pycom04g10350

Integral membrane protein TerC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0002679
Physical Location & Seq
Reverse (-)
13106165 .. 13109677
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1128 bp
ATGGGCACGGCTTCCGTCATCCATAACGGCGTCCACATCCATCTGAAGCTCAACTCCCGCCTGCCTAGGGTTTCGCTGCCATCACCAGCCCCAAATTGGAGTATGCCTCACTTCATTCACCATCACATTGTTCCCATCCGCGGCCACTGCCGCCGCGGCCAATCCGCGCCGATTGCACGTTCTAGAGCAACTGAGCAGGATGATGATTTATCCACTTCAGAAGAAAAGAGGGGTGATTCTGCGTCACGAGATGGCATTAGTAATGTGGAACCCTCTCACAATGACTCTCCCGATAAAATTAAGGGGCGCGAAGCTTATGCTGCTTCTGTAAGAACTGTAGCCTTGTGGGTGTGTGCTGCGGTAGCATTTGGCATTGGTGTGGGCTTTAAAGACGGAGTTGGCAAGGCATCGGAGTTCTTTGCCGGGTATTTACTGGAGCAAAGCTTGTCAGTAGACAATCTGTTTGTCTTTGTTCTAGTTTTCAAGTACTTCAAAATGCCAATTATGTATCAGAATCGAGTACTTTCTTATGGTATTGCTGGAGCGGTGGTCTTCCGTTTGACATTAATACTCCTTGGAACAGCCACACTTCAGAGGTTTGAGGCGGTAAATCTTTTGCTGGCCGCAATACTCCTTTACTCATCTTTCAAGCTATTTTCCAGTGAAGAAGATAACACTGATCTATCCGACAATTTTATTGTGAAGACATGCCAGAGATTTATCCCTGTCACGTCTAATTATGATGGCAATCGATTTTTTACATTTCAAGATGGTGTCCGGAAGGCCACACCTTTACTTCTCACGGTAGCAGTTATTGAGCTCAGTGACATAGCATTCGCTGTCGACTCTATACCGGCAGTTTTTGGCGTTACTCGGGATCCATTCATAGTTTTCAGTTCTAATCTTTTTGCGATCGTTGGTTTAAGGTCGCTTTACACACTCATTTCTGCGGGTATGTCAGACTTGGAGTATTTGCAGCCATCAATTGCTGTTGTTCTGGGCTTTATCGGGTGTAAGATGATCCTGGATTTTTTTGGGTTTCACGTATCAACCGAGGTGTCTCTTGGCTTTGTAGCTACAAGTCTTAGTGCCGGGGTGCTGTTAAGTCTAATGAAGAAGTCAGACTAG

Protein Analysis

376

Amino Acids

41.02

Weight (kDa)

