Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Reverse (-)

65589231 .. 65595195

Gene Structure 5965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGGGGAGCGTCGATCGAGTCGACGATCGGACCTTTAGGGTTAATTTGACCGGCGATTCAGTTATTAAGCTGAGGGACAGCGTCGGCGAGAAGCTTAAGGAGTTTATGGGGGATTACACCGATGACACTCTTGTGGAGTATGTAATTGTCCTTTTAAAGAATGGCAGGCGTAAAGAAGAAGCGAAGAATGAGTTGAATGTCTTTTTAGGGGATGACAGTGATTCTTTTGTTTCTTGGTTGTGGGATCATCTGGCTTCAAATACCGATTTGCATGTACAACCTCAGGATTCATGTATGGAAGATGCAAGTAAAAGGAAATCCTTATCTGGGGACGAAACAGGAAAAAATGATTCTCATCATTTGGGTTCTGCGCCAGACAAAGTTAAGTCTAACAAATCATCCAGAAGCCGGCACAACAGAGAATGGAGAGGACTAGCGAGGGATGCAGCTGAACCCCCTCCTTTTCTAAGCTCTGAGCTTGGAACTGTTCACGTAGAGGAAAAAAGTCACAGCAAGGTCAGTCGTGCCAAATCTCCTTCCCTGCAACCTGCAGCTCAGAGGAAAAGGATTCGGCCTGATGAGCGGCAGCATTCAAAGAGGGAAGTAATTTCTCAAGGGAATATTGATGCCCCGCGTCGGCTACTCCAATTTGCTGTCCGTGATGCGCTGACAACTTCAAGGCATTCCAATTCAGCAACAGAGCCCACCTTGAAGCGTCTCCGTTCTGTCGTTTCTACGTCCACTGGTGACTCATCATTGGTTGATCCTCCTCGGCGACTTCAGTCTGTTGCGAGAGTGCCAAATTCCATGGCAACAGTAATGAAAGCTGTTGCAGAGGCTGCTGAAGATGTAACCAGAGTTAAATCTTCAGGAAGCGTGTTTGATCGACTTGGTCGTGGCATGGATGTCTCAGAGACGAGTGGGCCACTCGCATTGTTTAGAGAAGCTGCTACTGAGGATGTTGACTATGAAGAAATTCATGAACACACCCGATTGACATATCTGCAAAGAAGTCAATACAGTGGGCAGTATGTTGGGAACACTATGTTAGATAGTGAAACTGGCTTGCCTTCTGATTCTGTTTCAGACAATGAAGGGTTTGATGATGTCAATGTTAAGGGGCGTAGAGTCGCTGATGTTTCTCAAACTGGGACATCTGGTGGTAACAACGGTGACAATTCACTGATGGTGCAGTACAGTGTAGCTAAGAATGGTGATGATCTAAGGCGGATATCAACAAACAAAGATCAGGGTCAACCTACTGCACCTGCAAATAATTCTCACAAGATTGTGAACATATCCGTGAATGTCAATACTTGGAAACCACCCCATTTTCAGGAGCCAAGGGAGGTAGCTGAGCTGGACGATTGGAAATCTGTACAGGATATTGAAGCAAGCGCTCCAAATTCTGATTTGCTTTTAATGAAGGAGAACAGCAACCCTGTGCCAGTTAGTAATGGAAATGCAAATCCTGCCGCAGATTCTCAAAAGGTGCTTTCATCTTCTACTGATCGTGCAGGTCTATATGCTGCCGGTCGTCCTTTGGAGGATGCAGATTCACGAACTATCTTTGTTAGCAATGTCCATTTTGCTGCTACGAAAGATAGTCTTTCTAGACATTTTAACAAGTTTGGTGAAGTGCTAAAGGTGGTGATACTTACTGATGCAGCAACTGGACAACCTAGAGGGTCGGCTTATGTAGAGTTCATGCGAAAGGAGGCAGCAGACAATTCATTATCTCTGGATGGCACCTCCTTTATGTCACGGATCCTTAAGGTCGTTAAGAGGAGTGCAGCCCACCAAGAAGCCGCAGCTCCTGCCATGACATGGCCACGCGTAACCCGTAGTTCTTCATTTACCACTGCCAGGTTTTCTAGGGCACCATTCCCAAGAGGCATGACAGGTGGATATAGGCCTCGCGCCTTAATCAAACCAGGTGCCAGGAGCATGCAGTGGAAGCGGGATTCTCAAACCACTCCTGGTGAAAGTGGTACTCCAGTGTCTGGCATGGCTGCTCCCTCACCAACAGGTCGTAGTCTCACCTATGTTCGAACAGAAGCTAAGCCAGCAGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

692

Amino Acids

75.78

Weight (kDa)

8.77

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWI	PF01480	28 - 87	3.5e-07	PWI domain
RRM_1	PF00076	523 - 591	4.1e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1276
Acc36I	ACCTGC	3 cut(s)	556, 1276, 1508
