Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011442

Physical Location & Seq

Genomic Coordinates Forward (+)

3845332 .. 3849514

Gene Structure 4183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCATGATGATGAAGAAAACGAGGAAGAAGAAAAACCTGTATGGGGTGGAAAGAAGCAAAACTATTATGGTGTTGATAATGGTGATTTTGAGCAAAAATCAAGTGACGATGAATCTGTTGAAGAGGAAGAATCAGAAGTGGTGAGGCTGCAGAAAGAAAGGGCAAAATTTTCAACGCTGGATGACTATGGGCTTGACGATATTTGGGAAAATGAGAATGATGAGGAATTAACTTTTGAGGAAATTTCAATGAAGGGAAACAGTACAAAAAGGTTTCCAGTGGGAATCGATCTTGCAGATGGCACGGGTACAGCTTATGAGGAGGTGAAGAAAGATTTGAGTGCCTGGTCAAAAGCGGAGCAAATGGATGTTTTATATTATTCCGCACCTGAATTAGTTGGGTTGTTGTTAGAGCTGAATGATGCACATGAAGAGCTTGAAAGAAAAGTGAATCCACTTCTGGGCAAGGTTAAAAAAGGGGAGGTCATGTTGGAAGGAGGGATGCGCTATTTAGAGGTTAAGGAGCTTCTTCTGCTTTCCTACTGCCAAGCAATAACATTCTACATTCTTCTCAAGTCTGAAGGACAACCAGTTCGTGACCATCCAGTACTTGCTTGCCTAATAGAGATCAAGATTTTGTTGAATAAGATGAAGCAACTTGATGGCAATCTACCATCTCATTTTGAGGAAATTTTAAACAAATATAATTGGGTGGCAGCAGTGGCAAAGTCGGTGCATGACATTGCTAAGGTAGAAATACCGGAGTCTCTGAAGGATAATGAAAACCAGAATGATGAAGTTGATGTACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAGTTGAAGCAGAAAGGTGTCTTCAGTTCCATCACTCCGAAAATTGATAAACCCAGGAAACTTCTGAAGCCATTGAATGGGAAGCTTGAATCATATGATGATTTTAATGATGACACTGTAAATATTGAGGGTGCCATCCATGGATTGAACAACGGTCGTGCAAGTCGAAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

342

Amino Acids

38.92

Weight (kDa)

