Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Forward (+)

867223 .. 872480

Gene Structure 5258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGGGGAGCGTCGATCGAGTCGACGATCGGACCTTTAGGGTTAATTTGACCGGCGATTCAGTTATTAAGCTGAGGGACAGCGTCGGCGAGAAGCTTAAGGAGTTTATGGGGGATTACACCGATGACACTCTTGTGGAGTATGTAATTGTCCTTTTAAAGAATGGCAGGCGTAAAGAAGAAGCGAAGAATGAGTTGAATGTCTTTTTAGGGGATGACAGTGATTCTTTTGTTTCTTGGTTGTGGGATCATCTGGCTTCAAATACCGATTTGCATGTACAACCTCAGGATTCTTATATGGAAGATGCAAGTAAAAGGAAATCCTTATCAGGGGACGAAACAGGAAAAAATGATTCTCATCATTTGGGTTCTGCGCCAGACAAAGTTAAGTCTAACAAATCATCTAGAAGCCGGCACAACAGAGAATGGAGAGGACTAGCGAGGGATGCAGCTGAACCCCCTCCTTTTCTAAGCTCCGAGCTTGGAAGTGTTCACGTAGAGGAAAAAAGTCACAGCAAGGTCAGTCGTGCCAAATCTCCTTCCCTGCAACCTGCAGCTCAGAGGAAAAGGATTCGGCCTGATGAGCGGCAGCATTCAAAGAGGGAAGTAGTTTCTCAAGGGAATATTGATGCCCCGCGTCGGCTACTCCAATTTGCTGTACGTGATGCACTGACAACTTCAAGGCATTCCAATTCGGCAACAGAGCCCACCTTGAAGCGTCTCCGTTCTGTGGTTTCTACGTCCACTGGTGACTCATCATTGGTTGATCCTCCTCGGCGACTTCAGTCTGCTGCGAGAGTGCCAAATTCCATGGCAACAGTAATGAAAGCTGTTGCAGAGGCTGCTGAAGATGTAACAAGAGTTAAATCTTCAGGGAGCGTGTTTGATCGACTTGGTCGTGGTATGGATGTCTCAGAGACCAGTGGGCCACTTGCATCGTTTAGAGAAGCTGCTACTGAGGATGTTGACTATGAAGAAATTCATGAAAACACCCGATCGACATATCTGCAAAGAAGTCAATACAGTGGGCGGTATGTTCGGACCACTATGTTAGATGGTGAAACTGGCTTGCCTTCTGATTCTGTTTCAGACAATGAAGGGTTTGATGATGTCAATGTTAAGGGGCGTAGAGTCGCTGATGTTTCTCAAACTGAGACATCTGGTGGTAACAACGGTGACAATTCACTGATGGTGCAGTACAGTGTAGCTAAGAATGGTGATGATCTAAGGCGGATATCAACAAACAAAGATCAGGGTCAACCTACTGCACCTGCAAATAATTCTCATAAGATTGTGAACATATCCGTGAATGTCAATACTTGGAAACCACCCCATTTTCAGGAGCCAAGGGAGGTAGCTGAGCTGGACGATTGGAAATCTGTACAGGATATTGAAGCAAGCGCTCCAAATTCTGATTTGCTTTTAATGAAGGAGAACAGCAACCCTGTGCCAGTTAGTAATGGAAATGCAAATCCTGCCGCAGATTCTCAAAAGGTGCTTTCATCTTCTACTGATCGTGCAGGTCTATATGCTGCCGGTCGTCCTTTGGAGGATGCAGATTCACGAACTATCTTTGTTAGCAATGTCCATTTTGCTGCTACGAAAGATAGTCTTTCTAGACATTTTAACAAGTTTGGTGAAGTGCTAAAGGTGGTGATACTTACTGATGCAGCAACTGGACAACCTAGAGGGTCGGCTTATGTAGAGTTCATGCGAAAGGAGGCGGCAGACAATGCATTATCTCTGGATGGCACCTCCTTTATGTCACGGATCCTTAAGGTCGTTAAGAGGAGTGCAGCCCACCAAGAAGCCGCAGCTCCTGCCATGACATGGCCACGCGTAACCCGTGGTTCTTCATTTTCCACTGCCAGGTTTTCTAGGGCACCTTTCCCAAGAGGCATGACAGGTGGATATAGGCCTCGTGCCTTAATCAAACCAGGTGCCAGGAGCATGCAGTGGAAGCGGGATTCTCAAACCACTCCTGGTGAAAGTGGCACTCCAGTGTCTGGCATGGCTGCTCCCTCACCAACAGGTCGTAGTCTCACCTATGTTCGAACAGAAGCTAAGCCAGCGGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

692

Amino Acids

75.81

Weight (kDa)

8.95

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWI	PF01480	28 - 87	3.5e-07	PWI domain
RRM_1	PF00076	523 - 591	1.7e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1276
Acc36I	ACCTGC	3 cut(s)	556, 1276, 1508