7.15

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TerC PF03741 140 - 343 1.3e-48 Integral membrane protein TerC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 545
AccI GTMKAC 2 cut(s) 453, 843
AccII CGCG 4 cut(s) 141, 156, 167, 309
AccIII TCCGGA 1 cut(s) 777
AclWI GGATC 3 cut(s) 872, 885, 1015
AcoI YGGCCR 3 cut(s) 142, 157, 621
AcuI CTGAAG 3 cut(s) 65, 201, 575
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 488, 522
AfiI CCNNNNNNNGG 3 cut(s) 67, 96, 140
AgsI TTSAA 4 cut(s) 484, 493, 649, 767
AjiI CACGTC 1 cut(s) 732
AjnI CCWGG 1 cut(s) 1023
AluBI AGCT 6 cut(s) 49, 314, 444, 652, 820, 1076
AluI AGCT 6 cut(s) 49, 314, 444, 652, 820, 1076
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 1 cut(s) 1065
AlwI GGATC 3 cut(s) 872, 885, 1015
Ama87I CYCGRG 1 cut(s) 873
Aor13HI TCCGGA 1 cut(s) 777
AoxI GGCC 4 cut(s) 142, 157, 621, 783
ApeKI GCWGC 4 cut(s) 76, 320, 356, 976
ArsI GACNNNNNNTTYG 4 cut(s) 446, 478, 818, 850
AseI ATTAAT 1 cut(s) 566
AspA2I CCTAGG 1 cut(s) 65
AspLEI GCGC 2 cut(s) 169, 309
AsuC2I CCSGG 2 cut(s) 424, 1093
AsuHPI GGTGA 3 cut(s) 75, 110, 245
AvaI CYCGRG 1 cut(s) 873
AvrII CCTAGG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 877
BanII GRGCYC 1 cut(s) 822
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 544, 710
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 4 cut(s) 63, 307, 343, 988
BccI CCATC 8 cut(s) 48, 88, 129, 143, 245, 737, 764, 988
BceAI ACGGC 2 cut(s) 24, 43
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 1 cut(s) 1025
BcnI CCSGG 2 cut(s) 424, 1093
BcoDI GTCTC 1 cut(s) 1065
BfaI CTAG 4 cut(s) 66, 183, 476, 1126
BfmI CTRYAG 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 9 cut(s) 77, 142, 151, 154, 157, 321, 357, 624, 977
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 9 cut(s) 78, 143, 152, 155, 158, 322, 358, 625, 978
BmcAI AGTACT 2 cut(s) 488, 522
Bme1390I CCNGG 3 cut(s) 424, 1025, 1093
BmeT110I CYCGRG 1 cut(s) 873
BmgBI CACGTC 1 cut(s) 732
BmiI GGNNCC 2 cut(s) 270, 879
BmrFI CCNGG 3 cut(s) 424, 1025, 1093
BmsI GCATC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 544, 710
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 2 cut(s) 455, 561
BpuMI CCSGG 2 cut(s) 424, 1093
Bsa29I ATCGAT 1 cut(s) 751
BsaAI YACGTR 1 cut(s) 1045
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 6 cut(s) 65, 139, 154, 574, 1053, 1092
BsaWI WCCGGW 1 cut(s) 777
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 96, 140
Bse118I RCCGGY 1 cut(s) 853
Bse1I ACTGG 2 cut(s) 438, 660
Bse8I GATNNNNATC 1 cut(s) 747
BseAI TCCGGA 1 cut(s) 777
BseBI CCWGG 1 cut(s) 1025
BseCI ATCGAT 1 cut(s) 751
BseDI CCNNGG 6 cut(s) 65, 139, 154, 574, 1053, 1092
BseGI GGATG 4 cut(s) 18, 36, 135, 205
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 3 cut(s) 67, 96, 140
BseMII CTCAG 2 cut(s) 183, 835
BseNI ACTGG 2 cut(s) 438, 660
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 63, 307, 343, 988
Bsh1236I CGCG 4 cut(s) 141, 156, 167, 309
Bsh1285I CGRYCG 1 cut(s) 915
BshFI GGCC 4 cut(s) 144, 159, 623, 785
BshVI ATCGAT 1 cut(s) 751
BsiEI CGRYCG 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 1 cut(s) 873
BsiSI CCGG 4 cut(s) 423, 778, 854, 1092
BslI CCNNNNNNNGG 3 cut(s) 67, 96, 140
BsmAI GTCTC 1 cut(s) 1065
BsmI GAATGC 1 cut(s) 833
BsnI GGCC 4 cut(s) 144, 159, 623, 785
BsoBI CYCGRG 1 cut(s) 873
Bsp1286I GDGCHC 2 cut(s) 8, 822
Bsp13I TCCGGA 1 cut(s) 777
Bsp143I GATC 4 cut(s) 679, 877, 912, 1020
BspANI GGCC 4 cut(s) 144, 159, 623, 785
BspCNI CTCAG 2 cut(s) 184, 834
BspDI ATCGAT 1 cut(s) 751
BspEI TCCGGA 1 cut(s) 777
BspFNI CGCG 4 cut(s) 141, 156, 167, 309