AccB1I	GGYRCC	3 cut(s)	1748, 1879, 1937
AccB7I	CCANNNNNTGG	2 cut(s)	1827, 2003
AccBSI	CCGCTC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	3 cut(s)	634, 1836, 1920
AciI	CCGC	6 cut(s)	583, 632, 1228, 1476, 1809, 1960
AclWI	GGATC	4 cut(s)	252, 758, 1762, 1775
AcoI	YGGCCR	1 cut(s)	1829
AcsI	RAATTY	3 cut(s)	802, 975, 1405
AcuI	CTGAAG	3 cut(s)	764, 852, 864
AfaI	GTAC	4 cut(s)	276, 1196, 1380, 1993
AfeI	AGCGCT	1 cut(s)	1399
AfiI	CCNNNNNNNGG	7 cut(s)	327, 408, 636, 1336, 1827, 1866, 2003
AflII	CTTAAG	2 cut(s)	95, 1772
AflIII	ACRYGT	1 cut(s)	1834
AgsI	TTSAA	6 cut(s)	196, 258, 594, 678, 712, 1391
AjnI	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
AleI	CACNNNNGTG	1 cut(s)	131
Alw26I	GTCTC	4 cut(s)	722, 908, 913, 2042
AlwI	GGATC	4 cut(s)	252, 758, 1762, 1775
AlwNI	CAGNNNCTG	4 cut(s)	839, 1673, 1817, 2003
Aor51HI	AGCGCT	1 cut(s)	1399
AoxI	GGCC	4 cut(s)	572, 923, 1829, 1913
ApoI	RAATTY	3 cut(s)	802, 975, 1405
Asp700I	GAANNNNTTC	1 cut(s)	975
AspLEI	GCGC	4 cut(s)	373, 667, 1400, 1922
AspS9I	GGNCC	2 cut(s)	30, 923
AsuHPI	GGTGA	8 cut(s)	758, 1184, 1226, 1646, 1663, 1994, 2013, 2032
AsuII	TTCGAA	1 cut(s)	2050
AvaII	GGWCC	1 cut(s)	30
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	1882
BaeI	ACNNNNGTAYC	2 cut(s)	1983, 2016
BalI	TGGCCA	1 cut(s)	1831
BamHI	GGATCC	1 cut(s)	1767
BanI	GGYRCC	3 cut(s)	1748, 1879, 1937
BanII	GRGCYC	1 cut(s)	705
BbvCI	CCTCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	1180, 1739
BciT130I	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
BcoDI	GTCTC	4 cut(s)	722, 908, 913, 2042
BfaI	CTAG	4 cut(s)	434, 1614, 1683, 1875
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	1401
BfrI	CTTAAG	2 cut(s)	95, 1772
BfuAI	ACCTGC	3 cut(s)	556, 1276, 1508
BlpI	GCTNAGC	2 cut(s)	1356, 2061
Bme1390I	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	30, 923
BmiI	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
BmrFI	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
BmrI	ACTGGG	1 cut(s)	1158
BmsI	GCATC	6 cut(s)	292, 433, 616, 652, 1540, 1654
BmuI	ACTGGG	1 cut(s)	1158
BoxI	GACNNNNGTC	1 cut(s)	781
BpmI	CTGGAG	1 cut(s)	1980
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu1102I	GCTNAGC	2 cut(s)	1356, 2061
Bpu14I	TTCGAA	1 cut(s)	2050
BpuEI	CTTGAG	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	770, 807, 1343
Bsc4I	CCNNNNNNNGG	7 cut(s)	327, 408, 636, 1336, 1827, 1866, 2003
Bse118I	RCCGGY	3 cut(s)	50, 408, 1532
Bse1I	ACTGG	6 cut(s)	748, 1066, 1153, 1448, 1678, 1997
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	1585
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