AccB1I	GGYRCC	3 cut(s)	1748, 1879, 1937
AccB7I	CCANNNNNTGG	2 cut(s)	1827, 2003
AccBSI	CCGCTC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	2 cut(s)	634, 1836
AciI	CCGC	9 cut(s)	583, 632, 1027, 1228, 1476, 1721, 1809, 1960, 2069
AclWI	GGATC	4 cut(s)	252, 758, 1762, 1775
AcoI	YGGCCR	1 cut(s)	1829
AcsI	RAATTY	3 cut(s)	802, 975, 1405
AcuI	CTGAAG	3 cut(s)	764, 852, 864
AfaI	GTAC	4 cut(s)	276, 657, 1196, 1380
AfeI	AGCGCT	1 cut(s)	1399
AfiI	CCNNNNNNNGG	7 cut(s)	327, 636, 727, 1336, 1827, 1866, 2003
AflII	CTTAAG	2 cut(s)	95, 1772
AflIII	ACRYGT	1 cut(s)	1834
AgsI	TTSAA	6 cut(s)	196, 258, 594, 678, 712, 1391
AjnI	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
AleI	CACNNNNGTG	2 cut(s)	131, 1997
Alw26I	GTCTC	5 cut(s)	722, 908, 913, 1145, 2042
AlwI	GGATC	4 cut(s)	252, 758, 1762, 1775
AlwNI	CAGNNNCTG	4 cut(s)	839, 1673, 1817, 2003
Aor51HI	AGCGCT	1 cut(s)	1399
AoxI	GGCC	4 cut(s)	572, 923, 1829, 1913
ApoI	RAATTY	3 cut(s)	802, 975, 1405
Asp700I	GAANNNNTTC	1 cut(s)	975
AspLEI	GCGC	2 cut(s)	373, 1400
AspS9I	GGNCC	3 cut(s)	30, 923, 1038
AsuHPI	GGTGA	9 cut(s)	758, 1067, 1184, 1226, 1646, 1663, 1994, 2013, 2032
AsuII	TTCGAA	1 cut(s)	2050
AvaII	GGWCC	2 cut(s)	30, 1038
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	1882
BalI	TGGCCA	1 cut(s)	1831
BamHI	GGATCC	1 cut(s)	1767
BanI	GGYRCC	3 cut(s)	1748, 1879, 1937
BanII	GRGCYC	1 cut(s)	705
BauI	CACGAG	1 cut(s)	1917
BbvCI	CCTCAGC	1 cut(s)	71
BccI	CCATC	3 cut(s)	1046, 1180, 1739
BcgI	CGANNNNNNTGC	2 cut(s)	985, 1019
BciT130I	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
BcoDI	GTCTC	5 cut(s)	722, 908, 913, 1145, 2042
BfaI	CTAG	5 cut(s)	402, 434, 1614, 1683, 1875
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	1401
BfrI	CTTAAG	2 cut(s)	95, 1772
BfuAI	ACCTGC	3 cut(s)	556, 1276, 1508
BlpI	GCTNAGC	2 cut(s)	1356, 2061
Bme1390I	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
Bme18I	GGWCC	2 cut(s)	30, 1038
BmgT120I	GGNCC	3 cut(s)	30, 923, 1038
BmiI	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
BmrFI	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
BmsI	GCATC	7 cut(s)	292, 433, 616, 652, 941, 1540, 1654
BoxI	GACNNNNGTC	1 cut(s)	781
BpmI	CTGGAG	1 cut(s)	1980
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu1102I	GCTNAGC	2 cut(s)	1356, 2061
Bpu14I	TTCGAA	1 cut(s)	2050
BpuEI	CTTGAG	1 cut(s)	597
BsaAI	YACGTR	2 cut(s)	493, 659
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	4 cut(s)	770, 807, 1343, 1843
Bsc4I	CCNNNNNNNGG	7 cut(s)	327, 636, 727, 1336, 1827, 1866, 2003
Bse118I	RCCGGY	3 cut(s)	50, 408, 1532
Bse1I	ACTGG	6 cut(s)	748, 918, 1066, 1448, 1678, 1997