BspLI GGNNCC 2 cut(s) 270, 879
BspPI GGATC 3 cut(s) 872, 885, 1015
BsrBI CCGCTC 1 cut(s) 545
BsrFI RCCGGY 1 cut(s) 853
BsrI ACTGG 2 cut(s) 438, 660
BssAI RCCGGY 1 cut(s) 853
BssECI CCNNGG 6 cut(s) 65, 139, 154, 574, 1053, 1092
BssMI GATC 4 cut(s) 679, 877, 912, 1020
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 65, 574
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 1025
Bst4CI ACNGT 2 cut(s) 337, 805
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 1045
BstC8I GCNNGC 2 cut(s) 62, 621
BstDEI CTNAG 3 cut(s) 192, 821, 1085
BstDSI CCRYGG 2 cut(s) 139, 154
BstF5I GGATG 4 cut(s) 18, 36, 135, 205
BstFNI CGCG 4 cut(s) 141, 156, 167, 309
BstHHI GCGC 2 cut(s) 169, 309
BstKTI GATC 4 cut(s) 682, 880, 915, 1023
BstMAI GTCTC 1 cut(s) 1065
BstMBI GATC 4 cut(s) 679, 877, 912, 1020
BstMCI CGRYCG 1 cut(s) 915
BstMWI GCNNNNNNNGC 6 cut(s) 147, 150, 156, 173, 320, 362
BstNI CCWGG 1 cut(s) 1025
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 3 cut(s) 422, 1023, 1091
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 4 cut(s) 141, 156, 167, 309
BstV1I GCAGC 4 cut(s) 63, 307, 343, 988
BstV2I GAAGAC 2 cut(s) 544, 710
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
Bsu15I ATCGAT 1 cut(s) 751
BsuRI GGCC 4 cut(s) 144, 159, 623, 785
BsuTUI ATCGAT 1 cut(s) 751
BtgI CCRYGG 2 cut(s) 139, 154
BtrI CACGTC 1 cut(s) 732
BtsCI GGATG 4 cut(s) 18, 36, 135, 205
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 4 cut(s) 145, 667, 675, 829
Cac8I GCNNGC 2 cut(s) 62, 621
CfoI GCGC 2 cut(s) 169, 309
Cfr10I RCCGGY 1 cut(s) 853
Cfr42I CCGCGG 2 cut(s) 142, 157
ClaI ATCGAT 1 cut(s) 751
CseI GACGC 2 cut(s) 19, 231
Csp6I GTAC 2 cut(s) 487, 521
CviAII CATG 1 cut(s) 708
CviQI GTAC 2 cut(s) 487, 521
DdeI CTNAG 3 cut(s) 192, 821, 1085
DpnI GATC 4 cut(s) 681, 879, 914, 1022
DpnII GATC 4 cut(s) 679, 877, 912, 1020
DraI TTTAAA 1 cut(s) 388
EaeI YGGCCR 3 cut(s) 142, 157, 621
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 2 cut(s) 65, 574
Eco24I GRGCYC 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 3 cut(s) 65, 201, 575
Eco88I CYCGRG 1 cut(s) 873
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 1023
EcoT14I CCWWGG 2 cut(s) 65, 574
EcoT38I GRGCYC 1 cut(s) 822
ErhI CCWWGG 2 cut(s) 65, 574
FaeI CATG 1 cut(s) 711
FatI CATG 1 cut(s) 707
FauI CCCGC 2 cut(s) 65, 943
FblI GTMKAC 2 cut(s) 453, 843
Fnu4HI GCNGC 9 cut(s) 77, 142, 151, 154, 157, 321, 357, 624, 977
FokI GGATG 4 cut(s) 5, 23, 122, 212
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 9 cut(s) 77, 142, 151, 154, 157, 321, 357, 624, 977
FspBI CTAG 4 cut(s) 66, 183, 476, 1126
GlaI GCGC 2 cut(s) 168, 308
GluI GCNGC 9 cut(s) 77, 142, 151, 154, 157, 321, 357, 624, 977
GsuI CTGGAG 2 cut(s) 455, 561
HaeIII GGCC 4 cut(s) 144, 159, 623, 785
HapII CCGG 4 cut(s) 423, 778, 854, 1092
HgaI GACGC 2 cut(s) 19, 231
HhaI GCGC 2 cut(s) 169, 309
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 711
Hin6I GCGC 2 cut(s) 167, 307
HinP1I GCGC 2 cut(s) 167, 307
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 2 cut(s) 312, 442
HinfI GANTC 4 cut(s) 236, 284, 514, 845
HpaII CCGG 4 cut(s) 423, 778, 854, 1092
HphI GGTGA 3 cut(s) 75, 110, 245
Hpy166II GTNNAC 3 cut(s) 34, 454, 844
Hpy188I TCNGA 8 cut(s) 45, 220, 412, 513, 594, 688, 961, 1123
Hpy188III TCNNGA 6 cut(s) 183, 246, 290, 767, 778, 875
Hpy8I GTNNAC 3 cut(s) 34, 454, 844
HpyAV CCTTC 1 cut(s) 775
HpyCH4III ACNGT 2 cut(s) 337, 805
HpyCH4IV ACGT 3 cut(s) 178, 731, 1044
HpyCH4V TGCA 2 cut(s) 176, 976
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 150, 156, 173, 320, 362