BseDI	CCNNGG	3 cut(s)	770, 807, 1343
BseGI	GGATG	7 cut(s)	217, 398, 448, 910, 964, 1555, 1750
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	7 cut(s)	327, 408, 636, 1336, 1827, 1866, 2003
BseMI	GCAATG	1 cut(s)	1585
BseMII	CTCAG	7 cut(s)	62, 296, 465, 569, 924, 945, 1347
BseNI	ACTGG	6 cut(s)	748, 1066, 1153, 1448, 1678, 1997
BseRI	GAGGAG	2 cut(s)	759, 1801
BseSI	GKGCMC	1 cut(s)	1882
BsgI	GTGCAG	4 cut(s)	1211, 1248, 1536, 1812
Bsh1236I	CGCG	3 cut(s)	634, 1836, 1920
Bsh1285I	CGRYCG	3 cut(s)	16, 28, 1537
BshFI	GGCC	4 cut(s)	574, 925, 1831, 1915
BshNI	GGYRCC	3 cut(s)	1748, 1879, 1937
BsiEI	CGRYCG	3 cut(s)	16, 28, 1537
BsiSI	CCGG	3 cut(s)	51, 409, 1533
BslFI	GGGAC	3 cut(s)	89, 344, 1165
BslI	CCNNNNNNNGG	7 cut(s)	327, 408, 636, 1336, 1827, 1866, 2003
BsmAI	GTCTC	4 cut(s)	722, 908, 913, 2042
BsmBI	CGTCTC	2 cut(s)	722, 908
BsmFI	GGGAC	3 cut(s)	89, 344, 1165
BsmI	GAATGC	2 cut(s)	589, 682
BsnI	GGCC	4 cut(s)	574, 925, 1831, 1915
Bsp119I	TTCGAA	1 cut(s)	2050
Bsp1286I	GDGCHC	2 cut(s)	705, 1882
Bsp1407I	TGTACA	2 cut(s)	274, 1378
Bsp143I	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
Bsp1720I	GCTNAGC	2 cut(s)	1356, 2061
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	6 cut(s)	583, 632, 1228, 1476, 1809, 1960
BspANI	GGCC	4 cut(s)	574, 925, 1831, 1915
BspCNI	CTCAG	7 cut(s)	63, 295, 466, 568, 923, 946, 1348
BspFNI	CGCG	3 cut(s)	634, 1836, 1920
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	3 cut(s)	556, 1276, 1508
BspPI	GGATC	4 cut(s)	252, 758, 1762, 1775
BspT104I	TTCGAA	1 cut(s)	2050
BspT107I	GGYRCC	3 cut(s)	1748, 1879, 1937
BspTI	CTTAAG	2 cut(s)	95, 1772
BsrBI	CCGCTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	1585
BsrFI	RCCGGY	3 cut(s)	50, 408, 1532
BsrGI	TGTACA	2 cut(s)	274, 1378
BsrI	ACTGG	6 cut(s)	748, 1066, 1153, 1448, 1678, 1997
BssAI	RCCGGY	3 cut(s)	50, 408, 1532
BssECI	CCNNGG	3 cut(s)	770, 807, 1343
BssMI	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
BssT1I	CCWWGG	2 cut(s)	807, 1343
Bst2UI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
Bst4CI	ACNGT	6 cut(s)	218, 487, 817, 1022, 1172, 1199
BstAFI	CTTAAG	2 cut(s)	95, 1772
BstAPI	GCANNNNNTGC	3 cut(s)	839, 1472, 1817
BstAUI	TGTACA	2 cut(s)	274, 1378
BstBAI	YACGTR	1 cut(s)	493
BstBI	TTCGAA	1 cut(s)	2050
BstC8I	GCNNGC	7 cut(s)	167, 410, 1067, 1396, 1949, 2067, 2071
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	7 cut(s)	217, 398, 448, 910, 964, 1555, 1750
BstFNI	CGCG	3 cut(s)	634, 1836, 1920
BstH2I	RGCGCY	1 cut(s)	1401
BstHHI	GCGC	4 cut(s)	373, 667, 1400, 1922