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	1585
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
BseDI	CCNNGG	4 cut(s)	770, 807, 1343, 1843
BseGI	GGATG	6 cut(s)	217, 448, 910, 964, 1555, 1750
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	7 cut(s)	327, 636, 727, 1336, 1827, 1866, 2003
BseMI	GCAATG	1 cut(s)	1585
BseMII	CTCAG	7 cut(s)	62, 296, 569, 924, 945, 1140, 1347
BseNI	ACTGG	6 cut(s)	748, 918, 1066, 1448, 1678, 1997
BseRI	GAGGAG	2 cut(s)	759, 1801
BseSI	GKGCMC	1 cut(s)	1882
BsgI	GTGCAG	4 cut(s)	1211, 1248, 1536, 1812
Bsh1236I	CGCG	2 cut(s)	634, 1836
Bsh1285I	CGRYCG	4 cut(s)	16, 28, 995, 1537
BshFI	GGCC	4 cut(s)	574, 925, 1831, 1915
BshNI	GGYRCC	3 cut(s)	1748, 1879, 1937
BsiEI	CGRYCG	4 cut(s)	16, 28, 995, 1537
BsiSI	CCGG	3 cut(s)	51, 409, 1533
BslFI	GGGAC	2 cut(s)	89, 344
BslI	CCNNNNNNNGG	7 cut(s)	327, 636, 727, 1336, 1827, 1866, 2003
BsmAI	GTCTC	5 cut(s)	722, 908, 913, 1145, 2042
BsmBI	CGTCTC	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	89, 344
BsmI	GAATGC	2 cut(s)	589, 682
BsnI	GGCC	4 cut(s)	574, 925, 1831, 1915
Bso31I	GGTCTC	1 cut(s)	908
Bsp119I	TTCGAA	1 cut(s)	2050
Bsp1286I	GDGCHC	2 cut(s)	705, 1882
Bsp1407I	TGTACA	2 cut(s)	274, 1378
Bsp1720I	GCTNAGC	2 cut(s)	1356, 2061
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	9 cut(s)	583, 632, 1027, 1228, 1476, 1721, 1809, 1960, 2069
BspANI	GGCC	4 cut(s)	574, 925, 1831, 1915
BspCNI	CTCAG	7 cut(s)	63, 295, 568, 923, 946, 1141, 1348
BspFNI	CGCG	2 cut(s)	634, 1836
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	3 cut(s)	556, 1276, 1508
BspPI	GGATC	4 cut(s)	252, 758, 1762, 1775
BspT104I	TTCGAA	1 cut(s)	2050
BspT107I	GGYRCC	3 cut(s)	1748, 1879, 1937
BspTI	CTTAAG	2 cut(s)	95, 1772
BspTNI	GGTCTC	1 cut(s)	908
BsrBI	CCGCTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	1585
BsrFI	RCCGGY	3 cut(s)	50, 408, 1532
BsrGI	TGTACA	2 cut(s)	274, 1378
BsrI	ACTGG	6 cut(s)	748, 918, 1066, 1448, 1678, 1997
BssAI	RCCGGY	3 cut(s)	50, 408, 1532
BssECI	CCNNGG	4 cut(s)	770, 807, 1343, 1843
BssSI	CACGAG	1 cut(s)	1917
BssT1I	CCWWGG	2 cut(s)	807, 1343
Bst2BI	CACGAG	1 cut(s)	1917
Bst2UI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
Bst4CI	ACNGT	5 cut(s)	218, 817, 1022, 1172, 1199
BstAFI	CTTAAG	2 cut(s)	95, 1772
BstAPI	GCANNNNNTGC	4 cut(s)	839, 1472, 1730, 1817
BstAUI	TGTACA	2 cut(s)	274, 1378
BstBAI	YACGTR	2 cut(s)	493, 659
BstBI	TTCGAA	1 cut(s)	2050
BstC8I	GCNNGC	7 cut(s)	167, 410, 1067, 1396, 1949, 2067, 2071
BstDSI	CCRYGG	2 cut(s)	807, 1843
BstF5I	GGATG	6 cut(s)	217, 448, 910, 964, 1555, 1750
BstFNI	CGCG	2 cut(s)	634, 1836
