Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006139

Physical Location & Seq

Genomic Coordinates Forward (+)

2005781 .. 2009328

Gene Structure 3548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGGAAGATGCAAGTAAAAGGAAATCCTTATCAGGGGACGAAACAGGAAAAAATGATTCTCATCATTTGGGTTCTGCGCCAGACAAAGTTAAGTCTAACAAATCATCTAGAAGCCGGCACAACAGAGAATGGAGAGGACTAGCGAGGGATGCAGCTGAACCCCCTCCTTTTCTAAGCTCCGAGCTTGGAAGTGTTCACGTAGAGGAAAAAAGTCACAGCAAGGTCAGTCGTGCCAAATCTCCTTCCCTGCAACCTGCAGCTCAGAGGAAAAGGATTCGGCCTGATGAGCGGCAGCATTCAAAGAGGGAAGTAGTTTCTCAAGGGAATATTGATGCCCCGCGTCGGCTACTCCAATTTGCTGTACGTGATGCACTGACAACTTCAAGGCATTCCAATTCGGCAACAGAGCCCACCTTGAAGCGTCTCCGTTCTGTGGTTTCTACGTCCACTGGTGACTCATCATTGGTTGATCCTCCTCGGCGACTTCAGTCTGCTGCGAGAGTGCCAAATTCCATGGCAACAGTAATGAAAGCTGTTGCAGAGGCTGCTGAAGATGTAACAAGAGTTAAATCTTCAGGGAGCGTGTTTGATCGACTTGGTCGTGGTATGGATGTCTCAGAGACCAGTGGGCCACTTGCATCGTTTAGAGAAGCTGCTACTGAGGATGTTGACTATGAAGAAATTCATGAAAACACCCGATCGACATATCTGCAAAGAAGTCAATACAGTGGGCGGTATGTTCGGACCACTATGTTAGATGGTGAAACTGGCTTGCCTTCTGATTCTGTTTCAGACAATGAAGGGTTTGATGATGTCAATGTTAAGGGGCGTAGAGTCGCTGATGTTTCTCAAACTGAGACATCTGGTGGTAACAACGGTGACAATTCACTGATGGTGCAGTACAGTGTAGCTAAGAATGGTGATGATCTAAGGCGGATATCAACAAACAAAGATCAGGGTCAACCTACTGCACCTGCAAATAATTCTCATAAGATTGTGAACATATCCGTGAATGTCAATACTTGGAAACCACCCCATTTTCAGGAGCCAAGGGAGGTAGCTGAGCTGGACGATTGGAAATCTGTACAGGATATTGAAGCAAGCGCTCCAAATTCTGATTTGCTTTTAATGAAGGAGAACAGCAACCCTGTGCCAGTTAGTAATGGAAATGCAAATCCTGCCGCAGATTCTCAAAAGGTGCTTTCATCTTCTACTGATCGTGCAGGTCTATATGCTGCCGGTCGTCCTTTGGAGGATGCAGATTCACGAACTATCTTTGTTAGCAATGTCCATTTTGCTGCTACGAAAGATAGTCTTTCTAGACATTTTAACAAGTTTGGTGAAGTGCTAAAGGTGGTGATACTTACTGATGCAGCAACTGGACAACCTAGAGGGTCGGCTTATGTAGAGTTCATGCGAAAGGAGGCGGCAGACAATGCATTATCTCTGGATGGCACCTCCTTTATGTCACGGATCCTTAAGGTCGTTAAGAGGAGTGCAGCCCACCAAGAAGCCGCAGCTCCTGCCATGACATGGCCACGCGTAACCCGTGGTTCTTCATTTTCCACTGCCAGGTTTTCTAGGGCACCTTTCCCAAGAGGCATGACAGGTGGATATAGGCCTCGTGCCTTAATCAAACCAGGTGCCAGGAGCATGCAGTGGAAGCGGGATTCTCAAACCACTCCTGGTGAAAGTGGCACTCCAGTGTCTGGCATGGCTGCTCCCTCACCAACAGGTCGTAGTCTCACCTATGTTCGAACAGAAGCTAAGCCAGCGGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0002237 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016234 GO:0016310 GO:0019538 GO:0019899 GO:0023014 GO:0023052 GO:0032496 GO:0032991 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042405 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070063 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:1901564 GO:1901700 GO:1901701 GO:1904245 GO:1904247 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