BstKTI	GATC	9 cut(s)	16, 28, 247, 766, 886, 1222, 1249, 1513, 1770
BstMAI	GTCTC	4 cut(s)	722, 908, 913, 2042
BstMBI	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
BstMCI	CGRYCG	3 cut(s)	16, 28, 1537
BstMWI	GCNNNNNNNGC	7 cut(s)	443, 580, 839, 1472, 1817, 1957, 2066
BstNI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
BstNSI	RCATGY	2 cut(s)	275, 1951
BstPAI	GACNNNNGTC	1 cut(s)	781
BstSCI	CCNGG	4 cut(s)	1865, 1933, 1940, 1978
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	1882
BstUI	CGCG	3 cut(s)	634, 1836, 1920
BstX2I	RGATCY	1 cut(s)	1767
BstYI	RGATCY	1 cut(s)	1767
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	574, 925, 1831, 1915
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	7 cut(s)	217, 398, 448, 910, 964, 1555, 1750
BtsI	GCAGTG	2 cut(s)	1860, 1958
BtsIMutI	CAGTG	8 cut(s)	223, 741, 1027, 1181, 1204, 1860, 1958, 2004
BveI	ACCTGC	3 cut(s)	556, 1276, 1508
Cac8I	GCNNGC	7 cut(s)	167, 410, 1067, 1396, 1949, 2067, 2071
CaiI	CAGNNNCTG	4 cut(s)	839, 1673, 1817, 2003
CciI	TCATGA	1 cut(s)	979
CfoI	GCGC	4 cut(s)	373, 667, 1400, 1922
Cfr10I	RCCGGY	3 cut(s)	50, 408, 1532
Cfr13I	GGNCC	2 cut(s)	30, 923
CseI	GACGC	3 cut(s)	70, 623, 704
CsiI	ACCWGGT	1 cut(s)	1933
Csp6I	GTAC	4 cut(s)	275, 1195, 1379, 1992
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviQI	GTAC	4 cut(s)	275, 1195, 1379, 1992
DpnI	GATC	9 cut(s)	15, 27, 246, 765, 885, 1221, 1248, 1512, 1769
DpnII	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
DraI	TTTAAA	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	1829
EciI	GGCGGA	1 cut(s)	1243
Eco130I	CCWWGG	2 cut(s)	807, 1343
Eco147I	AGGCCT	1 cut(s)	1915
Eco24I	GRGCYC	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	1233
Eco47I	GGWCC	1 cut(s)	30
Eco47III	AGCGCT	1 cut(s)	1399
Eco57I	CTGAAG	3 cut(s)	764, 852, 864
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
EcoRV	GATATC	1 cut(s)	1233
EcoT14I	CCWWGG	2 cut(s)	807, 1343
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	2 cut(s)	807, 1343
Esp3I	CGTCTC	2 cut(s)	722, 908
FalI	AAGNNNNNCTT	2 cut(s)	1593, 1625
FaqI	GGGAC	3 cut(s)	89, 344, 1165
FauI	CCCGC	2 cut(s)	639, 1953
FblI	GTMKAC	1 cut(s)	21
FokI	GGATG	7 cut(s)	224, 385, 455, 917, 971, 1562, 1757
FriOI	GRGCYC	1 cut(s)	705
FspBI	CTAG	4 cut(s)	434, 1614, 1683, 1875
GlaI	GCGC	4 cut(s)	372, 666, 1399, 1921
GsuI	CTGGAG	1 cut(s)	1980
HaeII	RGCGCY	1 cut(s)	1401
HaeIII	GGCC	4 cut(s)	574, 925, 1831, 1915
HapII	CCGG	3 cut(s)	51, 409, 1533
HgaI	GACGC	3 cut(s)	70, 623, 704
HhaI	GCGC	4 cut(s)	373, 667, 1400, 1922
Hin6I	GCGC	4 cut(s)	371, 665, 1398, 1920
HinP1I	GCGC	4 cut(s)	371, 665, 1398, 1920