BstH2I	RGCGCY	1 cut(s)	1401
BstHHI	GCGC	2 cut(s)	373, 1400
BstMAI	GTCTC	5 cut(s)	722, 908, 913, 1145, 2042
BstMCI	CGRYCG	4 cut(s)	16, 28, 995, 1537
BstMWI	GCNNNNNNNGC	8 cut(s)	443, 580, 839, 1472, 1730, 1817, 1957, 2066
BstNI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
BstNSI	RCATGY	2 cut(s)	275, 1951
BstPAI	GACNNNNGTC	1 cut(s)	781
BstSCI	CCNGG	4 cut(s)	1865, 1933, 1940, 1978
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	1882
BstUI	CGCG	2 cut(s)	634, 1836
BstX2I	RGATCY	1 cut(s)	1767
BstYI	RGATCY	1 cut(s)	1767
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	574, 925, 1831, 1915
BtgI	CCRYGG	2 cut(s)	807, 1843
BtsCI	GGATG	6 cut(s)	217, 448, 910, 964, 1555, 1750
BtsI	GCAGTG	2 cut(s)	1860, 1958
BveI	ACCTGC	3 cut(s)	556, 1276, 1508
Cac8I	GCNNGC	7 cut(s)	167, 410, 1067, 1396, 1949, 2067, 2071
CaiI	CAGNNNCTG	4 cut(s)	839, 1673, 1817, 2003
CciI	TCATGA	1 cut(s)	979
CfoI	GCGC	2 cut(s)	373, 1400
Cfr10I	RCCGGY	3 cut(s)	50, 408, 1532
Cfr13I	GGNCC	3 cut(s)	30, 923, 1038
CseI	GACGC	3 cut(s)	70, 623, 704
CsiI	ACCWGGT	1 cut(s)	1933
Csp6I	GTAC	4 cut(s)	275, 656, 1195, 1379
CviAII	CATG	9 cut(s)	272, 808, 980, 1708, 1822, 1827, 1897, 1948, 2008
CviQI	GTAC	4 cut(s)	275, 656, 1195, 1379
DraI	TTTAAA	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	1829
EciI	GGCGGA	1 cut(s)	1243
Eco130I	CCWWGG	2 cut(s)	807, 1343
Eco147I	AGGCCT	1 cut(s)	1915
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	908
Eco32I	GATATC	1 cut(s)	1233
Eco47I	GGWCC	2 cut(s)	30, 1038
Eco47III	AGCGCT	1 cut(s)	1399
Eco57I	CTGAAG	3 cut(s)	764, 852, 864
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
EcoRV	GATATC	1 cut(s)	1233
EcoT14I	CCWWGG	2 cut(s)	807, 1343
EcoT22I	ATGCAT	1 cut(s)	1735
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	2 cut(s)	807, 1343
Esp3I	CGTCTC	1 cut(s)	722
FaeI	CATG	9 cut(s)	275, 811, 983, 1711, 1825, 1830, 1900, 1951, 2011
FalI	AAGNNNNNCTT	2 cut(s)	1593, 1625
FaqI	GGGAC	2 cut(s)	89, 344
FatI	CATG	9 cut(s)	271, 807, 979, 1707, 1821, 1826, 1896, 1947, 2007
FauI	CCCGC	3 cut(s)	639, 1953, 2062
FblI	GTMKAC	1 cut(s)	21
FokI	GGATG	6 cut(s)	224, 455, 917, 971, 1562, 1757
FriOI	GRGCYC	1 cut(s)	705
FspBI	CTAG	5 cut(s)	402, 434, 1614, 1683, 1875
GlaI	GCGC	2 cut(s)	372, 1399
GsuI	CTGGAG	1 cut(s)	1980
HaeII	RGCGCY	1 cut(s)	1401
HaeIII	GGCC	4 cut(s)	574, 925, 1831, 1915
HapII	CCGG	3 cut(s)	51, 409, 1533
HgaI	GACGC	3 cut(s)	70, 623, 704
HhaI	GCGC	2 cut(s)	373, 1400
Hin1II	CATG	9 cut(s)	275, 811, 983, 1711, 1825, 1830, 1900, 1951, 2011
Hin6I	GCGC	2 cut(s)	371, 1398
HinP1I	GCGC	2 cut(s)	371, 1398
HincII	GTYRAC	3 cut(s)	22, 964, 1256
