Rorug06G0094700

Belongs to the FBPase class 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
12670186 .. 12671640
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0094700.1

Sequence Viewer

Length: 1455 bp
ATGGTCATGCTCTCTCTATATTTGTCTTACAGTAACTTGGGACACTACCTCCGCTGGTTTACCAGGTCTGTTTCCTTCAAGCAATTACATGAACACAAAATATCTGCAGGCAAGAGAAAACAAATCGAGAACTGCAACGACGACCAAATTACTTGTCATGGGTCAGTTGGGTGCTGGCAGACACCGCCACAAGACATCATGGAGGAGATTCTACAGAAAATGGGTTTAATTGCTCGTACACGCTTAGCCAAGGTCTGCATGTCTTGGAGTTCACTTGTTATGAGAGCTGATATCCGCAGTGCTCCGCAACTGCCATGGTTAGTACACCCTCAAACCCCAAACACCAACTACTTAACCTTTTCCAGCCTCTCTGAGGGTGAAGTTGTGAACTTGGAGCTCCCAAAGCGATTCCGAGGACAAGGCAAGTTCAAGTTTCGAGCGTCTTCTAAAGGTTGGTTGATCATTTTACAAGAAAAAGGATTCGGCTTTAATATGTTCCTATACAATCCGATTTCTAGAGCCCAACACCAACTTCCTTCCTTAAACACTATTCCATCTTTCCTATCTTTCCAACTAGCAAGAATGCTAGGGAAGGTTATCAACAATCATGCCGAGAATTTTGTATCTAAAGTTGTGTTGTCTAGTCCAAATGTCTCAGAATGCATTGTGGCTGCCGTTTTCGAACCTCATCATGAATTGGGATTATGCAGACCTGGAGACAAAAGCTGGACTGTCTTTGAGATACTGAATCATGAGGACGACTTCCTCATGGATTTACTTTTTTCGCAGGGCATGCTATACGGCTTAGTTGATAATAGCAAGTCCACCAAGAATGGCATCGGCGCAGCTCGCATCTTAAACTTTGGAGATGATCAGGCAATGACAGTGGAATTGAAGTTGGTCTACGGCCATAAAGAAGTTGGTAATACTACAGAATATCATGATGGCTTTCTAATCTTTTTAAATAGAGACTACAACTCATATTTGTTAGAATCAACAACAAATAGCGACAAGGAAATCTTGTTGATCCATCAAATGCTCGATTGTTTAATCCCCAACTGTGCTGATGATGATGATGATGATGATGATGATGATGATGAGGAAATCGAATATCAGAGGACAAGCGGGTTTGCAGTATACAAGATTGACCTTGAGTATGGCAACTTTCATGAGGTACAAAATTTGGGGGACCAAATAATATTTTTGGCAGAACATAGCTCTTCCTTGTCCTTTCCTGCAAGTGATTTCAAACTACAAGGAAATTGCATTTATTTTGCAACAAGCGGATACGCAACTATCAACCTACCTCGTAAGACCCTTCTTGGATCAAATATATCTCGTGAAATCGGAATCTTTAGTTTAGATGACGGAAAAATTAAGCGACCGTTTCCAAGTCTTGATGTTGCTGGCATTTCATCACCTAGTCAACTGAGTTGGTTTAGTCCAAGTTTATGA

Protein Analysis

484

Amino Acids

54.73

Weight (kDa)