594

Amino Acids

64.55

Weight (kDa)

9.62

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	425 - 493	1.4e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12640 AT3G12640 AT3G12640 AT3G12640
fragaria_vesca	FvH4_7g00830 FvH4_7g00830 FvH4_7g00830
malus_domestica	MD02G1314400.v1.1 MD07G1007800.v1.1
prunus_persica	Prupe.2G010500_v2.0.a1
pyrus_communis	pycom02g26360 pycom07g00640
rosa_chinensis	RchiOBHm_Chr1g0314991
rosa_laevigata	RLG00000030749
rosa_multiflora	Rmu_co8101366.1_g000001 Rmu_co8205378.1_g000001 Rmu_sc0004180.1_g000037 Rmu_sc0017414.1_g000001 Rmu_sc0023178.1_g000001 Rmu_sc0036535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331600
rosa_rugosa	Rorug01G0004200
rosa_samantha	Rh1AG014700 Rh1BG007100 Rh1CG013000 Rh1DG008500
rosa_wichuraiana	Rw1G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	982
Acc36I	ACCTGC	3 cut(s)	262, 982, 1214
AccB1I	GGYRCC	3 cut(s)	1454, 1585, 1643
AccB7I	CCANNNNNTGG	2 cut(s)	1533, 1709
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	2 cut(s)	340, 1542
AciI	CCGC	9 cut(s)	289, 338, 733, 934, 1182, 1427, 1515, 1666, 1775
AclWI	GGATC	3 cut(s)	464, 1468, 1481
AcoI	YGGCCR	1 cut(s)	1535
AcsI	RAATTY	3 cut(s)	508, 681, 1111
AcuI	CTGAAG	3 cut(s)	470, 558, 570
AfaI	GTAC	3 cut(s)	363, 902, 1086
AfeI	AGCGCT	1 cut(s)	1105
AfiI	CCNNNNNNNGG	7 cut(s)	33, 342, 433, 1042, 1533, 1572, 1709
AflII	CTTAAG	1 cut(s)	1478
AflIII	ACRYGT	1 cut(s)	1540
AgsI	TTSAA	4 cut(s)	300, 384, 418, 1097
AjnI	CCWGG	4 cut(s)	1571, 1639, 1646, 1684
AleI	CACNNNNGTG	1 cut(s)	1703
Alw26I	GTCTC	5 cut(s)	428, 614, 619, 851, 1748
AlwI	GGATC	3 cut(s)	464, 1468, 1481
AlwNI	CAGNNNCTG	4 cut(s)	545, 1379, 1523, 1709
Aor51HI	AGCGCT	1 cut(s)	1105
AoxI	GGCC	4 cut(s)	278, 629, 1535, 1619
ApoI	RAATTY	3 cut(s)	508, 681, 1111
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	2 cut(s)	79, 1106
AspS9I	GGNCC	2 cut(s)	629, 744
AsuHPI	GGTGA	9 cut(s)	464, 773, 890, 932, 1352, 1369, 1700, 1719, 1738
AsuII	TTCGAA	1 cut(s)	1756
AvaII	GGWCC	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	1588
BalI	TGGCCA	1 cut(s)	1537
BamHI	GGATCC	1 cut(s)	1473
BanI	GGYRCC	3 cut(s)	1454, 1585, 1643
BanII	GRGCYC	1 cut(s)	411
BauI	CACGAG	1 cut(s)	1623
BccI	CCATC	3 cut(s)	752, 886, 1445
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	4 cut(s)	1573, 1641, 1648, 1686
BcoDI	GTCTC	5 cut(s)	428, 614, 619, 851, 1748
