pycom05g01530

Belongs to the FBPase class 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
1859812 .. 1862754
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01530.5

Sequence Viewer

Length: 1020 bp
ATGGATCACGCAGCCGATGCTCACCGGACGGACTTGATGACCATAACGAGGTTCGTGCTGAATGAGCAGTCCAAGCGCCCTGAGTCGCGCGGTGACTTCACTATCTTGCTCAATCATATTGTTCTTGGCTGCAAGTTTGTCTGCTCTGCAGTCAACAAGGCTGGTCTGGCCAAACTTATCGGGCTTGCTGGAGAGACCAACGTTCAGGGTGAAGAGCAAAAGAAACTGGATGTTCTTTCAAATGAAGTTTTTGTTAAGGCTCTGGTTAGCAGTGGCAGAACCTCTATTCTTGTTTCAGAAGAAGATGAAGAGGCGATTTTCGTGGAGCCAAAATTGCGTGGAAAGTACTGTGTTGTGTTCGATCCACTGGATGGTTCGTCTAACATTGATTGTGCTGTTTCCATTGGAACGATTTTTGGGATTTATGTGGTAAAAGATGGTGAACCTTCTCTTGACGATGTCTTGCAACCTGGAAAGAATATGGTTGCAGCAGGCTACTGCATGTACGGAAGCTCTTGCACGTTGGTGATAAGCACTGGATCTGGAGCTCATGGGTTCACCCTTGATCCTTCTCTCGGGGAGTTCATACTAACTCACCCGGACATCCAGATTCCAAAGAAAGGAAAGATCTATTCAGTGAATGAAGGGAACGCCAAAAATTGGGATGGCCCGACAGCCAAGTATGTGCAAAAGTGCAAGTACCCGGAAGATGGTTCATCCCCGAAGTCGCTAAGATACATTGGAAGCATGGTTGCTGATGTTCATCGGACATTGCTGTATGGCGGTATCTTTTTGTACCCTGCTGATAAGAAGAGCCCAAACGGGAAACTGCGGGTTCTCTACGAAGTCTTCCCAATGTCGTTCTTGTTGGAACAAGCAGGCGGTCAGTCCTTCACTGGCAAGGAACGGGCCCTTGACCTGGTTCCGACCAAGATACACGAGCGCTCTCCGATCTTCCTCGGCAGCTACGACGACGTTGAGGAAATCAAGGCACTCTATGCAGCTGAAGGAAAGAAATGA

Protein Analysis

340

Amino Acids

36.94

Weight (kDa)