5.46

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 120 - 452 2e-39 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 903, 1137
AciI CCGC 6 cut(s) 52, 185, 295, 305, 1125, 1284
AclWI GGATC 2 cut(s) 1021, 1333
AcoI YGGCCR 1 cut(s) 907
AcsI RAATTY 2 cut(s) 616, 1180
AfaI GTAC 3 cut(s) 238, 324, 1176
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 4 cut(s) 79, 430, 895, 1249
AjnI CCWGG 2 cut(s) 62, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 5 cut(s) 287, 397, 726, 848, 1218
AluI AGCT 5 cut(s) 287, 397, 726, 848, 1218
Alw21I GWGCWC 2 cut(s) 304, 399
Alw26I GTCTC 3 cut(s) 658, 711, 963
AlwI GGATC 2 cut(s) 1021, 1333
AoxI GGCC 1 cut(s) 907
ApeKI GCWGC 2 cut(s) 671, 845
ApoI RAATTY 2 cut(s) 616, 1180
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspLEI GCGC 1 cut(s) 845
AspS9I GGNCC 1 cut(s) 1189
AsuHPI GGTGA 2 cut(s) 389, 1410
AsuII TTCGAA 1 cut(s) 681
AvaII GGWCC 1 cut(s) 1189
BanII GRGCYC 2 cut(s) 399, 523
BarI GAAGNNNNNNTAC 2 cut(s) 887, 919
BauI CACGAG 1 cut(s) 1338
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 304, 399
BbvI GCAGC 2 cut(s) 658, 857
BccI CCATC 3 cut(s) 562, 938, 1038
BceAI ACGGC 3 cut(s) 659, 817, 922
BciT130I CCWGG 2 cut(s) 64, 714
BciVI GTATCC 1 cut(s) 1280
BclI TGATCA 2 cut(s) 459, 871
BcoDI GTCTC 3 cut(s) 658, 711, 963
BfaI CTAG 5 cut(s) 516, 575, 587, 642, 1422
BfmI CTRYAG 3 cut(s) 105, 212, 930
BfuI GTATCC 1 cut(s) 1280
BisI GCNGC 2 cut(s) 672, 846
BlpI GCTNAGC 1 cut(s) 244
BlsI GCNGC 2 cut(s) 673, 847
Bme1390I CCNGG 2 cut(s) 64, 714
Bme18I GGWCC 1 cut(s) 1189
BmgT120I GGNCC 1 cut(s) 1189
BmiI GGNNCC 1 cut(s) 1190
BmrFI CCNGG 2 cut(s) 64, 714
BmsI GCATC 2 cut(s) 846, 861
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 735
Bpu1102I GCTNAGC 1 cut(s) 244
Bpu14I TTCGAA 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 1172
BsaJI CCNNGG 3 cut(s) 249, 314, 412
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 2 cut(s) 64, 714
BseDI CCNNGG 3 cut(s) 249, 314, 412
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 3 cut(s) 363, 669, 1421
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 658, 857
Bsh1285I CGRYCG 1 cut(s) 1385
BshFI GGCC 1 cut(s) 909
BsiEI CGRYCG 1 cut(s) 1385
BsiHKAI GWGCWC 2 cut(s) 304, 399
BslFI GGGAC 2 cut(s) 54, 1202
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 3 cut(s) 658, 711, 963
BsmFI GGGAC 2 cut(s) 54, 1202
BsmI GAATGC 2 cut(s) 588, 665
BsnI GGCC 1 cut(s) 909
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 3 cut(s) 304, 399, 523
Bsp143I GATC 4 cut(s) 459, 871, 1026, 1325
Bsp1720I GCTNAGC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 6 cut(s) 52, 185, 295, 305, 1125, 1284
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 3 cut(s) 364, 668, 1422
BspHI TCATGA 4 cut(s) 691, 751, 940, 1168
BspLI GGNNCC 1 cut(s) 1190
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 1021, 1333
BspQI GCTCTTC 1 cut(s) 1225
BspT104I TTCGAA 1 cut(s) 681
BsrDI GCAATG 1 cut(s) 885
BssECI CCNNGG 3 cut(s) 249, 314, 412
BssMI GATC 4 cut(s) 459, 871, 1026, 1325
BssNAI GTATAC 1 cut(s) 1138
BssSI CACGAG 1 cut(s) 1338
BssT1I CCWWGG 2 cut(s) 249, 314