4.72

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sas10_Utp3	PF04000	138 - 216	1.8e-17	Sas10/Utp3/C1D family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43650
fragaria_vesca	FvH4_5g27692 FvH4_5g27692 FvH4_5g27692
malus_domestica	MD04G1048900.v1.1 MD17G1177700.v1.1
prunus_persica	Prupe.1G206800_v2.0.a1
pyrus_communis	pycom04g04300
rosa_chinensis	RchiOBHm_Chr7g0219421
rosa_laevigata	RLG00000002290
rosa_multiflora	Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014
rosa_roxburghii	Rroxscaffold_3G00240050
rosa_rugosa	Rorug07G0184900
rosa_samantha	Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200
rosa_wichuraiana	Rw7G027650 Rw7G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	980
AccB7I	CCANNNNNTGG	1 cut(s)	926
AciI	CCGC	2 cut(s)	356, 384
AcsI	RAATTY	3 cut(s)	167, 243, 690
AcuI	CTGAAG	4 cut(s)	600, 791, 856, 935
AfaI	GTAC	4 cut(s)	265, 310, 609, 807
AfiI	CCNNNNNNNGG	3 cut(s)	44, 461, 926
AjnI	CCWGG	2 cut(s)	344, 902
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	6 cut(s)	314, 415, 436, 526, 836, 934
AluI	AGCT	6 cut(s)	314, 415, 436, 526, 836, 934
Alw26I	GTCTC	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	148, 716, 836
ApoI	RAATTY	3 cut(s)	167, 243, 690
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AspLEI	GCGC	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	95, 154, 337
BanI	GGYRCC	1 cut(s)	980
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	1 cut(s)	862
BbvI	GCAGC	3 cut(s)	135, 728, 823
BccI	CCATC	6 cut(s)	293, 609, 656, 682, 887, 992
BciT130I	CCWGG	2 cut(s)	346, 904
BcoDI	GTCTC	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	149, 717, 837
BlsI	GCNGC	3 cut(s)	150, 718, 838
BmcAI	AGTACT	1 cut(s)	609
Bme1390I	CCNGG	2 cut(s)	346, 904
BmiI	GGNNCC	1 cut(s)	982
BmrFI	CCNGG	2 cut(s)	346, 904
BmsI	GCATC	2 cut(s)	412, 492
BpiI	GAAGAC	1 cut(s)	862
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	557, 863
Bsa29I	ATCGAT	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	902, 988
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 461, 926
Bse1I	ACTGG	3 cut(s)	278, 590, 605
Bse3DI	GCAATG	1 cut(s)	741
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	346, 904
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	902, 988
BseGI	GGATG	5 cut(s)	187, 373, 507, 601, 984
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	44, 461, 926
BseMI	GCAATG	1 cut(s)	741
BseNI	ACTGG	3 cut(s)	278, 590, 605
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	135, 728, 823
Bsh1285I	CGRYCG	1 cut(s)	1006
BshNI	GGYRCC	1 cut(s)	980
BshVI	ATCGAT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	1006
BsiSI	CCGG	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	44, 461, 926
BsmAI	GTCTC	1 cut(s)	771
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	2 cut(s)	289, 627
Bsp19I	CCATGG	1 cut(s)	988
BspACI	CCGC	2 cut(s)	356, 384
BspDI	ATCGAT	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	982
BspMAI	CTGCAG	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	741
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	3 cut(s)	278, 590, 605
BssECI	CCNNGG	2 cut(s)	902, 988
BssMI	GATC	2 cut(s)	289, 627
BssT1I	CCWWGG	1 cut(s)	988
Bst2UI	CCWGG	2 cut(s)	346, 904
Bst4CI	ACNGT	3 cut(s)	263, 967, 1004
Bst6I	CTCTTC	2 cut(s)	117, 426
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	988
BstF5I	GGATG	5 cut(s)	187, 373, 507, 601, 984
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	2 cut(s)	292, 630
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	2 cut(s)	289, 627
BstMCI	CGRYCG	1 cut(s)	1006
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 722
BstNI	CCWGG	2 cut(s)	346, 904
BstSCI	CCNGG	2 cut(s)	344, 902
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	135, 728, 823
BstV2I	GAAGAC	1 cut(s)	862
Bsu15I	ATCGAT	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	988
BtsCI	GGATG	5 cut(s)	187, 373, 507, 601, 984
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	285, 726, 963
Cac8I	GCNNGC	1 cut(s)	616
