pycom03g10060

Ribosomal RNA processing protein 36 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0007303
Physical Location & Seq
Reverse (-)
9046852 .. 9049919
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGTTAAAACCTGGTACCTCGATGGGAATGCCAACCAAAACAAAGTTCGAAGAACCTGAATCTTCGTCTTCTGAGGATGAGGAGGAGATAGAGCAGGCGCTTGCAGATGTGACATTTGGGGAACTGCAGAAGGCACGCTCGAACGGGTCACATTTAGTCCACCTTAAGCCTAAAGAAGAGAAGAAGGGTGGCCGGGCGAACAAGAACCGGCCGATGGAGGTTACTTGCACGAAGCCTGTCCCTAGATTTCGAGAAGTCATTCAAGGTTCAAAAAAGGTGGTACGGGACCCACGTTTCGAATCTTTATGTGGAGAACTTGATGTTGATCGGTTTAGGAAGAAATATCGCTTTTTATTTGAGGAGGAGCTTCCTGCCGAAAAAGAGGAACTACAGAAGCAAATCAAGAAATCTAAGGACCCAGAAACCATTGAAGAACTAAAGAAACACATATCTTTGATTGATAAACAGCTAAAATCTGATTCAAAGCATACTGAAGCTGCAATACTGACTGAGCACAAGAAAAAAGAGAGGAAAGCAGCAAAGGAAGGGAAGCAACCCTTTTTCCTTAAGAAATCTGAGATCCGAAAGAAAAGACTCGTGGAGAAGTATAAACAACTCAAGGCATCTGGCAAGCTCGAAGCCTTCATTGAGAAAAGGCGCAGGAAGAATGCAGCAAAGGACCACAGATACATGCCATACCGCAGGCCCGACGCTACCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRP36

Protein Analysis

241

Amino Acids

28.04

Weight (kDa)

9.67

Isoelectric Point (pI)