BfaI	CTAG	5 cut(s)	108, 140, 1320, 1389, 1581
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	1107
BfrI	CTTAAG	1 cut(s)	1478
BfuAI	ACCTGC	3 cut(s)	262, 982, 1214
BlpI	GCTNAGC	2 cut(s)	1062, 1767
Bme1390I	CCNGG	4 cut(s)	1573, 1641, 1648, 1686
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	2 cut(s)	629, 744
BmiI	GGNNCC	5 cut(s)	1047, 1456, 1475, 1587, 1645
BmrFI	CCNGG	4 cut(s)	1573, 1641, 1648, 1686
BmsI	GCATC	6 cut(s)	139, 322, 358, 647, 1246, 1360
BoxI	GACNNNNGTC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	1686
Bpu1102I	GCTNAGC	2 cut(s)	1062, 1767
Bpu14I	TTCGAA	1 cut(s)	1756
BpuEI	CTTGAG	1 cut(s)	303
BsaAI	YACGTR	2 cut(s)	199, 365
BsaBI	GATNNNNATC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	4 cut(s)	476, 513, 1049, 1549
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 342, 433, 1042, 1533, 1572, 1709
Bse118I	RCCGGY	2 cut(s)	114, 1238
Bse1I	ACTGG	6 cut(s)	454, 624, 772, 1154, 1384, 1703
Bse3DI	GCAATG	1 cut(s)	1291
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	4 cut(s)	1573, 1641, 1648, 1686
BseDI	CCNNGG	4 cut(s)	476, 513, 1049, 1549
BseGI	GGATG	5 cut(s)	154, 616, 670, 1261, 1456
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	7 cut(s)	33, 342, 433, 1042, 1533, 1572, 1709
BseMI	GCAATG	1 cut(s)	1291
BseMII	CTCAG	5 cut(s)	275, 630, 651, 846, 1053
BseNI	ACTGG	6 cut(s)	454, 624, 772, 1154, 1384, 1703
BseRI	GAGGAG	2 cut(s)	465, 1507
BseSI	GKGCMC	1 cut(s)	1588
BsgI	GTGCAG	4 cut(s)	917, 954, 1242, 1518
Bsh1236I	CGCG	2 cut(s)	340, 1542
Bsh1285I	CGRYCG	2 cut(s)	701, 1243
BshFI	GGCC	4 cut(s)	280, 631, 1537, 1621
BshNI	GGYRCC	3 cut(s)	1454, 1585, 1643
BsiEI	CGRYCG	2 cut(s)	701, 1243
BsiSI	CCGG	2 cut(s)	115, 1239
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	7 cut(s)	33, 342, 433, 1042, 1533, 1572, 1709
BsmAI	GTCTC	5 cut(s)	428, 614, 619, 851, 1748
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	2 cut(s)	295, 388
BsnI	GGCC	4 cut(s)	280, 631, 1537, 1621
Bso31I	GGTCTC	1 cut(s)	614
Bsp119I	TTCGAA	1 cut(s)	1756
Bsp1286I	GDGCHC	2 cut(s)	411, 1588
Bsp1407I	TGTACA	1 cut(s)	1084
Bsp143I	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
Bsp1720I	GCTNAGC	2 cut(s)	1062, 1767
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	9 cut(s)	289, 338, 733, 934, 1182, 1427, 1515, 1666, 1775
BspANI	GGCC	4 cut(s)	280, 631, 1537, 1621
BspCNI	CTCAG	5 cut(s)	274, 629, 652, 847, 1054
BspFNI	CGCG	2 cut(s)	340, 1542