HindII	GTYRAC	3 cut(s)	22, 964, 1256
HindIII	AAGCTT	1 cut(s)	92
HpaII	CCGG	3 cut(s)	51, 409, 1533
HphI	GGTGA	9 cut(s)	758, 1067, 1184, 1226, 1646, 1663, 1994, 2013, 2032
Hpy166II	GTNNAC	6 cut(s)	22, 490, 741, 964, 1256, 1294
Hpy188I	TCNGA	8 cut(s)	30, 475, 558, 913, 1038, 1075, 1087, 1411
Hpy188III	TCNNGA	7 cut(s)	284, 402, 980, 1337, 1560, 1614, 1742
Hpy8I	GTNNAC	6 cut(s)	22, 490, 741, 964, 1256, 1294
Hpy99I	CGWCG	4 cut(s)	14, 26, 86, 639
HpyAV	CCTTC	4 cut(s)	546, 1080, 1088, 1420
HpyCH4III	ACNGT	5 cut(s)	218, 817, 1022, 1172, 1199
HpyCH4IV	ACGT	3 cut(s)	492, 658, 737
HpyF10VI	GCNNNNNNNGC	8 cut(s)	443, 580, 839, 1472, 1730, 1817, 1957, 2066
HpySE526I	ACGT	3 cut(s)	492, 658, 737
Hsp92II	CATG	9 cut(s)	275, 811, 983, 1711, 1825, 1830, 1900, 1951, 2011
HspAI	GCGC	2 cut(s)	371, 1398
KroI	GCCGGC	1 cut(s)	408
KroNI	GCCGGC	1 cut(s)	410
LmnI	GCTCC	8 cut(s)	6, 476, 873, 1339, 1405, 1819, 1944, 2020
LweI	GCATC	7 cut(s)	292, 433, 616, 652, 941, 1540, 1654
MabI	ACCWGGT	1 cut(s)	1933
MaeI	CTAG	5 cut(s)	402, 434, 1614, 1683, 1875
MaeII	ACGT	3 cut(s)	492, 658, 737
MaeIII	GTNAC	7 cut(s)	506, 746, 850, 1163, 1172, 1761, 1837
MbiI	CCGCTC	1 cut(s)	583
MboII	GAAGA	8 cut(s)	188, 196, 311, 857, 858, 983, 1494, 1842
MflI	RGATCY	1 cut(s)	1767
MhlI	GDGCHC	2 cut(s)	705, 1882
MlsI	TGGCCA	1 cut(s)	1831
MluI	ACGCGT	1 cut(s)	1834
MluNI	TGGCCA	1 cut(s)	1831
MlyI	GAGTC	3 cut(s)	27, 743, 1137
Mox20I	TGGCCA	1 cut(s)	1831
Mph1103I	ATGCAT	1 cut(s)	1735
MroNI	GCCGGC	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	1831
MslI	CAYNNNNRTG	3 cut(s)	131, 1301, 1997
Msp20I	TGGCCA	1 cut(s)	1831
MspA1I	CMGCKG	2 cut(s)	449, 2069
MspCI	CTTAAG	2 cut(s)	95, 1772
MspI	CCGG	3 cut(s)	51, 409, 1533
MspR9I	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
Mva1269I	GAATGC	2 cut(s)	589, 682
MvaI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
MvnI	CGCG	2 cut(s)	634, 1836
MwoI	GCNNNNNNNGC	8 cut(s)	443, 580, 839, 1472, 1730, 1817, 1957, 2066
NaeI	GCCGGC	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	807
NgoMIV	GCCGGC	1 cut(s)	408
NlaIII	CATG	9 cut(s)	275, 811, 983, 1711, 1825, 1830, 1900, 1951, 2011
NlaIV	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	4 cut(s)	506, 746, 1172, 1761
NsiI	ATGCAT	1 cut(s)	1735
NspI	RCATGY	2 cut(s)	275, 1951
NspV	TTCGAA	1 cut(s)	2050
OliI	CACNNNNGTG	2 cut(s)	131, 1997
PaeI	GCATGC	1 cut(s)	1951
PagI	TCATGA	1 cut(s)	979
PaqCI	CACCTGC	1 cut(s)	1276
PceI	AGGCCT	1 cut(s)	1915
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 892, 1840
PctI	GAATGC	2 cut(s)	589, 682