Bst1107I GTATAC 1 cut(s) 1138
Bst2BI CACGAG 1 cut(s) 1338
Bst2UI CCWGG 2 cut(s) 64, 714
Bst4CI ACNGT 5 cut(s) 32, 733, 886, 1061, 1386
Bst6I CTCTTC 1 cut(s) 1225
BstAPI GCANNNNNTGC 1 cut(s) 793
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 5 cut(s) 109, 176, 794, 850, 1408
BstDEI CTNAG 5 cut(s) 244, 372, 655, 805, 1430
BstDSI CCRYGG 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 845
BstKTI GATC 4 cut(s) 462, 874, 1029, 1328
BstMAI GTCTC 3 cut(s) 658, 711, 963
BstMBI GATC 4 cut(s) 459, 871, 1026, 1325
BstMCI CGRYCG 1 cut(s) 1385
BstMWI GCNNNNNNNGC 4 cut(s) 184, 403, 793, 849
BstNI CCWGG 2 cut(s) 64, 714
BstNSI RCATGY 2 cut(s) 262, 796
BstSCI CCNGG 2 cut(s) 62, 712
BstSFI CTRYAG 3 cut(s) 105, 212, 930
BstV1I GCAGC 2 cut(s) 658, 857
BstV2I GAAGAC 1 cut(s) 435
BstZ17I GTATAC 1 cut(s) 1138
BsuI GTATCC 1 cut(s) 1280
BsuRI GGCC 1 cut(s) 909
BtgI CCRYGG 1 cut(s) 314
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 304, 891
Cac8I GCNNGC 5 cut(s) 109, 176, 794, 850, 1408
CciI TCATGA 4 cut(s) 691, 751, 940, 1168
CfoI GCGC 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 1189
CseI GACGC 1 cut(s) 429
CsiI ACCWGGT 1 cut(s) 62
Csp6I GTAC 3 cut(s) 237, 323, 1175
CspCI CAANNNNNGTGG 2 cut(s) 867, 902
CviQI GTAC 3 cut(s) 237, 323, 1175
DdeI CTNAG 5 cut(s) 244, 372, 655, 805, 1430
DpnI GATC 4 cut(s) 461, 873, 1028, 1327
DpnII GATC 4 cut(s) 459, 871, 1026, 1325
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 907
Eam1104I CTCTTC 1 cut(s) 1225
EarI CTCTTC 1 cut(s) 1225
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 249, 314
Eco24I GRGCYC 2 cut(s) 399, 523
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 1189
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 62, 712
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 249, 314
EcoT22I ATGCAT 1 cut(s) 665
EcoT38I GRGCYC 2 cut(s) 399, 523
ErhI CCWWGG 2 cut(s) 249, 314
FalI AAGNNNNNCTT 2 cut(s) 1004, 1036
FaqI GGGAC 2 cut(s) 54, 1202
FauI CCCGC 1 cut(s) 1118
FbaI TGATCA 2 cut(s) 459, 871
FblI GTMKAC 2 cut(s) 903, 1137
Fnu4HI GCNGC 2 cut(s) 672, 846
FriOI GRGCYC 2 cut(s) 399, 523
Fsp4HI GCNGC 2 cut(s) 672, 846
FspBI CTAG 5 cut(s) 516, 575, 587, 642, 1422
GlaI GCGC 1 cut(s) 844
GluI GCNGC 2 cut(s) 672, 846
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 1 cut(s) 909
HgaI GACGC 1 cut(s) 429
HhaI GCGC 1 cut(s) 845
Hin6I GCGC 1 cut(s) 843
HinP1I GCGC 1 cut(s) 843
HincII GTYRAC 1 cut(s) 1427
HindII GTYRAC 1 cut(s) 1427
HinfI GANTC 6 cut(s) 208, 408, 480, 748, 992, 1350
HphI GGTGA 2 cut(s) 389, 1410
Hpy166II GTNNAC 9 cut(s) 60, 239, 272, 325, 388, 825, 904, 1138, 1427
Hpy188I TCNGA 6 cut(s) 373, 413, 510, 658, 1116, 1349
Hpy188III TCNNGA 8 cut(s) 127, 516, 692, 752, 941, 1169, 1340, 1397
Hpy8I GTNNAC 9 cut(s) 60, 239, 272, 325, 388, 825, 904, 1138, 1427
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 85, 546, 586, 1328
HpyCH4III ACNGT 5 cut(s) 32, 733, 886, 1061, 1386
HpyCH4V TGCA 9 cut(s) 107, 135, 258, 663, 708, 1133, 1238, 1266, 1277
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 403, 793, 849
HpyF3I CTNAG 5 cut(s) 244, 372, 655, 805, 1430
HspAI GCGC 1 cut(s) 843
Ksp22I TGATCA 2 cut(s) 459, 871