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	5 cut(s)	1047, 1456, 1475, 1587, 1645
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	3 cut(s)	262, 982, 1214
BspPI	GGATC	3 cut(s)	464, 1468, 1481
BspT104I	TTCGAA	1 cut(s)	1756
BspT107I	GGYRCC	3 cut(s)	1454, 1585, 1643
BspTI	CTTAAG	1 cut(s)	1478
BspTNI	GGTCTC	1 cut(s)	614
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	1291
BsrFI	RCCGGY	2 cut(s)	114, 1238
BsrGI	TGTACA	1 cut(s)	1084
BsrI	ACTGG	6 cut(s)	454, 624, 772, 1154, 1384, 1703
BssAI	RCCGGY	2 cut(s)	114, 1238
BssECI	CCNNGG	4 cut(s)	476, 513, 1049, 1549
BssMI	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
BssSI	CACGAG	1 cut(s)	1623
BssT1I	CCWWGG	2 cut(s)	513, 1049
Bst2BI	CACGAG	1 cut(s)	1623
Bst2UI	CCWGG	4 cut(s)	1573, 1641, 1648, 1686
Bst4CI	ACNGT	4 cut(s)	523, 728, 878, 905
BstAFI	CTTAAG	1 cut(s)	1478
BstAPI	GCANNNNNTGC	4 cut(s)	545, 1178, 1436, 1523
BstAUI	TGTACA	1 cut(s)	1084
BstBAI	YACGTR	2 cut(s)	199, 365
BstBI	TTCGAA	1 cut(s)	1756
BstC8I	GCNNGC	6 cut(s)	116, 773, 1102, 1655, 1773, 1777
BstDEI	CTNAG	9 cut(s)	173, 261, 616, 660, 855, 912, 929, 1062, 1767
BstDSI	CCRYGG	2 cut(s)	513, 1549
BstF5I	GGATG	5 cut(s)	154, 616, 670, 1261, 1456
BstFNI	CGCG	2 cut(s)	340, 1542
BstH2I	RGCGCY	1 cut(s)	1107
BstHHI	GCGC	2 cut(s)	79, 1106
BstKTI	GATC	7 cut(s)	472, 592, 701, 928, 955, 1219, 1476
BstMAI	GTCTC	5 cut(s)	428, 614, 619, 851, 1748
BstMBI	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
BstMCI	CGRYCG	2 cut(s)	701, 1243
BstMWI	GCNNNNNNNGC	8 cut(s)	149, 286, 545, 1178, 1436, 1523, 1663, 1772
BstNI	CCWGG	4 cut(s)	1573, 1641, 1648, 1686
BstNSI	RCATGY	1 cut(s)	1657
BstPAI	GACNNNNGTC	1 cut(s)	487
BstSCI	CCNGG	4 cut(s)	1571, 1639, 1646, 1684
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	1588
BstUI	CGCG	2 cut(s)	340, 1542
BstX2I	RGATCY	1 cut(s)	1473
BstYI	RGATCY	1 cut(s)	1473
BsuRI	GGCC	4 cut(s)	280, 631, 1537, 1621
BtgI	CCRYGG	2 cut(s)	513, 1549
BtsCI	GGATG	5 cut(s)	154, 616, 670, 1261, 1456
BtsI	GCAGTG	2 cut(s)	1566, 1664
BtsIMutI	CAGTG	9 cut(s)	371, 447, 631, 733, 887, 910, 1566, 1664, 1710
BveI	ACCTGC	3 cut(s)	262, 982, 1214
Cac8I	GCNNGC	6 cut(s)	116, 773, 1102, 1655, 1773, 1777
CaiI	CAGNNNCTG	4 cut(s)	545, 1379, 1523, 1709
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	79, 1106
Cfr10I	RCCGGY	2 cut(s)	114, 1238
Cfr13I	GGNCC	2 cut(s)	629, 744
CseI	GACGC	2 cut(s)	329, 410
CsiI	ACCWGGT	1 cut(s)	1639
