)	40, 154
MabI	ACCWGGT	1 cut(s)	433
MaeI	CTAG	3 cut(s)	114, 183, 375
MaeIII	GTNAC	2 cut(s)	261, 337
MalI	GATC	2 cut(s)	12, 269
MboI	GATC	2 cut(s)	10, 267
MboII	GAAGA	1 cut(s)	342
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	331
MluCI	AATT	1 cut(s)	574
MluI	ACGCGT	1 cut(s)	334
MluNI	TGGCCA	1 cut(s)	331
MnlI	CCTC	8 cut(s)	40, 179, 211, 262, 279, 386, 426, 529
Mox20I	TGGCCA	1 cut(s)	331
Mph1103I	ATGCAT	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	5 cut(s)	5, 123, 273, 282, 425
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	569
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	4 cut(s)	367, 435, 442, 480
MvaI	CCWGG	4 cut(s)	367, 435, 442, 480
MvnI	CGCG	2 cut(s)	336, 420
MwoI	GCNNNNNNNGC	4 cut(s)	230, 317, 457, 566
NdeII	GATC	2 cut(s)	10, 267
NlaIII	CATG	6 cut(s)	211, 325, 330, 400, 451, 511
NlaIV	GGNNCC	4 cut(s)	250, 269, 381, 439
NmuCI	GTSAC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	56, 464
PflMI	CCANNNNNTGG	2 cut(s)	327, 503
PkrI	GCNGC	9 cut(s)	31, 94, 169, 223, 295, 310, 313, 422, 514
Psp6I	CCWGG	4 cut(s)	365, 433, 440, 478
PspGI	CCWGG	4 cut(s)	365, 433, 440, 478
PspN4I	GGNNCC	4 cut(s)	250, 269, 381, 439
PstNI	CAGNNNCTG	3 cut(s)	173, 317, 503
PsuI	RGATCY	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	5 cut(s)	5, 123, 273, 282, 425
SatI	GCNGC	9 cut(s)	30, 93, 168, 222, 294, 309, 312, 421, 513
Sau3AI	GATC	2 cut(s)	10, 267
ScrFI	CCNGG	4 cut(s)	367, 435, 442, 480
SduI	GDGCHC	1 cut(s)	382
SexAI	ACCWGGT	1 cut(s)	433
SfaNI	GCATC	2 cut(s)	40, 154
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	1 cut(s)	574
SseBI	AGGCCT	1 cut(s)	415
SsiI	CCGC	4 cut(s)	309, 420, 460, 569
SspMI	CTAG	3 cut(s)	114, 183, 375
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	4 cut(s)	365, 433, 440, 478
TasI	AATT	1 cut(s)	574
TauI	GCSGC	2 cut(s)	311, 423
TfiI	GAWTC	2 cut(s)	56, 464
Tru1I	TTAA	5 cut(s)	5, 123, 273, 282, 425
Tru9I	TTAA	5 cut(s)	5, 123, 273, 282, 425
TscAI	CASTG	3 cut(s)	367, 458, 504
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	7 cut(s)	29, 92, 167, 221, 293, 311, 512
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	196, 342
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	3 cut(s)	367, 458, 504
Van91I	CCANNNNNTGG	2 cut(s)	327, 503
Vha464I	CTTAAG	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	3 cut(s)	114, 183, 375
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.