Kzo9I GATC 4 cut(s) 459, 871, 1026, 1325
LguI GCTCTTC 1 cut(s) 1225
LmnI GCTCC 3 cut(s) 307, 394, 402
Lsp1109I GCAGC 2 cut(s) 658, 857
LweI GCATC 2 cut(s) 846, 861
MabI ACCWGGT 1 cut(s) 62
MaeI CTAG 5 cut(s) 516, 575, 587, 642, 1422
MaeIII GTNAC 1 cut(s) 32
MalI GATC 4 cut(s) 461, 873, 1028, 1327
MboI GATC 4 cut(s) 459, 871, 1026, 1325
MboII GAAGA 2 cut(s) 435, 1212
MhlI GDGCHC 3 cut(s) 304, 399, 523
MluCI AATT 9 cut(s) 83, 147, 228, 616, 695, 890, 1180, 1261, 1374
MmeI TCCRAC 1 cut(s) 595
Mph1103I ATGCAT 1 cut(s) 665
MseI TTAA 8 cut(s) 227, 353, 489, 542, 857, 962, 1049, 1377
MspA1I CMGCKG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 64, 714
Mva1269I GAATGC 2 cut(s) 588, 665
MvaI CCWGG 2 cut(s) 64, 714
MwoI GCNNNNNNNGC 4 cut(s) 184, 403, 793, 849
NcoI CCATGG 1 cut(s) 314
NdeII GATC 4 cut(s) 459, 871, 1026, 1325
NlaIV GGNNCC 1 cut(s) 1190
NmeAIII GCCGAG 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 2 cut(s) 262, 796
NspV TTCGAA 1 cut(s) 681
PaeI GCATGC 1 cut(s) 796
PagI TCATGA 4 cut(s) 691, 751, 940, 1168
PciSI GCTCTTC 1 cut(s) 1225
PctI GAATGC 2 cut(s) 588, 665
PfeI GAWTC 6 cut(s) 208, 408, 480, 748, 992, 1350
PkrI GCNGC 2 cut(s) 673, 847
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 62, 712
PspGI CCWGG 2 cut(s) 62, 712
PspN4I GGNNCC 1 cut(s) 1190
PspPI GGNCC 1 cut(s) 1189
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 3 cut(s) 238, 324, 1176
RsaNI GTAC 3 cut(s) 237, 323, 1175
SacI GAGCTC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 1225
SaqAI TTAA 8 cut(s) 227, 353, 489, 542, 857, 962, 1049, 1377
SatI GCNGC 2 cut(s) 672, 846
Sau3AI GATC 4 cut(s) 459, 871, 1026, 1325
Sau96I GGNCC 1 cut(s) 1189
ScrFI CCNGG 2 cut(s) 64, 714
SduI GDGCHC 3 cut(s) 304, 399, 523
SexAI ACCWGGT 1 cut(s) 62
SfaNI GCATC 2 cut(s) 846, 861
SfcI CTRYAG 3 cut(s) 105, 212, 930
SfuI TTCGAA 1 cut(s) 681
SinI GGWCC 1 cut(s) 1189
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
SphI GCATGC 1 cut(s) 796
Sse9I AATT 9 cut(s) 83, 147, 228, 616, 695, 890, 1180, 1261, 1374
SsiI CCGC 6 cut(s) 52, 185, 295, 305, 1125, 1284
SspI AATATT 1 cut(s) 1200
SspMI CTAG 5 cut(s) 516, 575, 587, 642, 1422
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 62, 712
StyI CCWWGG 2 cut(s) 249, 314
TaaI ACNGT 5 cut(s) 32, 733, 886, 1061, 1386
TaqI TCGA 5 cut(s) 126, 436, 681, 1041, 1107
TasI AATT 9 cut(s) 83, 147, 228, 616, 695, 890, 1180, 1261, 1374
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 6 cut(s) 208, 408, 480, 748, 992, 1350
Tru1I TTAA 8 cut(s) 227, 353, 489, 542, 857, 962, 1049, 1377
Tru9I TTAA 8 cut(s) 227, 353, 489, 542, 857, 962, 1049, 1377
TscAI CASTG 2 cut(s) 304, 891
TseI GCWGC 2 cut(s) 671, 845
TspDTI ATGAA 4 cut(s) 105, 708, 1157, 1404
TspGWI ACGGA 1 cut(s) 1383
TspRI CASTG 2 cut(s) 304, 891
VpaK11BI GGWCC 1 cut(s) 1189
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 2 cut(s) 616, 1180
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 2 cut(s) 262, 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XmiI GTMKAC 2 cut(s) 903, 1137
XspI CTAG 5 cut(s) 516, 575, 587, 642, 1422
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.