Csp6I	GTAC	3 cut(s)	362, 901, 1085
CviAII	CATG	8 cut(s)	514, 686, 1414, 1528, 1533, 1603, 1654, 1714
CviQI	GTAC	3 cut(s)	362, 901, 1085
DdeI	CTNAG	9 cut(s)	173, 261, 616, 660, 855, 912, 929, 1062, 1767
DpnI	GATC	7 cut(s)	471, 591, 700, 927, 954, 1218, 1475
DpnII	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
EaeI	YGGCCR	1 cut(s)	1535
EciI	GGCGGA	1 cut(s)	949
Eco130I	CCWWGG	2 cut(s)	513, 1049
Eco147I	AGGCCT	1 cut(s)	1621
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	614
Eco32I	GATATC	1 cut(s)	939
Eco47I	GGWCC	1 cut(s)	744
Eco47III	AGCGCT	1 cut(s)	1105
Eco57I	CTGAAG	3 cut(s)	470, 558, 570
EcoRII	CCWGG	4 cut(s)	1571, 1639, 1646, 1684
EcoRV	GATATC	1 cut(s)	939
EcoT14I	CCWWGG	2 cut(s)	513, 1049
EcoT22I	ATGCAT	1 cut(s)	1441
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	2 cut(s)	513, 1049
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	8 cut(s)	517, 689, 1417, 1531, 1536, 1606, 1657, 1717
FalI	AAGNNNNNCTT	2 cut(s)	1299, 1331
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	8 cut(s)	513, 685, 1413, 1527, 1532, 1602, 1653, 1713
FauI	CCCGC	3 cut(s)	345, 1659, 1768
FokI	GGATG	5 cut(s)	161, 623, 677, 1268, 1463
FriOI	GRGCYC	1 cut(s)	411
FspBI	CTAG	5 cut(s)	108, 140, 1320, 1389, 1581
GlaI	GCGC	2 cut(s)	78, 1105
GsuI	CTGGAG	1 cut(s)	1686
HaeII	RGCGCY	1 cut(s)	1107
HaeIII	GGCC	4 cut(s)	280, 631, 1537, 1621
HapII	CCGG	2 cut(s)	115, 1239
HgaI	GACGC	2 cut(s)	329, 410
HhaI	GCGC	2 cut(s)	79, 1106
Hin1II	CATG	8 cut(s)	517, 689, 1417, 1531, 1536, 1606, 1657, 1717
Hin6I	GCGC	2 cut(s)	77, 1104
HinP1I	GCGC	2 cut(s)	77, 1104
HincII	GTYRAC	2 cut(s)	670, 962
HindII	GTYRAC	2 cut(s)	670, 962
HinfI	GANTC	8 cut(s)	56, 274, 455, 782, 834, 1187, 1262, 1670
HpaII	CCGG	2 cut(s)	115, 1239
HphI	GGTGA	9 cut(s)	464, 773, 890, 932, 1352, 1369, 1700, 1719, 1738
Hpy166II	GTNNAC	5 cut(s)	196, 447, 670, 962, 1000
Hpy188I	TCNGA	7 cut(s)	181, 264, 619, 744, 781, 793, 1117
Hpy188III	TCNNGA	6 cut(s)	108, 686, 1043, 1266, 1320, 1448
Hpy8I	GTNNAC	5 cut(s)	196, 447, 670, 962, 1000
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	4 cut(s)	252, 786, 794, 1126
HpyCH4III	ACNGT	4 cut(s)	523, 728, 878, 905
HpyCH4IV	ACGT	3 cut(s)	198, 364, 443
HpyF10VI	GCNNNNNNNGC	8 cut(s)	149, 286, 545, 1178, 1436, 1523, 1663, 1772
HpyF3I	CTNAG	9 cut(s)	173, 261, 616, 660, 855, 912, 929, 1062, 1767
HpySE526I	ACGT	3 cut(s)	198, 364, 443
Hsp92II	CATG	8 cut(s)	517, 689, 1417, 1531, 1536, 1606, 1657, 1717
