pycom04g20810

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
22243881 .. 22245593
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g20810.4

Sequence Viewer

Length: 1092 bp
ATGGCTAGCTCATTGGCCATTTTTTGTGTGGTCATGGCGTTGGGAATGTTGAGTTATGGGGCTGAGGCTCGTGCCTTTTTTGTGTTTGGAGACTCACTGGTCGACAATGGTAACAACAACTACTTAGCGACCAGTGCTCGTGCCGACTCTCCTCCTTACGGCATTGACTATCCCAACCGTCAACCCACCGGCCGTTTCTCCAATGGCCTCACCATTCCTGACTATATCAGTCAGAATCTTGGTGCAGAACCTACATTGCCATACTTGAGTCCACAGCTCACAGGGCAAAAGCTACTAGTTGGTGCAAACTTTGCCTCCGCTGGCATTGGAATTCTCAATGACACTGGGGTTCAGTTTGCAAATATAATCAGAATGCCATTGCAATTGCTAAACTTCCAACAATACCAGCAAAGGTTGTCTACCCAAATCGGACCTCAACGGACCAAACAGCTCGTAAATCAAGCACTCGTCCTCCTCACCGTCGGCGGCAACGATTTTGTCAACAACTACTACCTAGTGCCTTTCTCCGCAAGATCTCGCCAGTTTTCTCTGCCAGACTATGTCAAATACCTCATTTCCGAGCTCCGAAAAATTCTCTTGAAAATGTATGATCTTGGAGCACGAAGGGTTTTGGTGACGGGGACAGGACCGATGGGCTGCGTGCCTGCTGAATTGGCCATGAGAAGCAGGAATGGAGAATGCGCAGCAGAGCTGCAACGAGCGTCGGCTCTGTACAACCCGCAACTCATTCAGATGCTGAGATCAGTCAACAGCCAACTCGGTTCTGATGTCTTCGTTGCTGCCAACGTACAGGAGACCCGCAATGACTTCATCAGGAACCCTCAAGCATTTGGATTTACTACATCAAAGATTGCATGCTGTGGGCAAGGACCTTACAATGGCTTGGGGCTGTGCACAAGAGCTTCCAATTTGTGCCCGAACCGCGACCTATACGCTTTCTGGGATGCATTTCATCCGTCCGAAAAGGGGAACACATGTCGATTGATCGTTGAGAATATTTTGACAGGGGATGAAAAGTACATGTACCCCATGAATCTTAGCACCATCTTGGCTTTGGATTCCAGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

39.92

Weight (kDa)