PdiI	GCCGGC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	9 cut(s)	56, 221, 287, 350, 568, 1076, 1481, 1556, 1964
PflFI	GACNNNGTC	2 cut(s)	80, 891
PflMI	CCANNNNNTGG	2 cut(s)	1827, 2003
Ple19I	CGATCG	3 cut(s)	16, 28, 995
PleI	GAGTC	3 cut(s)	26, 743, 1136
PpsI	GAGTC	3 cut(s)	26, 743, 1136
Ppu21I	YACGTR	2 cut(s)	493, 659
PshAI	GACNNNNGTC	1 cut(s)	781
Psp6I	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
PspGI	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
PspN4I	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
PspPI	GGNCC	3 cut(s)	30, 923, 1038
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	4 cut(s)	839, 1673, 1817, 2003
PsuI	RGATCY	1 cut(s)	1767
PsyI	GACNNNGTC	2 cut(s)	80, 891
PvuI	CGATCG	3 cut(s)	16, 28, 995
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	4 cut(s)	276, 657, 1196, 1380
RsaNI	GTAC	4 cut(s)	275, 656, 1195, 1379
RseI	CAYNNNNRTG	3 cut(s)	131, 1301, 1997
SalI	GTCGAC	1 cut(s)	20
Sau96I	GGNCC	3 cut(s)	30, 923, 1038
SchI	GAGTC	3 cut(s)	27, 743, 1137
ScrFI	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
SduI	GDGCHC	2 cut(s)	705, 1882
SexAI	ACCWGGT	1 cut(s)	1933
SfaNI	GCATC	7 cut(s)	292, 433, 616, 652, 941, 1540, 1654
SfcI	CTRYAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	2050
SinI	GGWCC	2 cut(s)	30, 1038
SmiMI	CAYNNNNRTG	3 cut(s)	131, 1301, 1997
SmlI	CTYRAG	3 cut(s)	95, 612, 1772
SmoI	CTYRAG	3 cut(s)	95, 612, 1772
SphI	GCATGC	1 cut(s)	1951
SseBI	AGGCCT	1 cut(s)	1915
SsiI	CCGC	9 cut(s)	583, 632, 1027, 1228, 1476, 1721, 1809, 1960, 2069
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	5 cut(s)	402, 434, 1614, 1683, 1875
StuI	AGGCCT	1 cut(s)	1915
StyD4I	CCNGG	4 cut(s)	1865, 1933, 1940, 1978
StyI	CCWWGG	2 cut(s)	807, 1343
TaaI	ACNGT	5 cut(s)	218, 817, 1022, 1172, 1199
TaiI	ACGT	3 cut(s)	495, 661, 740
TaqI	TCGA	6 cut(s)	12, 16, 21, 886, 995, 2050
TatI	WGTACW	3 cut(s)	274, 1194, 1378
TauI	GCSGC	4 cut(s)	586, 1478, 1724, 1811
TfiI	GAWTC	9 cut(s)	56, 221, 287, 350, 568, 1076, 1481, 1556, 1964
TseFI	GTSAC	4 cut(s)	506, 746, 1172, 1761
Tsp45I	GTSAC	4 cut(s)	506, 746, 1172, 1761
TspDTI	ATGAA	9 cut(s)	836, 968, 984, 996, 1107, 1439, 1488, 1696, 1842
TspGWI	ACGGA	3 cut(s)	710, 1291, 1780
Tth111I	GACNNNGTC	2 cut(s)	80, 891
Van91I	CCANNNNNTGG	2 cut(s)	1827, 2003
Vha464I	CTTAAG	2 cut(s)	95, 1772
VpaK11BI	GGWCC	2 cut(s)	30, 1038
XapI	RAATTY	3 cut(s)	802, 975, 1405
XbaI	TCTAGA	2 cut(s)	401, 1613
XceI	RCATGY	2 cut(s)	275, 1951
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	5 cut(s)	402, 434, 1614, 1683, 1875
Zsp2I	ATGCAT	1 cut(s)	1735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.