HincII	GTYRAC	3 cut(s)	22, 964, 1256
HindII	GTYRAC	3 cut(s)	22, 964, 1256
HindIII	AAGCTT	1 cut(s)	92
HpaII	CCGG	3 cut(s)	51, 409, 1533
HphI	GGTGA	8 cut(s)	758, 1184, 1226, 1646, 1663, 1994, 2013, 2032
Hpy166II	GTNNAC	6 cut(s)	22, 490, 741, 964, 1256, 1294
Hpy188I	TCNGA	7 cut(s)	30, 475, 558, 913, 1075, 1087, 1411
Hpy188III	TCNNGA	8 cut(s)	284, 402, 870, 980, 1337, 1560, 1614, 1742
Hpy8I	GTNNAC	6 cut(s)	22, 490, 741, 964, 1256, 1294
Hpy99I	CGWCG	4 cut(s)	14, 26, 86, 639
HpyAV	CCTTC	4 cut(s)	546, 1080, 1088, 1420
HpyCH4III	ACNGT	6 cut(s)	218, 487, 817, 1022, 1172, 1199
HpyCH4IV	ACGT	2 cut(s)	492, 737
HpyF10VI	GCNNNNNNNGC	7 cut(s)	443, 580, 839, 1472, 1817, 1957, 2066
HpySE526I	ACGT	2 cut(s)	492, 737
HspAI	GCGC	4 cut(s)	371, 665, 1398, 1920
KroI	GCCGGC	1 cut(s)	408
KroNI	GCCGGC	1 cut(s)	410
Kzo9I	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
LmnI	GCTCC	6 cut(s)	6, 1339, 1405, 1819, 1944, 2020
LweI	GCATC	6 cut(s)	292, 433, 616, 652, 1540, 1654
MabI	ACCWGGT	1 cut(s)	1933
MaeI	CTAG	4 cut(s)	434, 1614, 1683, 1875
MaeII	ACGT	2 cut(s)	492, 737
MaeIII	GTNAC	7 cut(s)	506, 746, 850, 1163, 1172, 1761, 1837
MalI	GATC	9 cut(s)	15, 27, 246, 765, 885, 1221, 1248, 1512, 1769
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
MboII	GAAGA	8 cut(s)	188, 196, 311, 857, 858, 983, 1494, 1842
MflI	RGATCY	1 cut(s)	1767
MhlI	GDGCHC	2 cut(s)	705, 1882
MlsI	TGGCCA	1 cut(s)	1831
MluI	ACGCGT	1 cut(s)	1834
MluNI	TGGCCA	1 cut(s)	1831
MlyI	GAGTC	3 cut(s)	27, 743, 1137
Mox20I	TGGCCA	1 cut(s)	1831
MroNI	GCCGGC	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	1831
MslI	CAYNNNNRTG	2 cut(s)	131, 1301
Msp20I	TGGCCA	1 cut(s)	1831
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	2 cut(s)	95, 1772
MspI	CCGG	3 cut(s)	51, 409, 1533
MspR9I	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
Mva1269I	GAATGC	2 cut(s)	589, 682
MvaI	CCWGG	4 cut(s)	1867, 1935, 1942, 1980
MvnI	CGCG	3 cut(s)	634, 1836, 1920
MwoI	GCNNNNNNNGC	7 cut(s)	443, 580, 839, 1472, 1817, 1957, 2066
NaeI	GCCGGC	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
NgoMIV	GCCGGC	1 cut(s)	408
NlaIV	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	4 cut(s)	506, 746, 1172, 1761
NspI	RCATGY	2 cut(s)	275, 1951
NspV	TTCGAA	1 cut(s)	2050
OliI	CACNNNNGTG	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	1951
PagI	TCATGA	1 cut(s)	979
PaqCI	CACCTGC	1 cut(s)	1276
PceI	AGGCCT	1 cut(s)	1915
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 892, 1840
PctI	GAATGC	2 cut(s)	589, 682
