Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007620

Physical Location & Seq

Genomic Coordinates Forward (+)

22270833 .. 22271895

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTAGCTCATTGGCCATTTTTGGTGTGGTCATGGCGTTGGGAATGTTGAGTTATGGGGCTGAGGCTCGTGCCTTTTTGGTGTTTGGAGACTCACTGGTCGACGCTGGTAACAACAACTACTTAGCCACCAGTGCTCGTGCCGACTCTCCTCCTTACGGCATTGACTATCCCACCCGTCGACCCACCGGCCGTTTCTCCAATGGCCTCACCATTCCTGACTATATCAGTCAGAAGCTTGGTGCAGAACCTACATTGCCATACTTGAGTCCACTGCTCACAGGGCAAAAGCTACTAGTTGGTGCAAACTTTGCCTCTGCTGGCATTGGAATTCTTAATGACACTGGGGTTCAGTTTGCAAATATAATCAGAATGCCAGCGCAATTGCTAAACTTCCAACAATACCGGCGAAGGTTGTCTGCCCAAATCGGACCTCAACGGACCAAACAGCTCGTAAATCAAGCACTCGTCCTCCTCACCGTCGGCGGCAACGATTTTGTCAACAACTACTACCTAGTGCCTTCCTCCGCAAGATCTCGCCAGTTTGCTCTGCCAGACTATGTCAGATACCTCATTTCCGAGCTCCGAAAAATTCTCTTGAAAATGTATCGATCTTGGAGCACGAAGGGTTTTGGTGACGGGGACAGGACCGCTAGGCTGCGCGCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

224

Amino Acids

24.47

Weight (kDa)