8.72

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc16I TGCGCA 1 cut(s) 703
AccI GTMKAC 2 cut(s) 102, 419
AccII CGCG 1 cut(s) 945
AciI CCGC 6 cut(s) 318, 486, 528, 740, 820, 943
AcoI YGGCCR 3 cut(s) 15, 190, 675
AcsI RAATTY 2 cut(s) 330, 591
AfaI GTAC 4 cut(s) 734, 810, 1040, 1046
AfiI CCNNNNNNNGG 3 cut(s) 158, 899, 987
AflIII ACRYGT 2 cut(s) 995, 1041
AgsI TTSAA 1 cut(s) 601
AhlI ACTAGT 1 cut(s) 295
AjnI CCWGG 1 cut(s) 1082
AluBI AGCT 7 cut(s) 9, 277, 292, 451, 583, 712, 923
AluI AGCT 7 cut(s) 9, 277, 292, 451, 583, 712, 923
Alw21I GWGCWC 4 cut(s) 139, 585, 622, 917
Alw26I GTCTC 2 cut(s) 84, 809
Alw44I GTGCAC 1 cut(s) 913
AlwNI CAGNNNCTG 1 cut(s) 757
AoxI GGCC 4 cut(s) 15, 190, 205, 675
ApaLI GTGCAC 1 cut(s) 913
ApeKI GCWGC 4 cut(s) 657, 704, 712, 800
ApoI RAATTY 2 cut(s) 330, 591
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 5 cut(s) 431, 441, 647, 890, 1086
AsuHPI GGTGA 3 cut(s) 202, 469, 646
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 5 cut(s) 431, 441, 647, 890, 1086
BaeGI GKGCMC 2 cut(s) 917, 938
BalI TGGCCA 2 cut(s) 17, 677
BanII GRGCYC 1 cut(s) 585
BauI CACGAG 2 cut(s) 69, 138
BbsI GAAGAC 1 cut(s) 784
Bbv12I GWGCWC 4 cut(s) 139, 585, 622, 917
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 4 cut(s) 644, 699, 716, 787
BccI CCATC 2 cut(s) 646, 1073
BceAI ACGGC 2 cut(s) 175, 177
BciT130I CCWGG 1 cut(s) 1084
BcoDI GTCTC 2 cut(s) 84, 809
BcuI ACTAGT 1 cut(s) 295
BfaI CTAG 3 cut(s) 6, 296, 515
BglII AGATCT 1 cut(s) 533
BisI GCNGC 5 cut(s) 487, 658, 705, 713, 801
BlsI GCNGC 5 cut(s) 488, 659, 706, 714, 802
Bme1390I CCNGG 1 cut(s) 1084
Bme18I GGWCC 5 cut(s) 431, 441, 647, 890, 1086
BmgT120I GGNCC 5 cut(s) 431, 441, 647, 890, 1086
BmiI GGNNCC 1 cut(s) 839
BmrFI CCNGG 1 cut(s) 1084
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 744, 955
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 784
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 286, 828
BsaI GGTCTC 1 cut(s) 809
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 456, 486
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 899, 987
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 4 cut(s) 102, 132, 349, 541
Bse3DI GCAATG 3 cut(s) 254, 377, 829
BseBI CCWGG 1 cut(s) 1084
BseGI GGATG 3 cut(s) 970, 973, 1036
BseLI CCNNNNNNNGG 3 cut(s) 158, 899, 987
BseMI GCAATG 3 cut(s) 254, 377, 829
BseMII CTCAG 2 cut(s) 54, 749
BseNI ACTGG 4 cut(s) 102, 132, 349, 541
BseRI GAGGAG 2 cut(s) 141, 464
BseSI GKGCMC 2 cut(s) 917, 938
BseX3I CGGCCG 1 cut(s) 190
BseXI GCAGC 4 cut(s) 644, 699, 716, 787
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 945
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 4 cut(s) 17, 192, 207, 677
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 4 cut(s) 139, 585, 622, 917
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 3 cut(s) 158, 899, 987
BsmAI GTCTC 2 cut(s) 84, 809
BsmFI GGGAC 1 cut(s) 655
BsmI GAATGC 2 cut(s) 378, 704
BsnI GGCC 4 cut(s) 17, 192, 207, 677
Bso31I GGTCTC 1 cut(s) 809
Bsp1286I GDGCHC 5 cut(s) 139, 585, 622, 917, 938
Bsp1407I TGTACA 1 cut(s) 732
Bsp143I GATC 4 cut(s) 533, 610, 761, 1005
BspACI CCGC 6 cut(s) 318, 486, 528, 740, 820, 943
BspANI GGCC 4 cut(s) 17, 192, 207, 677
BspCNI CTCAG 2 cut(s) 55, 750
BspFNI CGCG 1 cut(s) 945
BspLI GGNNCC 1 cut(s) 839
BspOI GCTAGC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 809
BsrDI GCAATG 3 cut(s) 254, 377, 829
BsrFI RCCGGY 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 732
BsrI ACTGG 4 cut(s) 102, 132, 349, 541
BssAI RCCGGY 1 cut(s) 188
BssMI GATC 4 cut(s) 533, 610, 761, 1005
BssSI CACGAG 2 cut(s) 69, 138