5.87

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 371, 660
AccII CGCG 2 cut(s) 88, 90
AciI CCGC 4 cut(s) 90, 783, 832, 882
AclI AACGTT 1 cut(s) 201
AclWI GGATC 4 cut(s) 12, 356, 547, 560
AcoI YGGCCR 1 cut(s) 168
AfaI GTAC 4 cut(s) 347, 506, 701, 797
AfeI AGCGCT 1 cut(s) 944
AfiI CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
AgsI TTSAA 1 cut(s) 240
AjnI CCWGG 2 cut(s) 469, 918
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 4 cut(s) 513, 548, 966, 1004
AluI AGCT 4 cut(s) 513, 548, 966, 1004
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 4 cut(s) 12, 356, 547, 560
Ama87I CYCGRG 1 cut(s) 575
Aor51HI AGCGCT 1 cut(s) 944
AoxI GGCC 3 cut(s) 168, 667, 909
ApaI GGGCCC 1 cut(s) 913
ApeKI GCWGC 5 cut(s) 11, 129, 488, 963, 1001
AspLEI GCGC 3 cut(s) 78, 90, 945
AspS9I GGNCC 3 cut(s) 668, 909, 910
AsuC2I CCSGG 2 cut(s) 599, 704
AsuHPI GGTGA 7 cut(s) 14, 104, 221, 452, 538, 550, 587
AvaI CYCGRG 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 913
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 3 cut(s) 550, 818, 913
BauI CACGAG 1 cut(s) 938
BbsI GAAGAC 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 5 cut(s) 23, 116, 500, 975, 1013
BccI CCATC 4 cut(s) 365, 431, 659, 704
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 2 cut(s) 471, 920
BcnI CCSGG 2 cut(s) 599, 704
BcoDI GTCTC 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 2 cut(s) 79, 946
BglII AGATCT 1 cut(s) 627
BisI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
BlsI GCNGC 5 cut(s) 13, 131, 490, 965, 1003
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 4 cut(s) 471, 599, 704, 920
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 668, 909, 910
BmiI GGNNCC 3 cut(s) 327, 911, 924
BmrFI CCNGG 4 cut(s) 471, 599, 704, 920
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 841
BpmI CTGGAG 2 cut(s) 210, 564
BpuMI CCSGG 2 cut(s) 599, 704
BsaBI GATNNNNATC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 958
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
Bse1I ACTGG 4 cut(s) 231, 372, 541, 901
Bse3DI GCAATG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 2 cut(s) 471, 920
BseDI CCNNGG 1 cut(s) 958
BseGI GGATG 5 cut(s) 235, 376, 603, 670, 716
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 4 cut(s) 231, 372, 541, 901
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 5 cut(s) 23, 116, 500, 975, 1013
Bsh1236I CGCG 2 cut(s) 88, 90
BshFI GGCC 3 cut(s) 170, 669, 911
BsiHKAI GWGCWC 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 3 cut(s) 25, 599, 704
BslI CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 3 cut(s) 170, 669, 911
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 575
Bsp120I GGGCCC 1 cut(s) 909
Bsp1286I GDGCHC 3 cut(s) 550, 818, 913
Bsp143I GATC 6 cut(s) 4, 361, 539, 565, 627, 951
BspACI CCGC 4 cut(s) 90, 783, 832, 882
BspANI GGCC 3 cut(s) 170, 669, 911
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 2 cut(s) 88, 90
BspLI GGNNCC 3 cut(s) 327, 911, 924
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 4 cut(s) 12, 356, 547, 560
BspQI GCTCTTC 2 cut(s) 207, 806
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 770
BsrI ACTGG 4 cut(s) 231, 372, 541, 901
BssECI CCNNGG 1 cut(s) 958
BssMI GATC 6 cut(s) 4, 361, 539, 565, 627, 951
BssSI CACGAG 1 cut(s) 938
Bst2BI CACGAG 1 cut(s) 938
Bst2UI CCWGG 2 cut(s) 471, 920
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 3 cut(s) 207, 303, 806
BstAPI GCANNNNNTGC 2 cut(s) 17, 998
BstC8I GCNNGC 3 cut(s) 186, 493, 880
BstDEI CTNAG 2 cut(s) 81, 731
BstF5I GGATG 5 cut(s) 235, 376, 603, 670, 716
BstFNI CGCG 2 cut(s) 88, 90
BstH2I RGCGCY 2 cut(s) 79, 946
BstHHI GCGC 3 cut(s) 78, 90, 945
BstKTI GATC 6 cut(s) 7, 364, 542, 568, 630, 954
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 6 cut(s) 4, 361, 539, 565, 627, 951
BstMWI GCNNNNNNNGC 6 cut(s) 17, 64, 73, 167, 334, 998
BstNI CCWGG 2 cut(s) 471, 920
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 4 cut(s) 469, 597, 702, 918
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 2 cut(s) 88, 90
BstV1I GCAGC 5 cut(s) 23, 116, 500, 975, 1013
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 2 cut(s) 539, 627
BstYI RGATCY 2 cut(s) 539, 627
BsuRI GGCC 3 cut(s) 170, 669, 911
BtsCI GGATG 5 cut(s) 235, 376, 603, 670, 716
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 5 cut(s) 277, 365, 534, 642, 894
Cac8I GCNNGC 3 cut(s) 186, 493, 880
CfoI GCGC 3 cut(s) 78, 90, 945
Cfr13I GGNCC 3 cut(s) 668, 909, 910
CsiI ACCWGGT 1 cut(s) 918
Csp6I GTAC 4 cut(s) 346, 505, 700, 796
CviAII CATG 3 cut(s) 502, 551, 748
CviQI GTAC 4 cut(s) 346, 505, 700, 796
DdeI CTNAG 2 cut(s) 81, 731
DpnI GATC 6 cut(s) 6, 363, 541, 567, 629, 953
DpnII GATC 6 cut(s) 4, 361, 539, 565, 627, 951
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 3 cut(s) 207, 303, 806