65.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP36 PF06102 65 - 229 2.2e-49 rRNA biogenesis protein RRP36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AciI CCGC 1 cut(s) 700
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 2 cut(s) 190, 209
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 2 cut(s) 16, 282
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 2 cut(s) 164, 566
AgsI TTSAA 4 cut(s) 263, 270, 431, 483
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 4 cut(s) 367, 469, 497, 634
AluI AGCT 4 cut(s) 367, 469, 497, 634
Alw21I GWGCWC 1 cut(s) 516
AlwI GGATC 1 cut(s) 574
AoxI GGCC 3 cut(s) 190, 209, 704
ApeKI GCWGC 3 cut(s) 497, 536, 671
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
Asp700I GAANNNNTTC 1 cut(s) 258
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 2 cut(s) 100, 660
AspS9I GGNCC 4 cut(s) 286, 415, 679, 705
AsuC2I CCSGG 1 cut(s) 194
AsuII TTCGAA 2 cut(s) 48, 297
AvaII GGWCC 3 cut(s) 286, 415, 679
BanI GGYRCC 1 cut(s) 14
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BauI CACGAG 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 484, 548, 683
BccI CCATC 2 cut(s) 16, 208
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 1 cut(s) 194
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 125, 389
BfoI RGCGCY 1 cut(s) 101
BfrI CTTAAG 2 cut(s) 164, 566
BisI GCNGC 3 cut(s) 498, 537, 672
BlsI GCNGC 3 cut(s) 499, 538, 673
Bme1390I CCNGG 2 cut(s) 12, 194
Bme18I GGWCC 3 cut(s) 286, 415, 679
BmgT120I GGNCC 4 cut(s) 286, 415, 679, 705
BmiI GGNNCC 4 cut(s) 16, 287, 288, 417
BmrFI CCNGG 2 cut(s) 12, 194
BmsI GCATC 1 cut(s) 632
BpiI GAAGAC 1 cut(s) 60
Bpu14I TTCGAA 2 cut(s) 48, 297
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 63, 501, 567
BseRI GAGGAG 4 cut(s) 95, 98, 374, 377
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 484, 548, 683
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 3 cut(s) 192, 211, 706
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 2 cut(s) 193, 208
BslFI GGGAC 2 cut(s) 224, 299
BslI CCNNNNNNNGG 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 224, 299
BsmI GAATGC 2 cut(s) 33, 673
BsnI GGCC 3 cut(s) 192, 211, 706
Bsp119I TTCGAA 2 cut(s) 48, 297
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 325, 579
BspACI CCGC 1 cut(s) 700
BspANI GGCC 3 cut(s) 192, 211, 706
BspCNI CTCAG 3 cut(s) 64, 502, 568
BspLI GGNNCC 4 cut(s) 16, 287, 288, 417
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 574
BspT104I TTCGAA 2 cut(s) 48, 297
BspT107I GGYRCC 1 cut(s) 14
BspTI CTTAAG 2 cut(s) 164, 566
BsrFI RCCGGY 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 207
BssMI GATC 2 cut(s) 325, 579
BssSI CACGAG 1 cut(s) 596
Bst2BI CACGAG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 171
BstAFI CTTAAG 2 cut(s) 164, 566
BstBI TTCGAA 2 cut(s) 48, 297
BstC8I GCNNGC 5 cut(s) 96, 102, 136, 632, 704
BstDEI CTNAG 4 cut(s) 72, 411, 510, 576
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 2 cut(s) 100, 660
BstKTI GATC 2 cut(s) 328, 582
BstMBI GATC 2 cut(s) 325, 579
BstMCI CGRYCG 1 cut(s) 212
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 2 cut(s) 10, 192
BstSFI CTRYAG 2 cut(s) 125, 389
BstV1I GCAGC 3 cut(s) 484, 548, 683
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
BstZI CGGCCG 1 cut(s) 209
BsuRI GGCC 3 cut(s) 192, 211, 706
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 5 cut(s) 96, 102, 136, 632, 704
CfoI GCGC 2 cut(s) 100, 660
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 4 cut(s) 286, 415, 679, 705
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 15, 281
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 1 cut(s) 691
CviQI GTAC 2 cut(s) 15, 281
DdeI CTNAG 4 cut(s) 72, 411, 510, 576
DpnI GATC 2 cut(s) 327, 581
DpnII GATC 2 cut(s) 325, 579
EaeI YGGCCR 2 cut(s) 190, 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 209
Eco47I GGWCC 3 cut(s) 286, 415, 679
Eco52I CGGCCG 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 513
EcoO109I RGGNCCY 2 cut(s) 286, 415
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 694
FaiI YATR 6 cut(s) 307, 449, 489, 609, 692, 697
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 2 cut(s) 224, 299
FatI CATG 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 498, 537, 672
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 3 cut(s) 498, 537, 672
FspBI CTAG 1 cut(s) 243
GlaI GCGC 2 cut(s) 99, 659
GluI GCNGC 3 cut(s) 498, 537, 672
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 3 cut(s) 192, 211, 706
HapII CCGG 2 cut(s) 193, 208
HhaI GCGC 2 cut(s) 100, 660
Hin1II CATG 1 cut(s) 694
Hin6I GCGC 2 cut(s) 98, 658
HinP1I GCGC 2 cut(s) 98, 658
HinfI GANTC 4 cut(s) 59, 299, 479, 594
HpaII CCGG 2 cut(s) 193, 208
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 73, 478, 577, 584
Hpy188III TCNNGA 2 cut(s) 251, 403
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 4 cut(s) 124, 178, 539, 652
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 104, 127, 228, 500, 671
HpyF3I CTNAG 4 cut(s) 72, 411, 510, 576
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 1 cut(s) 694
HspAI GCGC 2 cut(s) 98, 658
KflI GGGWCCC 1 cut(s) 286
KpnI GGTACC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 325, 579
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 3 cut(s) 484, 548, 683
LweI GCATC 1 cut(s) 632
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 3 cut(s) 109, 147, 220
MalI GATC 2 cut(s) 327, 581
MboI GATC 2 cut(s) 325, 579
MboII GAAGA 8 cut(s) 54, 60, 62, 188, 193, 349, 443, 676
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 516
MlyI GAGTC 1 cut(s) 588
MnlI CCTC 9 cut(s) 28, 67, 73, 76, 211, 352, 355, 376, 522
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 3 cut(s) 5, 165, 567
MspCI CTTAAG 2 cut(s) 164, 566
MspI CCGG 2 cut(s) 193, 208
MspR9I CCNGG 2 cut(s) 12, 194
Mva1269I GAATGC 2 cut(s) 33, 673
MvaI CCWGG 1 cut(s) 12
NciI CCSGG 1 cut(s) 194
NdeII GATC 2 cut(s) 325, 579
NlaIII CATG 1 cut(s) 694
NlaIV GGNNCC 4 cut(s) 16, 287, 288, 417
NmuCI GTSAC 2 cut(s) 109, 147
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 2 cut(s) 48, 297
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PctI GAATGC 2 cut(s) 33, 673
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 59, 299, 479
PkrI GCNGC 3 cut(s) 499, 538, 673
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
PpuMI RGGWCCY 2 cut(s) 286, 415
Psp5II RGGWCCY 2 cut(s) 286, 415
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 4 cut(s) 16, 287, 288, 417
PspPI GGNCC 4 cut(s) 286, 415, 679, 705
PspPPI RGGWCCY 2 cut(s) 286, 415
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 579
RsaI GTAC 2 cut(s) 16, 282
RsaNI GTAC 2 cut(s) 15, 281
SaqAI TTAA 3 cut(s) 5, 165, 567
SatI GCNGC 3 cut(s) 498, 537, 672
Sau3AI GATC 2 cut(s) 325, 579
Sau96I GGNCC 4 cut(s) 286, 415, 679, 705
SchI GAGTC 1 cut(s) 588
ScrFI CCNGG 2 cut(s) 12, 194
SduI GDGCHC 1 cut(s) 516
SexAI ACCWGGT 1 cut(s) 10
SfaNI GCATC 1 cut(s) 632
SfcI CTRYAG 2 cut(s) 125, 389
SfuI TTCGAA 2 cut(s) 48, 297
SinI GGWCC 3 cut(s) 286, 415, 679
SmlI CTYRAG 3 cut(s) 164, 566, 617
SmoI CTYRAG 3 cut(s) 164, 566, 617
SsiI CCGC 1 cut(s) 700
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 10, 192
TaiI ACGT 1 cut(s) 295
TaqI TCGA 6 cut(s) 20, 48, 140, 250, 297, 636
TfiI GAWTC 3 cut(s) 59, 299, 479
Tru1I TTAA 3 cut(s) 5, 165, 567
Tru9I TTAA 3 cut(s) 5, 165, 567
TseFI GTSAC 2 cut(s) 109, 147
TseI GCWGC 3 cut(s) 497, 536, 671
Tsp45I GTSAC 2 cut(s) 109, 147
TspDTI ATGAA 1 cut(s) 634
Vha464I CTTAAG 2 cut(s) 164, 566
VpaK11BI GGWCC 3 cut(s) 286, 415, 679
XceI RCATGY 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.