PdiI	GCCGGC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	9 cut(s)	56, 221, 287, 350, 568, 1076, 1481, 1556, 1964
PflFI	GACNNNGTC	2 cut(s)	80, 891
PflMI	CCANNNNNTGG	2 cut(s)	1827, 2003
Ple19I	CGATCG	2 cut(s)	16, 28
PleI	GAGTC	3 cut(s)	26, 743, 1136
PpsI	GAGTC	3 cut(s)	26, 743, 1136
Ppu21I	YACGTR	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	781
Psp6I	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
PspGI	CCWGG	4 cut(s)	1865, 1933, 1940, 1978
PspN4I	GGNNCC	5 cut(s)	1341, 1750, 1769, 1881, 1939
PspPI	GGNCC	2 cut(s)	30, 923
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	4 cut(s)	839, 1673, 1817, 2003
PsuI	RGATCY	1 cut(s)	1767
PsyI	GACNNNGTC	2 cut(s)	80, 891
PvuI	CGATCG	2 cut(s)	16, 28
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	4 cut(s)	276, 1196, 1380, 1993
RsaNI	GTAC	4 cut(s)	275, 1195, 1379, 1992
RseI	CAYNNNNRTG	2 cut(s)	131, 1301
SalI	GTCGAC	1 cut(s)	20
Sau3AI	GATC	9 cut(s)	13, 25, 244, 763, 883, 1219, 1246, 1510, 1767
Sau96I	GGNCC	2 cut(s)	30, 923
SchI	GAGTC	3 cut(s)	27, 743, 1137
ScrFI	CCNGG	4 cut(s)	1867, 1935, 1942, 1980
SduI	GDGCHC	2 cut(s)	705, 1882
SexAI	ACCWGGT	1 cut(s)	1933
SfaNI	GCATC	6 cut(s)	292, 433, 616, 652, 1540, 1654
SfcI	CTRYAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	2050
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	2 cut(s)	131, 1301
SmlI	CTYRAG	3 cut(s)	95, 612, 1772
SmoI	CTYRAG	3 cut(s)	95, 612, 1772
SphI	GCATGC	1 cut(s)	1951
SseBI	AGGCCT	1 cut(s)	1915
SsiI	CCGC	6 cut(s)	583, 632, 1228, 1476, 1809, 1960
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	4 cut(s)	434, 1614, 1683, 1875
StuI	AGGCCT	1 cut(s)	1915
StyD4I	CCNGG	4 cut(s)	1865, 1933, 1940, 1978
StyI	CCWWGG	2 cut(s)	807, 1343
TaaI	ACNGT	6 cut(s)	218, 487, 817, 1022, 1172, 1199
TaiI	ACGT	2 cut(s)	495, 740
TaqI	TCGA	5 cut(s)	12, 16, 21, 886, 2050
TatI	WGTACW	3 cut(s)	274, 1194, 1378
TauI	GCSGC	3 cut(s)	586, 1478, 1811
TfiI	GAWTC	9 cut(s)	56, 221, 287, 350, 568, 1076, 1481, 1556, 1964
TscAI	CASTG	8 cut(s)	223, 748, 1027, 1188, 1204, 1867, 1958, 2004
TseFI	GTSAC	4 cut(s)	506, 746, 1172, 1761
Tsp45I	GTSAC	4 cut(s)	506, 746, 1172, 1761
TspGWI	ACGGA	4 cut(s)	647, 710, 1291, 1780
TspRI	CASTG	8 cut(s)	223, 748, 1027, 1188, 1204, 1867, 1958, 2004
Tth111I	GACNNNGTC	2 cut(s)	80, 891
Van91I	CCANNNNNTGG	2 cut(s)	1827, 2003
Vha464I	CTTAAG	2 cut(s)	95, 1772
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	3 cut(s)	802, 975, 1405
XbaI	TCTAGA	1 cut(s)	1613
XceI	RCATGY	2 cut(s)	275, 1951
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	4 cut(s)	434, 1614, 1683, 1875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.