Bst2BI CACGAG 2 cut(s) 69, 138
Bst2UI CCWGG 1 cut(s) 1084
Bst4CI ACNGT 2 cut(s) 179, 481
BstAPI GCANNNNNTGC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 732
BstC8I GCNNGC 5 cut(s) 7, 322, 662, 666, 877
BstDEI CTNAG 4 cut(s) 63, 124, 758, 1058
BstF5I GGATG 3 cut(s) 970, 973, 1036
BstFNI CGCG 1 cut(s) 945
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 4 cut(s) 536, 613, 764, 1008
BstMAI GTCTC 2 cut(s) 84, 809
BstMBI GATC 4 cut(s) 533, 610, 761, 1005
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 5 cut(s) 134, 283, 311, 674, 942
BstNI CCWGG 1 cut(s) 1084
BstNSI RCATGY 3 cut(s) 879, 999, 1045
BstSCI CCNGG 1 cut(s) 1082
BstSLI GKGCMC 2 cut(s) 917, 938
BstUI CGCG 1 cut(s) 945
BstV1I GCAGC 4 cut(s) 644, 699, 716, 787
BstV2I GAAGAC 1 cut(s) 784
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BstZI CGGCCG 1 cut(s) 190
BsuRI GGCC 4 cut(s) 17, 192, 207, 677
BtsCI GGATG 3 cut(s) 970, 973, 1036
BtsIMutI CAGTG 3 cut(s) 95, 139, 342
Cac8I GCNNGC 5 cut(s) 7, 322, 662, 666, 877
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 1 cut(s) 704
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 5 cut(s) 431, 441, 647, 890, 1086
CseI GACGC 1 cut(s) 711
Csp6I GTAC 4 cut(s) 733, 809, 1039, 1045
CviAII CATG 6 cut(s) 34, 679, 876, 996, 1042, 1051
CviQI GTAC 4 cut(s) 733, 809, 1039, 1045
DdeI CTNAG 4 cut(s) 63, 124, 758, 1058
DpnI GATC 4 cut(s) 535, 612, 763, 1007
DpnII GATC 4 cut(s) 533, 610, 761, 1005
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 3 cut(s) 15, 190, 675
EagI CGGCCG 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 583
EclXI CGGCCG 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 809
Eco47I GGWCC 5 cut(s) 431, 441, 647, 890, 1086
Eco52I CGGCCG 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 583
EcoO109I RGGNCCY 2 cut(s) 890, 1086
EcoRI GAATTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 1082
EcoT22I ATGCAT 1 cut(s) 970
EcoT38I GRGCYC 1 cut(s) 585
FaeI CATG 6 cut(s) 37, 682, 879, 999, 1045, 1054
FaqI GGGAC 1 cut(s) 655
FatI CATG 6 cut(s) 33, 678, 875, 995, 1041, 1050
FauI CCCGC 2 cut(s) 747, 827
FblI GTMKAC 2 cut(s) 102, 419
Fnu4HI GCNGC 5 cut(s) 487, 658, 705, 713, 801
FokI GGATG 3 cut(s) 960, 977, 1043
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 5 cut(s) 487, 658, 705, 713, 801
FspBI CTAG 3 cut(s) 6, 296, 515
FspI TGCGCA 1 cut(s) 703
GlaI GCGC 1 cut(s) 703
GluI GCNGC 5 cut(s) 487, 658, 705, 713, 801
HaeIII GGCC 4 cut(s) 17, 192, 207, 677
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 711
HhaI GCGC 1 cut(s) 704
Hin1II CATG 6 cut(s) 37, 682, 879, 999, 1045, 1054
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 4 cut(s) 103, 182, 502, 769
HindII GTYRAC 4 cut(s) 103, 182, 502, 769
HinfI GANTC 6 cut(s) 92, 146, 235, 268, 1054, 1079
HpaII CCGG 1 cut(s) 189
HphI GGTGA 3 cut(s) 202, 469, 646
Hpy166II GTNNAC 7 cut(s) 103, 182, 272, 420, 502, 769, 915
Hpy188I TCNGA 8 cut(s) 234, 371, 431, 580, 587, 753, 787, 982
Hpy188III TCNNGA 3 cut(s) 218, 598, 835
Hpy8I GTNNAC 7 cut(s) 103, 182, 272, 420, 502, 769, 915
Hpy99I CGWCG 2 cut(s) 485, 727
HpyAV CCTTC 1 cut(s) 618
HpyCH4III ACNGT 2 cut(s) 179, 481
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 8 cut(s) 245, 305, 359, 382, 715, 875, 915, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 283, 311, 674, 942
HpyF3I CTNAG 4 cut(s) 63, 124, 758, 1058
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 6 cut(s) 37, 682, 879, 999, 1045, 1054
HspAI GCGC 1 cut(s) 702
Kzo9I GATC 4 cut(s) 533, 610, 761, 1005
LmnI GCTCC 2 cut(s) 588, 617
Lsp1109I GCAGC 4 cut(s) 644, 699, 716, 787
LweI GCATC 2 cut(s) 744, 955