EarI CTCTTC 3 cut(s) 207, 303, 806
Ecl136II GAGCTC 1 cut(s) 548
Eco24I GRGCYC 3 cut(s) 550, 818, 913
Eco31I GGTCTC 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 944
Eco53kI GAGCTC 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 910
EcoRII CCWGG 2 cut(s) 469, 918
EcoT38I GRGCYC 3 cut(s) 550, 818, 913
FaeI CATG 3 cut(s) 505, 554, 751
FatI CATG 3 cut(s) 501, 550, 747
FauI CCCGC 1 cut(s) 825
Fnu4HI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
FokI GGATG 5 cut(s) 242, 383, 590, 677, 703
FriOI GRGCYC 3 cut(s) 550, 818, 913
Fsp4HI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
GlaI GCGC 3 cut(s) 77, 89, 944
GluI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
GsuI CTGGAG 2 cut(s) 210, 564
HaeII RGCGCY 2 cut(s) 79, 946
HaeIII GGCC 3 cut(s) 170, 669, 911
HapII CCGG 3 cut(s) 25, 599, 704
HhaI GCGC 3 cut(s) 78, 90, 945
Hin1II CATG 3 cut(s) 505, 554, 751
Hin6I GCGC 3 cut(s) 76, 88, 943
HinP1I GCGC 3 cut(s) 76, 88, 943
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 83, 610
HpaII CCGG 3 cut(s) 25, 599, 704
HphI GGTGA 7 cut(s) 14, 104, 221, 452, 538, 550, 587
Hpy166II GTNNAC 3 cut(s) 154, 443, 558
Hpy188I TCNGA 4 cut(s) 298, 768, 927, 951
Hpy188III TCNNGA 3 cut(s) 452, 543, 607
Hpy8I GTNNAC 3 cut(s) 154, 443, 558
Hpy99I CGWCG 2 cut(s) 974, 977
HpyAV CCTTC 5 cut(s) 456, 579, 638, 901, 1001
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 3 cut(s) 201, 521, 975
HpyCH4V TGCA 9 cut(s) 132, 149, 466, 488, 501, 519, 688, 696, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 64, 73, 167, 334, 998
HpyF3I CTNAG 2 cut(s) 81, 731
HpySE526I ACGT 3 cut(s) 201, 521, 975
Hsp92II CATG 3 cut(s) 505, 554, 751
HspAI GCGC 3 cut(s) 76, 88, 943
Kzo9I GATC 6 cut(s) 4, 361, 539, 565, 627, 951
LguI GCTCTTC 2 cut(s) 207, 806
LmnI GCTCC 2 cut(s) 325, 545
Lsp1109I GCAGC 5 cut(s) 23, 116, 500, 975, 1013
LweI GCATC 1 cut(s) 7
MabI ACCWGGT 1 cut(s) 918
MaeII ACGT 3 cut(s) 201, 521, 975
MaeIII GTNAC 1 cut(s) 92
MalI GATC 6 cut(s) 6, 363, 541, 567, 629, 953
MboI GATC 6 cut(s) 4, 361, 539, 565, 627, 951
MboII GAAGA 8 cut(s) 224, 311, 314, 320, 719, 823, 841, 946
MflI RGATCY 2 cut(s) 539, 627
MhlI GDGCHC 3 cut(s) 550, 818, 913
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 2 cut(s) 332, 658
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 849, 950
MnlI CCTC 5 cut(s) 42, 292, 304, 968, 973
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 1004
MspI CCGG 3 cut(s) 25, 599, 704
MspR9I CCNGG 4 cut(s) 471, 599, 704, 920
MvaI CCWGG 2 cut(s) 471, 920
MvnI CGCG 2 cut(s) 88, 90
MwoI GCNNNNNNNGC 6 cut(s) 17, 64, 73, 167, 334, 998
NciI CCSGG 2 cut(s) 599, 704
NdeII GATC 6 cut(s) 4, 361, 539, 565, 627, 951
NlaIII CATG 3 cut(s) 505, 554, 751
NlaIV GGNNCC 3 cut(s) 327, 911, 924
NmeAIII GCCGAG 1 cut(s) 939
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 505
OliI CACNNNNGTG 1 cut(s) 524
PciSI GCTCTTC 2 cut(s) 207, 806
PcsI WCGNNNNNNNCGW 1 cut(s) 966
PfeI GAWTC 1 cut(s) 610
PflFI GACNNNGTC 1 cut(s) 458
PflMI CCANNNNNTGG 2 cut(s) 371, 660
PkrI GCNGC 5 cut(s) 13, 131, 490, 965, 1003
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 550
Psp1406I AACGTT 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 469, 918
PspGI CCWGG 2 cut(s) 469, 918
PspN4I GGNNCC 3 cut(s) 327, 911, 924
PspOMI GGGCCC 1 cut(s) 909
PspPI GGNCC 3 cut(s) 668, 909, 910
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 539, 627
PsyI GACNNNGTC 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 4 cut(s) 347, 506, 701, 797
RsaNI GTAC 4 cut(s) 346, 505, 700, 796
RseI CAYNNNNRTG 1 cut(s) 524
SacI GAGCTC 1 cut(s) 550
SapI GCTCTTC 2 cut(s) 207, 806
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
Sau3AI GATC 6 cut(s) 4, 361, 539, 565, 627, 951
Sau96I GGNCC 3 cut(s) 668, 909, 910
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 4 cut(s) 471, 599, 704, 920
SduI GDGCHC 3 cut(s) 550, 818, 913
SexAI ACCWGGT 1 cut(s) 918
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 2 cut(s) 332, 658
SsiI CCGC 4 cut(s) 90, 783, 832, 882
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 4 cut(s) 469, 597, 702, 918
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 3 cut(s) 204, 524, 978
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 332, 658
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 610
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 5 cut(s) 277, 372, 541, 642, 901
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 5 cut(s) 11, 129, 488, 963, 1001
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 6 cut(s) 258, 321, 574, 657, 705, 752
TspGWI ACGGA 2 cut(s) 44, 522
TspRI CASTG 5 cut(s) 277, 372, 541, 642, 901
Tth111I GACNNNGTC 1 cut(s) 458
Van91I CCANNNNNTGG 2 cut(s) 371, 660
XceI RCATGY 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.