Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Reverse (-)

39571870 .. 39575874

Gene Structure 4005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATCATGAAGCTGATGCCTACCGTACTGACTTGATGACCATGACTCGGTTCGTGCTGAATGAGCAGTCCAAGTACCCTGAGTCACGCGGAGATTTCACCATCTTGCTCAGTCATATTGTTCTTGGATGCAAGTTTGTGTGCTCTGCTGTCAATAAGGCTGGTCTGGCTAAACTTATTGGCCTTGCTGGAGAGACCAATGTTCAGGGTGAAGAGCAAAAGAAACTGGATGTGCTTTCAAATGAAGTTTTTGTGAAGGCTCTGGTTAGCAGTGGTCGAACTGTAAGTTATTACATTTTTTGTTTAAGAAATCAGAAAAGCTGGGTTTTTGAGGGCCAATATTCTGTTTACATTTTGGGGGGTTTTTCTTGGCAGTGTATCCTTGTTTCGGAGGAAGATGAAGATGCCATATTTGTGGAGTCATCAAAGCGCGGAAAGTACTGTGTTGTCTTTGATCCATTGGATGGTTCGTCTAACATTGATTGTGGGGTTTCCATCGGCACGATATTTGGGATTTATGTGCTTAACGAAGGCAAGGAAGCTTCTTTAGATGATGTCTTGCAACCTGGAAAGAATATGTTGGCAGCAGGCTATTGCATGTACGGAAGTTCTTGCACGTTTGTGTTGACTACTGGAAGTGGAGTTCATGGTTTCACCCTTGATCCATCTCTTGGGGAGTTCATACTAACTCACCCAGACATCAAGATTCCGAAGAAAGGAAAGATCTATTCTGTGAACGAAGGGAATGCTAAGAACTGGGATGGTCCAACAGCTAAGTATGTGGATAAATGCAAATTCCCAACAGATGGTTCTTCACCAAAGTCTCTAAGATACATTGGAAGGTACTCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009311 GO:0009312 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016051 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0030388 GO:0033993 GO:0034284 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046364 GO:0050308 GO:0050896 GO:0071704 GO:0097305 GO:1901135 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

284

Amino Acids

31.2

Weight (kDa)

