Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007620

Physical Location & Seq

Genomic Coordinates Forward (+)

22271978 .. 22272520

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTGAGATCGATCAACAGCCAACTCGGTTCTAATGTCTTCGTTGCTGCCAACGTACAGGAGACCCGCAATGACTTCATCAAGAACCCTCAAGCATTTGGATTTACTACATCAAAGATTGCATGCTGTGGGCAAGGACCTTACAATGGCTTGGGGCTGTGCACAAGAGCTTCCAATTTGTGCCCGAACCGCGACCTATACGCTTTCTGGGATGCATTTCATCCGTCCGAAAAGGGGAACAGATCGATCGTTGAGAATATTATGACAGGGGATGAAAAGTACATGTACCCCATGAATCTCAGCACCATCTTGGCTTTGGATTCCAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

111

Amino Acids

12.23

Weight (kDa)

7.65

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18430
fragaria_vesca	FvH4_6g01380 FvH4_6g01380 FvH4_6g01380
malus_domestica	MD04G1234400.v1.1 MD04G1234500.v1.1 MD04G1234700.v1.1 MD12G1252500.v1.1
prunus_persica	Prupe.6G354200_v2.0.a1
pyrus_communis	pycom04g20810 pycom04g20840 pycom04g20850 pycom12g23190
rosa_chinensis	RchiOBHm_Chr3g0448961
rosa_laevigata	RLG00000025863
rosa_multiflora	Rmu_co8308117.1_g000001 Rmu_sc0003116.1_g000014
rosa_roxburghii	Rroxscaffold_6G00427130
rosa_rugosa	Rorug02G0617300
rosa_samantha	Rh3AG015800 Rh3BG015900 Rh3CG014900 Rh3DG016200
rosa_wichuraiana	Rw3G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	67, 190
AfaI	GTAC	3 cut(s)	57, 281, 287
AfiI	CCNNNNNNNGG	2 cut(s)	146, 234
AflIII	ACRYGT	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	56
Alw44I	GTGCAC	1 cut(s)	160
ApaLI	GTGCAC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	2 cut(s)	164, 185
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	2 cut(s)	11, 245
BsaI	GGTCTC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 234
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	325
BseCI	ATCGAT	2 cut(s)	11, 245
BseGI	GGATG	3 cut(s)	217, 220, 277
BseLI	CCNNNNNNNGG	2 cut(s)	146, 234
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	313
BseSI	GKGCMC	2 cut(s)	164, 185
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	249
BshVI	ATCGAT	2 cut(s)	11, 245
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	146, 234
BsmAI	GTCTC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	164, 185
Bsp143I	GATC	4 cut(s)	8, 12, 242, 246
BspACI	CCGC	2 cut(s)	67, 190
BspCNI	CTCAG	1 cut(s)	312
BspDI	ATCGAT	2 cut(s)	11, 245
BspFNI	CGCG	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	76
BssMI	GATC	4 cut(s)	8, 12, 242, 246
Bst2UI	CCWGG	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	5, 299
BstF5I	GGATG	3 cut(s)	217, 220, 277
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	11, 15, 245, 249
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	4 cut(s)	8, 12, 242, 246
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	2 cut(s)	126, 286
BstSCI	CCNGG	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	164, 185
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	31
Bsu15I	ATCGAT	2 cut(s)	11, 245
BsuTUI	ATCGAT	2 cut(s)	11, 245
BtsCI	GGATG	3 cut(s)	217, 220, 277
Cac8I	GCNNGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	2 cut(s)	11, 245
Csp6I	GTAC	3 cut(s)	56, 280, 286
CviAII	CATG	3 cut(s)	123, 283, 292
CviJI	RGCY	5 cut(s)	21, 150, 157, 170, 314
CviKI_1	RGCY	5 cut(s)	21, 150, 157, 170, 314
CviQI	GTAC	3 cut(s)	56, 280, 286
DdeI	CTNAG	2 cut(s)	5, 299
DpnI	GATC	4 cut(s)	10, 14, 244, 248
DpnII	GATC	4 cut(s)	8, 12, 242, 246
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	3 cut(s)	126, 286, 295
FaiI	YATR	5 cut(s)	124, 199, 263, 284, 293
FatI	CATG	3 cut(s)	122, 282, 291
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	3 cut(s)	207, 224, 284
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	126, 286, 295
HinfI	GANTC	2 cut(s)	295, 320
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	122, 162, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	2 cut(s)	5, 299
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	126, 286, 295
Kzo9I	GATC	4 cut(s)	8, 12, 242, 246
LpnPI	CCDG	4 cut(s)	44, 193, 252, 310
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	54
MalI	GATC	4 cut(s)	10, 14, 244, 248
MboI	GATC	4 cut(s)	8, 12, 242, 246
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	164, 185
MluCI	AATT	1 cut(s)	175
MnlI	CCTC	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	4 cut(s)	8, 12, 242, 246
NlaIII	CATG	3 cut(s)	126, 286, 295
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	126, 286
PaeI	GCATGC	1 cut(s)	126
PciI	ACATGT	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	295, 320
PfoI	TCCNGGA	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	49
Ple19I	CGATCG	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	137
PscI	ACATGT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	137
PspPPI	RGGWCCY	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	249
RsaI	GTAC	3 cut(s)	57, 281, 287
RsaNI	GTAC	3 cut(s)	56, 280, 286
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	4 cut(s)	8, 12, 242, 246
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	164, 185
SetI	ASST	4 cut(s)	57, 142, 172, 198
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	67, 190
SspI	AATATT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	323
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	11, 245
TasI	AATT	1 cut(s)	175
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	295, 320
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	4 cut(s)	67, 209, 288, 308
TspGWI	ACGGA	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	2 cut(s)	126, 286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.