HspAI	GCGC	2 cut(s)	77, 1104
KroI	GCCGGC	1 cut(s)	114
KroNI	GCCGGC	1 cut(s)	116
Kzo9I	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
LmnI	GCTCC	7 cut(s)	182, 579, 1045, 1111, 1525, 1650, 1726
LweI	GCATC	6 cut(s)	139, 322, 358, 647, 1246, 1360
MabI	ACCWGGT	1 cut(s)	1639
MaeI	CTAG	5 cut(s)	108, 140, 1320, 1389, 1581
MaeII	ACGT	3 cut(s)	198, 364, 443
MaeIII	GTNAC	7 cut(s)	212, 452, 556, 869, 878, 1467, 1543
MalI	GATC	7 cut(s)	471, 591, 700, 927, 954, 1218, 1475
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
MboII	GAAGA	6 cut(s)	17, 563, 564, 689, 1200, 1548
MflI	RGATCY	1 cut(s)	1473
MhlI	GDGCHC	2 cut(s)	411, 1588
MlsI	TGGCCA	1 cut(s)	1537
MluCI	AATT	8 cut(s)	353, 394, 508, 681, 883, 982, 1111, 1780
MluI	ACGCGT	1 cut(s)	1540
MluNI	TGGCCA	1 cut(s)	1537
MlyI	GAGTC	2 cut(s)	449, 843
Mox20I	TGGCCA	1 cut(s)	1537
Mph1103I	ATGCAT	1 cut(s)	1441
MroNI	GCCGGC	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	1537
MseI	TTAA	8 cut(s)	90, 567, 822, 1127, 1329, 1479, 1488, 1631
MslI	CAYNNNNRTG	2 cut(s)	1007, 1703
Msp20I	TGGCCA	1 cut(s)	1537
MspA1I	CMGCKG	2 cut(s)	155, 1775
MspCI	CTTAAG	1 cut(s)	1478
MspI	CCGG	2 cut(s)	115, 1239
MspR9I	CCNGG	4 cut(s)	1573, 1641, 1648, 1686
Mva1269I	GAATGC	2 cut(s)	295, 388
MvaI	CCWGG	4 cut(s)	1573, 1641, 1648, 1686
MvnI	CGCG	2 cut(s)	340, 1542
MwoI	GCNNNNNNNGC	8 cut(s)	149, 286, 545, 1178, 1436, 1523, 1663, 1772
NaeI	GCCGGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
NgoMIV	GCCGGC	1 cut(s)	114
NlaIII	CATG	8 cut(s)	517, 689, 1417, 1531, 1536, 1606, 1657, 1717
NlaIV	GGNNCC	5 cut(s)	1047, 1456, 1475, 1587, 1645
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	4 cut(s)	212, 452, 878, 1467
NsiI	ATGCAT	1 cut(s)	1441
NspI	RCATGY	1 cut(s)	1657
NspV	TTCGAA	1 cut(s)	1756
OliI	CACNNNNGTG	1 cut(s)	1703
PaeI	GCATGC	1 cut(s)	1657
PagI	TCATGA	1 cut(s)	685
PaqCI	CACCTGC	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	1621
PcsI	WCGNNNNNNNCGW	2 cut(s)	598, 1546
PctI	GAATGC	2 cut(s)	295, 388
PdiI	GCCGGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	6 cut(s)	56, 274, 782, 1187, 1262, 1670
PflFI	GACNNNGTC	1 cut(s)	597
PflMI	CCANNNNNTGG	2 cut(s)	1533, 1709
Ple19I	CGATCG	1 cut(s)	701
PleI	GAGTC	2 cut(s)	449, 842
PpsI	GAGTC	2 cut(s)	449, 842
Ppu21I	YACGTR	2 cut(s)	199, 365
PshAI	GACNNNNGTC	1 cut(s)	487
Psp6I	CCWGG	4 cut(s)	1571, 1639, 1646, 1684
PspGI	CCWGG	4 cut(s)	1571, 1639, 1646, 1684