HpyF3I CTNAG 3 cut(s) 192, 821, 1085
HpySE526I ACGT 3 cut(s) 178, 731, 1044
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 711
HspAI GCGC 2 cut(s) 167, 307
Kpn2I TCCGGA 1 cut(s) 777
KspI CCGCGG 2 cut(s) 142, 157
Kzo9I GATC 4 cut(s) 679, 877, 912, 1020
LmnI GCTCC 2 cut(s) 436, 542
Lsp1109I GCAGC 4 cut(s) 63, 307, 343, 988
LweI GCATC 1 cut(s) 416
MaeI CTAG 4 cut(s) 66, 183, 476, 1126
MaeII ACGT 3 cut(s) 178, 731, 1044
MaeIII GTNAC 4 cut(s) 243, 727, 824, 868
MalI GATC 4 cut(s) 681, 879, 914, 1022
MbiI CCGCTC 1 cut(s) 545
MboI GATC 4 cut(s) 679, 877, 912, 1020
MboII GAAGA 6 cut(s) 233, 544, 677, 680, 715, 1126
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 2 cut(s) 8, 822
MluCI AATT 6 cut(s) 94, 297, 501, 691, 736, 984
MlyI GAGTC 2 cut(s) 278, 839
MmeI TCCRAC 1 cut(s) 711
MnlI CCTC 6 cut(s) 117, 222, 283, 588, 595, 1048
MroI TCCGGA 1 cut(s) 777
MseI TTAA 5 cut(s) 300, 387, 566, 923, 1103
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 2 cut(s) 141, 156
MspI CCGG 4 cut(s) 423, 778, 854, 1092
MspR9I CCNGG 3 cut(s) 424, 1025, 1093
MunI CAATTG 1 cut(s) 984
Mva1269I GAATGC 1 cut(s) 833
MvaI CCWGG 1 cut(s) 1025
MvnI CGCG 4 cut(s) 141, 156, 167, 309
MwoI GCNNNNNNNGC 6 cut(s) 147, 150, 156, 173, 320, 362
NciI CCSGG 2 cut(s) 424, 1093
NdeII GATC 4 cut(s) 679, 877, 912, 1020
NlaIII CATG 1 cut(s) 711
NlaIV GGNNCC 2 cut(s) 270, 879
NmuCI GTSAC 3 cut(s) 243, 727, 824
NspI RCATGY 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 1050
PctI GAATGC 1 cut(s) 833
PfeI GAWTC 2 cut(s) 236, 514
PfoI TCCNGGA 1 cut(s) 1023
PkrI GCNGC 9 cut(s) 78, 143, 152, 155, 158, 322, 358, 625, 978
Ple19I CGATCG 1 cut(s) 915
PleI GAGTC 2 cut(s) 278, 839
PpsI GAGTC 2 cut(s) 278, 839
Ppu21I YACGTR 1 cut(s) 1045
PshBI ATTAAT 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 1023
PspGI CCWGG 1 cut(s) 1023
PspN4I GGNNCC 2 cut(s) 270, 879
PsuI RGATCY 1 cut(s) 877
PvuI CGATCG 1 cut(s) 915
RsaI GTAC 2 cut(s) 488, 522
RsaNI GTAC 2 cut(s) 487, 521
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 822
SacII CCGCGG 2 cut(s) 142, 157
SalI GTCGAC 1 cut(s) 842
SaqAI TTAA 5 cut(s) 300, 387, 566, 923, 1103
SatI GCNGC 9 cut(s) 77, 142, 151, 154, 157, 321, 357, 624, 977
Sau3AI GATC 4 cut(s) 679, 877, 912, 1020
ScaI AGTACT 2 cut(s) 488, 522
SchI GAGTC 2 cut(s) 278, 839
ScrFI CCNGG 3 cut(s) 424, 1025, 1093
SduI GDGCHC 2 cut(s) 8, 822
SfaNI GCATC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 336
Sfr303I CCGCGG 2 cut(s) 142, 157
SgrBI CCGCGG 2 cut(s) 142, 157
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 6 cut(s) 94, 297, 501, 691, 736, 984
SspMI CTAG 4 cut(s) 66, 183, 476, 1126
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 3 cut(s) 422, 1023, 1091
StyI CCWWGG 2 cut(s) 65, 574
TaaI ACNGT 2 cut(s) 337, 805
TaiI ACGT 3 cut(s) 181, 734, 1047
TaqI TCGA 3 cut(s) 517, 751, 843
TasI AATT 6 cut(s) 94, 297, 501, 691, 736, 984
TatI WGTACW 2 cut(s) 486, 520
TauI GCSGC 5 cut(s) 144, 153, 156, 159, 626
TfiI GAWTC 2 cut(s) 236, 514
Tru1I TTAA 5 cut(s) 300, 387, 566, 923, 1103
Tru9I TTAA 5 cut(s) 300, 387, 566, 923, 1103
TscAI CASTG 4 cut(s) 152, 667, 682, 829
TseFI GTSAC 3 cut(s) 243, 727, 824
TseI GCWGC 4 cut(s) 76, 320, 356, 976
Tsp45I GTSAC 3 cut(s) 243, 727, 824
TspDTI ATGAA 3 cut(s) 103, 874, 1127
TspGWI ACGGA 3 cut(s) 4, 408, 545
TspRI CASTG 4 cut(s) 152, 667, 682, 829
VspI ATTAAT 1 cut(s) 566
XbaI TCTAGA 1 cut(s) 182
XceI RCATGY 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 2 cut(s) 453, 843
XspI CTAG 4 cut(s) 66, 183, 476, 1126
ZrmI AGTACT 2 cut(s) 488, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.