5.66

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	13 - 95	9.6e-29	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase	PF00316	125 - 232	1.7e-49	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	236 - 281	2.9e-06	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	464, 671, 806
AccII	CGCG	2 cut(s)	90, 432
AciI	CCGC	2 cut(s)	90, 432
AclWI	GGATC	3 cut(s)	12, 449, 656
AcsI	RAATTY	1 cut(s)	794
AfaI	GTAC	5 cut(s)	28, 77, 440, 602, 845
AfiI	CCNNNNNNNGG	6 cut(s)	48, 388, 464, 671, 716, 806
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	793, 825
AleI	CACNNNNGTG	1 cut(s)	620
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	4 cut(s)	14, 321, 542, 773
AluI	AGCT	4 cut(s)	14, 321, 542, 773
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	188, 828
AlwI	GGATC	3 cut(s)	12, 449, 656
AoxI	GGCC	2 cut(s)	181, 334
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	334, 764
AsuHPI	GGTGA	5 cut(s)	91, 221, 646, 683, 807
AvaII	GGWCC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	6 cut(s)	110, 458, 503, 673, 755, 800
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	1 cut(s)	567
BciVI	GTATCC	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	188, 828
BfuI	GTATCC	1 cut(s)	389
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	586
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	2 cut(s)	334, 764
BmrFI	CCNGG	1 cut(s)	567
BmrI	ACTGGG	1 cut(s)	766
BmsI	GCATC	3 cut(s)	7, 119, 394
BmuI	ACTGGG	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	6 cut(s)	48, 388, 464, 671, 716, 806
Bse1I	ACTGG	3 cut(s)	231, 637, 761
BseBI	CCWGG	1 cut(s)	567
BseGI	GGATG	4 cut(s)	134, 235, 469, 766
BseLI	CCNNNNNNNGG	6 cut(s)	48, 388, 464, 671, 716, 806
BseMII	CTCAG	2 cut(s)	72, 124
BseNI	ACTGG	3 cut(s)	231, 637, 761
BseXI	GCAGC	1 cut(s)	596
BseYI	CCCAGC	1 cut(s)	321
Bsh1236I	CGCG	2 cut(s)	90, 432
BshFI	GGCC	2 cut(s)	183, 336
BsiHKAI	GWGCWC	1 cut(s)	146
BslI	CCNNNNNNNGG	6 cut(s)	48, 388, 464, 671, 716, 806
BsmAI	GTCTC	2 cut(s)	188, 828
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	2 cut(s)	183, 336
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	4 cut(s)	4, 454, 661, 723
BspACI	CCGC	2 cut(s)	90, 432
BspANI	GGCC	2 cut(s)	183, 336
BspCNI	CTCAG	2 cut(s)	73, 123
BspFNI	CGCG	2 cut(s)	90, 432
BspHI	TCATGA	1 cut(s)	7
BspPI	GGATC	3 cut(s)	12, 449, 656
BspQI	GCTCTTC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	188
BsrI	ACTGG	3 cut(s)	231, 637, 761
BssMI	GATC	4 cut(s)	4, 454, 661, 723
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	26, 283, 443
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	5 cut(s)	81, 110, 750, 774, 827
BstF5I	GGATG	4 cut(s)	134, 235, 469, 766
BstFNI	CGCG	2 cut(s)	90, 432
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	4 cut(s)	7, 457, 664, 726
BstMAI	GTCTC	2 cut(s)	188, 828
BstMBI	GATC	4 cut(s)	4, 454, 661, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 167
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	565
BstUI	CGCG	2 cut(s)	90, 432
BstV1I	GCAGC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	723
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	183, 336
BtsCI	GGATG	4 cut(s)	134, 235, 469, 766
BtsI	GCAGTG	2 cut(s)	277, 380
BtsIMutI	CAGTG	2 cut(s)	277, 380
Cac8I	GCNNGC	1 cut(s)	589
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	334, 764
Csp6I	GTAC	5 cut(s)	27, 76, 439, 601, 844
CviAII	CATG	4 cut(s)	8, 43, 598, 647
CviQI	GTAC	5 cut(s)	27, 76, 439, 601, 844
DdeI	CTNAG	5 cut(s)	81, 110, 750, 774, 827
DpnI	GATC	4 cut(s)	6, 456, 663, 725
DpnII	GATC	4 cut(s)	4, 454, 661, 723
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	565
FaeI	CATG	4 cut(s)	11, 46, 601, 650
FatI	CATG	4 cut(s)	7, 42, 597, 646
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	4 cut(s)	141, 242, 476, 773
Fsp4HI	GCNGC	1 cut(s)	585
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	585
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	183, 336
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	11, 46, 601, 650
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	4 cut(s)	46, 83, 419, 706
HphI	GGTGA	5 cut(s)	91, 221, 646, 683, 807
Hpy166II	GTNNAC	3 cut(s)	349, 627, 736
Hpy188I	TCNGA	3 cut(s)	315, 391, 711
Hpy188III	TCNNGA	3 cut(s)	8, 703, 849
Hpy8I	GTNNAC	3 cut(s)	349, 627, 736
HpyAV	CCTTC	4 cut(s)	250, 524, 734, 834
HpyCH4III	ACNGT	3 cut(s)	26, 283, 443
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	5 cut(s)	132, 562, 597, 615, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 167
HpyF3I	CTNAG	5 cut(s)	81, 110, 750, 774, 827
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	4 cut(s)	11, 46, 601, 650
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	4, 454, 661, 723
LguI	GCTCTTC	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	3 cut(s)	7, 119, 394
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	4 cut(s)	6, 456, 663, 725
MboI	GATC	4 cut(s)	4, 454, 661, 723
MboII	GAAGA	5 cut(s)	224, 407, 413, 724, 804
MflI	RGATCY	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	794
MlyI	GAGTC	3 cut(s)	40, 92, 428
MmeI	TCCRAC	1 cut(s)	791
MnlI	CCTC	2 cut(s)	325, 385
MseI	TTAA	2 cut(s)	305, 525
MslI	CAYNNNNRTG	2 cut(s)	413, 620
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	2 cut(s)	90, 432
MwoI	GCNNNNNNNGC	2 cut(s)	64, 167
NdeII	GATC	4 cut(s)	4, 454, 661, 723
NlaIII	CATG	4 cut(s)	11, 46, 601, 650
NmuCI	GTSAC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	620
PagI	TCATGA	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	1 cut(s)	706
PflMI	CCANNNNNTGG	3 cut(s)	464, 671, 806
PkrI	GCNGC	1 cut(s)	586
PleI	GAGTC	3 cut(s)	40, 91, 427
PpsI	GAGTC	3 cut(s)	40, 91, 427
Psp6I	CCWGG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	334, 764
PsuI	RGATCY	1 cut(s)	723
RsaI	GTAC	5 cut(s)	28, 77, 440, 602, 845
RsaNI	GTAC	5 cut(s)	27, 76, 439, 601, 844
RseI	CAYNNNNRTG	2 cut(s)	413, 620
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	305, 525
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	4 cut(s)	4, 454, 661, 723
Sau96I	GGNCC	2 cut(s)	334, 764
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	3 cut(s)	40, 92, 428
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	7 cut(s)	16, 323, 544, 568, 620, 775, 845
SfaNI	GCATC	3 cut(s)	7, 119, 394
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	2 cut(s)	413, 620
Sse9I	AATT	1 cut(s)	794
SsiI	CCGC	2 cut(s)	90, 432
SspI	AATATT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	26, 283, 443
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	794
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	2 cut(s)	305, 525
Tru9I	TTAA	2 cut(s)	305, 525
TscAI	CASTG	2 cut(s)	277, 380
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	5 cut(s)	24, 258, 414, 635, 670
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	2 cut(s)	277, 380
Van91I	CCANNNNNTGG	3 cut(s)	464, 671, 806
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	1 cut(s)	794
XceI	RCATGY	1 cut(s)	601
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.