CfoI	GCGC	1 cut(s)	507
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	4 cut(s)	264, 309, 608, 806
CviAII	CATG	6 cut(s)	5, 428, 487, 737, 814, 989
CviJI	RGCY	9 cut(s)	148, 193, 314, 415, 436, 526, 836, 919, 934
CviKI_1	RGCY	9 cut(s)	148, 193, 314, 415, 436, 526, 836, 919, 934
CviQI	GTAC	4 cut(s)	264, 309, 608, 806
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	2 cut(s)	291, 629
DpnII	GATC	2 cut(s)	289, 627
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	117, 426
EarI	CTCTTC	2 cut(s)	117, 426
Eco130I	CCWWGG	1 cut(s)	988
Eco57I	CTGAAG	4 cut(s)	600, 791, 856, 935
EcoRII	CCWGG	2 cut(s)	344, 902
EcoT14I	CCWWGG	1 cut(s)	988
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	988
FaeI	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
FatI	CATG	6 cut(s)	4, 427, 486, 736, 813, 988
FauNDI	CATATG	1 cut(s)	943
Fnu4HI	GCNGC	3 cut(s)	149, 717, 837
FokI	GGATG	5 cut(s)	194, 380, 514, 588, 971
Fsp4HI	GCNGC	3 cut(s)	149, 717, 837
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	3 cut(s)	149, 717, 837
HapII	CCGG	1 cut(s)	761
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	6 cut(s)	113, 131, 285, 451, 764, 938
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	3 cut(s)	95, 154, 337
Hpy188I	TCNGA	5 cut(s)	136, 580, 771, 888, 915
Hpy188III	TCNNGA	2 cut(s)	596, 631
HpyAV	CCTTC	5 cut(s)	247, 488, 575, 766, 1011
HpyCH4III	ACNGT	3 cut(s)	263, 967, 1004
HpyCH4V	TGCA	6 cut(s)	4, 151, 296, 425, 736, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 722
HpyF3I	CTNAG	1 cut(s)	747
Hsp92II	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	289, 627
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	358, 523
Lsp1109I	GCAGC	3 cut(s)	135, 728, 823
LweI	GCATC	2 cut(s)	412, 492
MaeIII	GTNAC	2 cut(s)	104, 596
MalI	GATC	2 cut(s)	291, 629
MboI	GATC	2 cut(s)	289, 627
MluCI	AATT	7 cut(s)	167, 227, 243, 392, 690, 706, 891
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	230, 471, 519, 695, 954
MslI	CAYNNNNRTG	2 cut(s)	9, 818
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	2 cut(s)	346, 904
MvaI	CCWGG	2 cut(s)	346, 904
MwoI	GCNNNNNNNGC	2 cut(s)	532, 722
NcoI	CCATGG	1 cut(s)	988
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	2 cut(s)	289, 627
NlaIII	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
NlaIV	GGNNCC	1 cut(s)	982
NmuCI	GTSAC	2 cut(s)	104, 596
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PfeI	GAWTC	5 cut(s)	113, 131, 285, 451, 938
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	3 cut(s)	150, 718, 838
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	344, 902
PspGI	CCWGG	2 cut(s)	344, 902
PspN4I	GGNNCC	1 cut(s)	982
PstI	CTGCAG	1 cut(s)	153
RsaI	GTAC	4 cut(s)	265, 310, 609, 807
RsaNI	GTAC	4 cut(s)	264, 309, 608, 806
RseI	CAYNNNNRTG	2 cut(s)	9, 818
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	5 cut(s)	230, 471, 519, 695, 954
SatI	GCNGC	3 cut(s)	149, 717, 837
Sau3AI	GATC	2 cut(s)	289, 627
ScaI	AGTACT	1 cut(s)	609
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	346, 904
SfaNI	GCATC	2 cut(s)	412, 492
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	9, 818
SmlI	CTYRAG	2 cut(s)	572, 842
SmoI	CTYRAG	2 cut(s)	572, 842
Sse9I	AATT	7 cut(s)	167, 227, 243, 392, 690, 706, 891
SsiI	CCGC	2 cut(s)	356, 384
SspI	AATATT	1 cut(s)	973
StyD4I	CCNGG	2 cut(s)	344, 902
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	3 cut(s)	263, 967, 1004
TaqI	TCGA	2 cut(s)	288, 1015
TasI	AATT	7 cut(s)	167, 227, 243, 392, 690, 706, 891
TatI	WGTACW	3 cut(s)	263, 607, 805
TfiI	GAWTC	5 cut(s)	113, 131, 285, 451, 938
Tru1I	TTAA	5 cut(s)	230, 471, 519, 695, 954
Tru9I	TTAA	5 cut(s)	230, 471, 519, 695, 954
TscAI	CASTG	3 cut(s)	285, 726, 970
TseFI	GTSAC	2 cut(s)	104, 596
TseI	GCWGC	3 cut(s)	148, 716, 836
Tsp45I	GTSAC	2 cut(s)	104, 596
TspDTI	ATGAA	8 cut(s)	27, 126, 266, 444, 665, 795, 810, 830
TspRI	CASTG	3 cut(s)	285, 726, 970
Van91I	CCANNNNNTGG	1 cut(s)	926
XapI	RAATTY	3 cut(s)	167, 243, 690
ZrmI	AGTACT	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.