Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Reverse (-)

45214002 .. 45218387

Gene Structure 4386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATCATGCTGCTGAAGCTCATAGAACTGACCTGATGACCATTACTCGTTTTGTTCTGAATGAGCAGTCCAAGCATCCTGAGGCACGCGGTGATTTCACCATCTTGCTCAACCACATAGTTCTCGGCTGCAAATTTGTCTGCTCCGCTGTTAGCAAGGCCGGCCTTGCAAAGCTATTTGGACTTGCTGGGGAGACAAATGTTCAGGGTGAAGAACAAAAGAAATTGGATGTGCTTTCAAATGAAGTTTTCATCAAGGCATTAATTAGCAGTGGTCGCACTTGCATTCTTGTTTCCGAGGAGGATGAAGAGGCTACATTTGTGGAACCATCAAAGCGTGGAAGGTACATTGTTGTTTTTGATCCATTGGATGGATCCTCCAACATCGACTGTGGTGTTTCCATTGGAACTATCTTTGGGATTTACATGGTGAAAGACAAGGAAAATCCAACTCTTGATGATGTATTACGCCCTGGGAGTAATATGGTAGCTGCTGGTTATTGCATGTATGGAAGCTCTTGCATGCTGGTGCTTAGTACTGGAAATGGAGTCAATGGCTTCACACTTGATCCATCCCTTGGGGAATTTATATTAACCCACCCTAATATTAAGATTCCAAACAAGGGAAATATTTACTCAGTAAATGAAGGAAATGCAAAAAACTGGGACAAGCAAACTGCCGACATGGTTGCTGATGTCCACAGAACATTATTATATGGTGGCATCTTTTTGTACCCTGGCGACAAGAAAAGCCCAAATGGGAAACTACGAGTCCTTTATGAAGTTTTCCCAATGTCCTATCTAGTTGAGCAAGCAGGAGGGCAATCTTTTACTGGCAAAAAGCGGGCACTTGATGTGGTTCCAGAGAAGATACATGAGAGGTCCCCAATATTCCTTGGAAGCTATGACGATGTCGAGGAAATTAAACGACTTTATAAGGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

315

Amino Acids

34.61

Weight (kDa)