9.99

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18430
fragaria_vesca	FvH4_6g01380 FvH4_6g01380 FvH4_6g01380
malus_domestica	MD04G1234400.v1.1 MD04G1234500.v1.1 MD04G1234700.v1.1 MD12G1252500.v1.1
prunus_persica	Prupe.6G354200_v2.0.a1
pyrus_communis	pycom04g20810 pycom04g20840 pycom04g20850 pycom12g23190
rosa_chinensis	RchiOBHm_Chr3g0448961
rosa_laevigata	RLG00000025863
rosa_multiflora	Rmu_co8308117.1_g000001 Rmu_sc0003116.1_g000014
rosa_roxburghii	Rroxscaffold_6G00427130
rosa_rugosa	Rorug02G0617300
rosa_samantha	Rh3AG015800 Rh3BG015900 Rh3CG014900 Rh3DG016200
rosa_wichuraiana	Rw3G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccI	GTMKAC	2 cut(s)	102, 181
AccII	CGCG	1 cut(s)	663
AciI	CCGC	3 cut(s)	486, 528, 651
AcoI	YGGCCR	2 cut(s)	15, 190
AcsI	RAATTY	2 cut(s)	330, 591
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	601
AhlI	ACTAGT	1 cut(s)	295
AluBI	AGCT	5 cut(s)	9, 238, 292, 451, 583
AluI	AGCT	5 cut(s)	9, 238, 292, 451, 583
Alw21I	GWGCWC	3 cut(s)	139, 585, 623
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	3 cut(s)	15, 190, 205
ApeKI	GCWGC	1 cut(s)	658
ApoI	RAATTY	2 cut(s)	330, 591
AspLEI	GCGC	3 cut(s)	382, 663, 665
AspS9I	GGNCC	3 cut(s)	431, 441, 648
AsuHPI	GGTGA	3 cut(s)	202, 469, 647
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	3 cut(s)	431, 441, 648
BalI	TGGCCA	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	585
BauI	CACGAG	2 cut(s)	69, 138
Bbv12I	GWGCWC	3 cut(s)	139, 585, 623
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	645
BceAI	ACGGC	2 cut(s)	175, 177
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	4 cut(s)	6, 296, 515, 654
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	487, 659
BlsI	GCNGC	2 cut(s)	488, 660
Bme18I	GGWCC	3 cut(s)	431, 441, 648
BmgT120I	GGNCC	3 cut(s)	431, 441, 648
BmrI	ACTGGG	1 cut(s)	354
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	286
Bsa29I	ATCGAT	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	2 cut(s)	188, 405
Bse1I	ACTGG	4 cut(s)	102, 132, 349, 541
Bse3DI	GCAATG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	4 cut(s)	102, 132, 349, 541
BsePI	GCGCGC	1 cut(s)	661
BseRI	GAGGAG	2 cut(s)	141, 464
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	645
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	663
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	3 cut(s)	17, 192, 207
BshVI	ATCGAT	1 cut(s)	610
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	3 cut(s)	139, 585, 623
BsiSI	CCGG	2 cut(s)	189, 406
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	656
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	17, 192, 207
Bsp1286I	GDGCHC	3 cut(s)	139, 585, 623
Bsp143I	GATC	2 cut(s)	533, 611
BspACI	CCGC	3 cut(s)	486, 528, 651
BspANI	GGCC	3 cut(s)	17, 192, 207
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	663
BspOI	GCTAGC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	254
BsrFI	RCCGGY	2 cut(s)	188, 405
BsrI	ACTGG	4 cut(s)	102, 132, 349, 541
BssAI	RCCGGY	2 cut(s)	188, 405
BssHII	GCGCGC	1 cut(s)	661
BssMI	GATC	2 cut(s)	533, 611
BssSI	CACGAG	2 cut(s)	69, 138
Bst2BI	CACGAG	2 cut(s)	69, 138
Bst4CI	ACNGT	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	5 cut(s)	7, 322, 378, 663, 667
BstDEI	CTNAG	2 cut(s)	63, 124
BstFNI	CGCG	1 cut(s)	663
BstHHI	GCGC	3 cut(s)	382, 663, 665
BstKTI	GATC	2 cut(s)	536, 614
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	533, 611
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 283, 311
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BstZI	CGGCCG	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	17, 192, 207
BsuTUI	ATCGAT	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	4 cut(s)	95, 139, 272, 342
Cac8I	GCNNGC	5 cut(s)	7, 322, 378, 663, 667
CfoI	GCGC	3 cut(s)	382, 663, 665
Cfr10I	RCCGGY	2 cut(s)	188, 405
Cfr13I	GGNCC	3 cut(s)	431, 441, 648
ClaI	ATCGAT	1 cut(s)	610
CseI	GACGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	63, 124
DpnI	GATC	2 cut(s)	535, 613
DpnII	GATC	2 cut(s)	533, 611
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	2 cut(s)	15, 190
EagI	CGGCCG	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	583
EclXI	CGGCCG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	585
Eco47I	GGWCC	3 cut(s)	431, 441, 648
Eco52I	CGGCCG	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	1 cut(s)	37
FaiI	YATR	6 cut(s)	35, 57, 225, 262, 365, 561
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	2 cut(s)	102, 181
Fnu4HI	GCNGC	2 cut(s)	487, 659
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	487, 659
FspBI	CTAG	4 cut(s)	6, 296, 515, 654
GlaI	GCGC	3 cut(s)	381, 662, 664
GluI	GCNGC	2 cut(s)	487, 659
HaeIII	GGCC	3 cut(s)	17, 192, 207
HapII	CCGG	2 cut(s)	189, 406
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	3 cut(s)	382, 663, 665
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	3 cut(s)	380, 661, 663
HinP1I	GCGC	3 cut(s)	380, 661, 663
HincII	GTYRAC	3 cut(s)	103, 182, 502
HindII	GTYRAC	3 cut(s)	103, 182, 502
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	92, 146, 268
HpaII	CCGG	2 cut(s)	189, 406
HphI	GGTGA	3 cut(s)	202, 469, 647
Hpy166II	GTNNAC	4 cut(s)	103, 182, 272, 502
Hpy188I	TCNGA	6 cut(s)	234, 371, 431, 566, 580, 587
Hpy188III	TCNNGA	2 cut(s)	218, 598
Hpy8I	GTNNAC	4 cut(s)	103, 182, 272, 502
Hpy99I	CGWCG	3 cut(s)	107, 183, 485
HpyAV	CCTTC	3 cut(s)	405, 531, 619
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	3 cut(s)	245, 305, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 283, 311
HpyF3I	CTNAG	2 cut(s)	63, 124
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	3 cut(s)	380, 661, 663
Kzo9I	GATC	2 cut(s)	533, 611
LmnI	GCTCC	2 cut(s)	588, 618
Lsp1109I	GCAGC	1 cut(s)	645
MaeI	CTAG	4 cut(s)	6, 296, 515, 654
MaeIII	GTNAC	2 cut(s)	110, 635
MalI	GATC	2 cut(s)	535, 613
MboI	GATC	2 cut(s)	533, 611
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	3 cut(s)	139, 585, 623
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	3 cut(s)	330, 383, 591
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	3 cut(s)	86, 140, 277
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	9 cut(s)	58, 162, 218, 325, 444, 482, 485, 535, 581
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	2 cut(s)	189, 406
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	378
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	134, 283, 311
NdeII	GATC	2 cut(s)	533, 611
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	635
PauI	GCGCGC	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PctI	GAATGC	1 cut(s)	378
PflFI	GACNNNGTC	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	488, 660
PleI	GAGTC	3 cut(s)	86, 140, 276
PpsI	GAGTC	3 cut(s)	86, 140, 276
Psp124BI	GAGCTC	1 cut(s)	585
PspPI	GGNCC	3 cut(s)	431, 441, 648
PsuI	RGATCY	1 cut(s)	533
PsyI	GACNNNGTC	1 cut(s)	560
PteI	GCGCGC	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	585
SalI	GTCGAC	2 cut(s)	101, 180
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	487, 659
Sau3AI	GATC	2 cut(s)	533, 611
Sau96I	GGNCC	3 cut(s)	431, 441, 648
SchI	GAGTC	3 cut(s)	86, 140, 277
SduI	GDGCHC	3 cut(s)	139, 585, 623
SinI	GGWCC	3 cut(s)	431, 441, 648
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
SpeI	ACTAGT	1 cut(s)	295
Sse9I	AATT	3 cut(s)	330, 383, 591
SsiI	CCGC	3 cut(s)	486, 528, 651
SspMI	CTAG	4 cut(s)	6, 296, 515, 654
SstI	GAGCTC	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	481
TaqI	TCGA	3 cut(s)	102, 181, 610
TasI	AATT	3 cut(s)	330, 383, 591
TauI	GCSGC	1 cut(s)	489
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	4 cut(s)	102, 139, 279, 349
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	635
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	4 cut(s)	102, 139, 279, 349
Tth111I	GACNNNGTC	1 cut(s)	560
VpaK11BI	GGWCC	3 cut(s)	431, 441, 648
XapI	RAATTY	2 cut(s)	330, 591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	2 cut(s)	102, 181
XspI	CTAG	4 cut(s)	6, 296, 515, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.