MaeI CTAG 3 cut(s) 6, 296, 515
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 2 cut(s) 110, 634
MalI GATC 4 cut(s) 535, 612, 763, 1007
MboI GATC 4 cut(s) 533, 610, 761, 1005
MboII GAAGA 1 cut(s) 784
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 5 cut(s) 139, 585, 622, 917, 938
MlsI TGGCCA 2 cut(s) 17, 677
MluCI AATT 5 cut(s) 330, 383, 591, 671, 928
MluNI TGGCCA 2 cut(s) 17, 677
MlyI GAGTC 3 cut(s) 86, 140, 277
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 9 cut(s) 58, 162, 218, 325, 444, 482, 485, 581, 852
Mox20I TGGCCA 2 cut(s) 17, 677
Mph1103I ATGCAT 1 cut(s) 970
MscI TGGCCA 2 cut(s) 17, 677
MslI CAYNNNNRTG 1 cut(s) 752
Msp20I TGGCCA 2 cut(s) 17, 677
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 1084
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 2 cut(s) 378, 704
MvaI CCWGG 1 cut(s) 1084
MvnI CGCG 1 cut(s) 945
MwoI GCNNNNNNNGC 5 cut(s) 134, 283, 311, 674, 942
NdeII GATC 4 cut(s) 533, 610, 761, 1005
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 6 cut(s) 37, 682, 879, 999, 1045, 1054
NlaIV GGNNCC 1 cut(s) 839
NmuCI GTSAC 1 cut(s) 634
NsbI TGCGCA 1 cut(s) 703
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 3 cut(s) 879, 999, 1045
PaeI GCATGC 1 cut(s) 879
PciI ACATGT 2 cut(s) 995, 1041
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 2 cut(s) 378, 704
PfeI GAWTC 3 cut(s) 235, 1054, 1079
PflFI GACNNNGTC 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 1082
PkrI GCNGC 5 cut(s) 488, 659, 706, 714, 802
PleI GAGTC 3 cut(s) 86, 140, 276
PpsI GAGTC 3 cut(s) 86, 140, 276
PpuMI RGGWCCY 2 cut(s) 890, 1086
PscI ACATGT 2 cut(s) 995, 1041
Psp124BI GAGCTC 1 cut(s) 585
Psp5II RGGWCCY 2 cut(s) 890, 1086
Psp6I CCWGG 1 cut(s) 1082
PspGI CCWGG 1 cut(s) 1082
PspN4I GGNNCC 1 cut(s) 839
PspPI GGNCC 5 cut(s) 431, 441, 647, 890, 1086
PspPPI RGGWCCY 2 cut(s) 890, 1086
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 560
RsaI GTAC 4 cut(s) 734, 810, 1040, 1046
RsaNI GTAC 4 cut(s) 733, 809, 1039, 1045
RseI CAYNNNNRTG 1 cut(s) 752
SacI GAGCTC 1 cut(s) 585
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 5 cut(s) 487, 658, 705, 713, 801
Sau3AI GATC 4 cut(s) 533, 610, 761, 1005
Sau96I GGNCC 5 cut(s) 431, 441, 647, 890, 1086
SchI GAGTC 3 cut(s) 86, 140, 277
ScrFI CCNGG 1 cut(s) 1084
SduI GDGCHC 5 cut(s) 139, 585, 622, 917, 938
SfaNI GCATC 2 cut(s) 744, 955
SinI GGWCC 5 cut(s) 431, 441, 647, 890, 1086
SmiMI CAYNNNNRTG 1 cut(s) 752
SmlI CTYRAG 2 cut(s) 265, 843
SmoI CTYRAG 2 cut(s) 265, 843
SpeI ACTAGT 1 cut(s) 295
SphI GCATGC 1 cut(s) 879
Sse9I AATT 5 cut(s) 330, 383, 591, 671, 928
SsiI CCGC 6 cut(s) 318, 486, 528, 740, 820, 943
SspI AATATT 1 cut(s) 1018
SspMI CTAG 3 cut(s) 6, 296, 515
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 1082
TaaI ACNGT 2 cut(s) 179, 481
TaiI ACGT 1 cut(s) 810
TaqI TCGA 2 cut(s) 102, 1000
TaqII GACCGA 1 cut(s) 664
TasI AATT 5 cut(s) 330, 383, 591, 671, 928
TatI WGTACW 2 cut(s) 732, 1038
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 3 cut(s) 235, 1054, 1079
TscAI CASTG 3 cut(s) 102, 139, 349
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 4 cut(s) 657, 704, 712, 800
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 4 cut(s) 820, 962, 1047, 1067
TspGWI ACGGA 2 cut(s) 454, 966
TspRI CASTG 3 cut(s) 102, 139, 349
Tth111I GACNNNGTC 1 cut(s) 560
VneI GTGCAC 1 cut(s) 913
VpaK11BI GGWCC 5 cut(s) 431, 441, 647, 890, 1086
XapI RAATTY 2 cut(s) 330, 591
XceI RCATGY 3 cut(s) 879, 999, 1045
XcmI CCANNNNNNNNNTGG 2 cut(s) 25, 1072
XmiI GTMKAC 2 cut(s) 102, 419
XspI CTAG 3 cut(s) 6, 296, 515
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.