5.71

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	13 - 201	4.4e-85	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	226 - 312	2.9e-37	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AccB7I	CCANNNNNTGG	2 cut(s)	371, 578
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	90, 147, 844
AclWI	GGATC	5 cut(s)	12, 356, 369, 382, 563
AcsI	RAATTY	2 cut(s)	134, 584
AcuI	CTGAAG	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	347, 538, 734
AfiI	CCNNNNNNNGG	3 cut(s)	371, 578, 623
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	472, 736
AluBI	AGCT	5 cut(s)	20, 175, 491, 516, 903
AluI	AGCT	5 cut(s)	20, 175, 491, 516, 903
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	5 cut(s)	12, 356, 369, 382, 563
AoxI	GGCC	2 cut(s)	159, 163
ApeKI	GCWGC	3 cut(s)	11, 129, 491
ApoI	RAATTY	2 cut(s)	134, 584
AseI	ATTAAT	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	882
AsuHPI	GGTGA	4 cut(s)	91, 104, 221, 442
AvaII	GGWCC	1 cut(s)	882
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	850
BamHI	GGATCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	116, 478
BccI	CCATC	4 cut(s)	110, 337, 365, 580
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	2 cut(s)	474, 738
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	803
BisI	GCNGC	3 cut(s)	12, 130, 492
BlsI	GCNGC	3 cut(s)	13, 131, 493
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	2 cut(s)	474, 738
Bme18I	GGWCC	1 cut(s)	882
BmgT120I	GGNCC	1 cut(s)	882
BmiI	GGNNCC	4 cut(s)	327, 376, 861, 884
BmrFI	CCNGG	2 cut(s)	474, 738
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	2 cut(s)	85, 732
BmuI	ACTGGG	1 cut(s)	673
BsaJI	CCNNGG	6 cut(s)	297, 472, 473, 577, 736, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 578, 623
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	544, 668, 838
Bse21I	CCTNAGG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	474, 738
BseDI	CCNNGG	6 cut(s)	297, 472, 473, 577, 736, 895
BseGI	GGATG	5 cut(s)	76, 235, 310, 376, 572
BseLI	CCNNNNNNNGG	3 cut(s)	371, 578, 623
BseMII	CTCAG	2 cut(s)	72, 651
BseNI	ACTGG	3 cut(s)	544, 668, 838
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	850
BseXI	GCAGC	2 cut(s)	116, 478
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	161, 165
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	680, 868
BslI	CCNNNNNNNGG	3 cut(s)	371, 578, 623
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	680, 868
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	161, 165
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp143I	GATC	4 cut(s)	4, 361, 374, 568
BspACI	CCGC	3 cut(s)	90, 147, 844
BspANI	GGCC	2 cut(s)	161, 165
BspCNI	CTCAG	2 cut(s)	73, 650
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	327, 376, 861, 884
BspPI	GGATC	5 cut(s)	12, 356, 369, 382, 563
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	544, 668, 838
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	6 cut(s)	297, 472, 473, 577, 736, 895
BssMI	GATC	4 cut(s)	4, 361, 374, 568
BssT1I	CCWWGG	2 cut(s)	577, 895
Bst2UI	CCWGG	2 cut(s)	474, 738
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	5 cut(s)	88, 163, 524, 813, 846
BstDEI	CTNAG	3 cut(s)	81, 533, 637
BstF5I	GGATG	5 cut(s)	76, 235, 310, 376, 572
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	4 cut(s)	7, 364, 377, 571
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	4 cut(s)	4, 361, 374, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
BstNI	CCWGG	2 cut(s)	474, 738
BstNSI	RCATGY	2 cut(s)	508, 526
BstSCI	CCNGG	2 cut(s)	472, 736
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	116, 478
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	161, 165
BtsCI	GGATG	5 cut(s)	76, 235, 310, 376, 572
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	5 cut(s)	88, 163, 524, 813, 846
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	882
Csp6I	GTAC	3 cut(s)	346, 537, 733
CviAII	CATG	6 cut(s)	8, 427, 505, 523, 685, 875
CviQI	GTAC	3 cut(s)	346, 537, 733
DdeI	CTNAG	3 cut(s)	81, 533, 637
DpnI	GATC	4 cut(s)	6, 363, 376, 570
DpnII	GATC	4 cut(s)	4, 361, 374, 568
DraIII	CACNNNGTG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	577, 895
Eco47I	GGWCC	1 cut(s)	882
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	882