PspN4I	GGNNCC	5 cut(s)	1047, 1456, 1475, 1587, 1645
PspPI	GGNCC	2 cut(s)	629, 744
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	4 cut(s)	545, 1379, 1523, 1709
PsuI	RGATCY	1 cut(s)	1473
PsyI	GACNNNGTC	1 cut(s)	597
PvuI	CGATCG	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	3 cut(s)	363, 902, 1086
RsaNI	GTAC	3 cut(s)	362, 901, 1085
RseI	CAYNNNNRTG	2 cut(s)	1007, 1703
SaqAI	TTAA	8 cut(s)	90, 567, 822, 1127, 1329, 1479, 1488, 1631
Sau3AI	GATC	7 cut(s)	469, 589, 698, 925, 952, 1216, 1473
Sau96I	GGNCC	2 cut(s)	629, 744
SchI	GAGTC	2 cut(s)	449, 843
ScrFI	CCNGG	4 cut(s)	1573, 1641, 1648, 1686
SduI	GDGCHC	2 cut(s)	411, 1588
SexAI	ACCWGGT	1 cut(s)	1639
SfaNI	GCATC	6 cut(s)	139, 322, 358, 647, 1246, 1360
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	1756
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	2 cut(s)	1007, 1703
SmlI	CTYRAG	2 cut(s)	318, 1478
SmoI	CTYRAG	2 cut(s)	318, 1478
SphI	GCATGC	1 cut(s)	1657
Sse9I	AATT	8 cut(s)	353, 394, 508, 681, 883, 982, 1111, 1780
SseBI	AGGCCT	1 cut(s)	1621
SsiI	CCGC	9 cut(s)	289, 338, 733, 934, 1182, 1427, 1515, 1666, 1775
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	5 cut(s)	108, 140, 1320, 1389, 1581
StuI	AGGCCT	1 cut(s)	1621
StyD4I	CCNGG	4 cut(s)	1571, 1639, 1646, 1684
StyI	CCWWGG	2 cut(s)	513, 1049
TaaI	ACNGT	4 cut(s)	523, 728, 878, 905
TaiI	ACGT	3 cut(s)	201, 367, 446
TaqI	TCGA	3 cut(s)	592, 701, 1756
TasI	AATT	8 cut(s)	353, 394, 508, 681, 883, 982, 1111, 1780
TatI	WGTACW	2 cut(s)	900, 1084
TauI	GCSGC	4 cut(s)	292, 1184, 1430, 1517
TfiI	GAWTC	6 cut(s)	56, 274, 782, 1187, 1262, 1670
Tru1I	TTAA	8 cut(s)	90, 567, 822, 1127, 1329, 1479, 1488, 1631
Tru9I	TTAA	8 cut(s)	90, 567, 822, 1127, 1329, 1479, 1488, 1631
TscAI	CASTG	9 cut(s)	378, 454, 631, 733, 894, 910, 1573, 1664, 1710
TseFI	GTSAC	4 cut(s)	212, 452, 878, 1467
Tsp45I	GTSAC	4 cut(s)	212, 452, 878, 1467
TspDTI	ATGAA	9 cut(s)	542, 674, 690, 702, 813, 1145, 1194, 1402, 1548
TspGWI	ACGGA	3 cut(s)	416, 997, 1486
TspRI	CASTG	9 cut(s)	378, 454, 631, 733, 894, 910, 1573, 1664, 1710
Tth111I	GACNNNGTC	1 cut(s)	597
Van91I	CCANNNNNTGG	2 cut(s)	1533, 1709
Vha464I	CTTAAG	1 cut(s)	1478
VpaK11BI	GGWCC	1 cut(s)	744
XapI	RAATTY	3 cut(s)	508, 681, 1111
XbaI	TCTAGA	2 cut(s)	107, 1319
XceI	RCATGY	1 cut(s)	1657
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	5 cut(s)	108, 140, 1320, 1389, 1581
Zsp2I	ATGCAT	1 cut(s)	1441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.