EcoRII	CCWGG	2 cut(s)	472, 736
EcoT14I	CCWWGG	2 cut(s)	577, 895
ErhI	CCWWGG	2 cut(s)	577, 895
FaeI	CATG	6 cut(s)	11, 430, 508, 526, 688, 878
FaqI	GGGAC	2 cut(s)	680, 868
FatI	CATG	6 cut(s)	7, 426, 504, 522, 684, 874
FauI	CCCGC	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	12, 130, 492
FokI	GGATG	5 cut(s)	63, 242, 317, 383, 559
FseI	GGCCGGCC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	12, 130, 492
FspBI	CTAG	1 cut(s)	803
GluI	GCNGC	3 cut(s)	12, 130, 492
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	161, 165
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	6 cut(s)	11, 430, 508, 526, 688, 878
HinfI	GANTC	3 cut(s)	549, 613, 771
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	4 cut(s)	91, 104, 221, 442
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	2 cut(s)	60, 298
Hpy188III	TCNNGA	3 cut(s)	80, 455, 863
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	2 cut(s)	336, 641
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	6 cut(s)	132, 170, 285, 504, 522, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
HpyF3I	CTNAG	3 cut(s)	81, 533, 637
Hsp92II	CATG	6 cut(s)	11, 430, 508, 526, 688, 878
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	4, 361, 374, 568
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	2 cut(s)	116, 478
LweI	GCATC	2 cut(s)	85, 732
MaeI	CTAG	1 cut(s)	803
MalI	GATC	4 cut(s)	6, 363, 376, 570
MboI	GATC	4 cut(s)	4, 361, 374, 568
MboII	GAAGA	3 cut(s)	224, 320, 880
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	850
MluCI	AATT	5 cut(s)	134, 224, 264, 584, 921
MlyI	GAGTC	2 cut(s)	558, 780
MmeI	TCCRAC	2 cut(s)	405, 473
MnlI	CCTC	8 cut(s)	76, 292, 295, 304, 388, 812, 873, 910
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	5 cut(s)	263, 593, 609, 924, 946
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	474, 738
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	474, 738
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	4 cut(s)	4, 361, 374, 568
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	6 cut(s)	11, 430, 508, 526, 688, 878
NlaIV	GGNNCC	4 cut(s)	327, 376, 861, 884
NmeAIII	GCCGAG	1 cut(s)	105
NspI	RCATGY	2 cut(s)	508, 526
PaeI	GCATGC	1 cut(s)	526
PasI	CCCWGGG	1 cut(s)	473
PctI	GAATGC	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	911
PflMI	CCANNNNNTGG	2 cut(s)	371, 578
PkrI	GCNGC	3 cut(s)	13, 131, 493
PleI	GAGTC	2 cut(s)	557, 779
PpsI	GAGTC	2 cut(s)	557, 779
PpuMI	RGGWCCY	1 cut(s)	882
PshBI	ATTAAT	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	882
Psp6I	CCWGG	2 cut(s)	472, 736
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	472, 736
PspN4I	GGNNCC	4 cut(s)	327, 376, 861, 884
PspPI	GGNCC	1 cut(s)	882
PspPPI	RGGWCCY	1 cut(s)	882
PsuI	RGATCY	1 cut(s)	374
PsyI	GACNNNGTC	1 cut(s)	911
RigI	GGCCGGCC	1 cut(s)	165
RsaI	GTAC	3 cut(s)	347, 538, 734
RsaNI	GTAC	3 cut(s)	346, 537, 733
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	263, 593, 609, 924, 946
SatI	GCNGC	3 cut(s)	12, 130, 492
Sau3AI	GATC	4 cut(s)	4, 361, 374, 568
Sau96I	GGNCC	1 cut(s)	882
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	2 cut(s)	558, 780
ScrFI	CCNGG	2 cut(s)	474, 738
SduI	GDGCHC	1 cut(s)	850
SetI	ASST	8 cut(s)	22, 36, 177, 347, 493, 518, 884, 905
SfaNI	GCATC	2 cut(s)	85, 732
SinI	GGWCC	1 cut(s)	882
SmiMI	CAYNNNNRTG	1 cut(s)	527
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	5 cut(s)	134, 224, 264, 584, 921
SsiI	CCGC	3 cut(s)	90, 147, 844
SspI	AATATT	3 cut(s)	607, 631, 891
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	2 cut(s)	472, 736
StyI	CCWWGG	2 cut(s)	577, 895
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	387, 915
TasI	AATT	5 cut(s)	134, 224, 264, 584, 921
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	5 cut(s)	263, 593, 609, 924, 946
Tru9I	TTAA	5 cut(s)	263, 593, 609, 924, 946
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	3 cut(s)	11, 129, 491
TspDTI	ATGAA	5 cut(s)	241, 258, 321, 660, 795
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	911
Van91I	CCANNNNNTGG	2 cut(s)	371, 578
VpaK11BI	GGWCC	1 cut(s)	882
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	2 cut(s)	134, 584
XceI	RCATGY	2 cut(s)	508, 526
XspI	CTAG	1 cut(s)	803
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.