Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Reverse (-)

35493851 .. 35498332

Gene Structure 4482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATCATGAAGCTGATGCCTACCGTACTGACTTGATGACCATGACTCGGTTCGTGCTGAATGAGCAGTCCAAGTACCCTGAGTCACGCGGAGATTTCACCATCTTGCTCAGTCATATTGTTCTTGGATGCAAGTTTGTGTGCTCTGCTGTTAATAAGGCTGGTCTGGCTAAACTTATTGGCCTTGCTGGAGAGACCAATGTTCAGGGTGAAGAGCAAAAGAAACTGGATGTGCTTTCAAATGAAGTTTTTGTGAAGGCTCTGGTTAGCAGTGGTCGAACTTGTATCCTTGTTTCGGAGGAAGATGAAGATGCCATATTTGTGGAGTCATCAAAGCGCGGAAAGTACTGTGTTGTGTTTGATCCATTGGATGGTTCGTCTAACATTGATTGTGGGGTTTCTATCGGCACGATATTTGGGATTTATGTGCTAAATGAAGGCAAGGAAGCTTCTCTAGATGACGTCCTGCAACCTGGAAAGAATATGTTGGCAGCAGGCTATTGCATGTACGGAAGTTCTTGCACGTTTGTGTTGACTACTGGAAGTGGAGTTCATGGTTTCACCCTTGATCCATCTCTTGGGGAGTTCATACTAACTCACCCAGACATCAAGATTCCGAAGAAAGGAAAGATCTATTCTGTGAACGAAGGGAATGCTAAGAACTGGGATGGTCCAACAGCTAAGTATGTGGAGAAATGCAAATTCCCAACTGATGGTTCTTCACCAAAGTCTCTAAGATACATTGGAAGCATGGTTGCTGATGTTCATCGGACATTGCTTTATGGAGGTATCTTTTTGTACCCTGCTGATAAGAAGAGTCCAAATGGAAAACTCCGTGTTCTCTACGAAGTCTTCCCCATGTCATTCTTGCTGGAACAGGCGGGAGGTCAGGCTTTCACTGGCAAGGAACGGGCCCTTGACCTGGTTCCAAAGAAGATACATGAGCGGTCTCCAATATTCCTTGGCAGCTATGATGATGTGGAGGAGATCAAGGCACTCTACGCTGCTGAAGAAAAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009311 GO:0009312 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016051 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0030388 GO:0033993 GO:0034284 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046364 GO:0050308 GO:0050896 GO:0071704 GO:0097305 GO:1901135 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

341

Amino Acids

37.35

Weight (kDa)

5.54

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	13 - 201	1.3e-85	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	205 - 334	1.2e-51	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccB7I	CCANNNNNTGG	3 cut(s)	371, 578, 713
AccBSI	CCGCTC	1 cut(s)	946
AccII	CGCG	2 cut(s)	90, 339
AciI	CCGC	4 cut(s)	90, 339, 881, 946
AclWI	GGATC	3 cut(s)	12, 356, 563
AcsI	RAATTY	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	5 cut(s)	28, 77, 347, 509, 800
AfiI	CCNNNNNNNGG	7 cut(s)	48, 295, 371, 578, 623, 713, 922
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	472, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	700, 732
AleI	CACNNNNGTG	1 cut(s)	527
AloI	GAACNNNNNNTCC	2 cut(s)	534, 566
AluBI	AGCT	4 cut(s)	14, 449, 680, 969
AluI	AGCT	4 cut(s)	14, 449, 680, 969
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	3 cut(s)	188, 735, 954
AlwI	GGATC	3 cut(s)	12, 356, 563
AoxI	GGCC	2 cut(s)	181, 912
ApaI	GGGCCC	1 cut(s)	916
ApeKI	GCWGC	3 cut(s)	491, 966, 1004
ApoI	RAATTY	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	3 cut(s)	671, 912, 913
AsuHPI	GGTGA	5 cut(s)	91, 221, 553, 590, 714
AvaII	GGWCC	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	916
BanII	GRGCYC	1 cut(s)	916
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	503, 978, 991
BccI	CCATC	5 cut(s)	110, 365, 580, 662, 707
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	2 cut(s)	474, 923
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	188, 735, 954
BfaI	CTAG	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	296
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	3 cut(s)	492, 967, 1005
BlsI	GCNGC	3 cut(s)	493, 968, 1006
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	474, 923
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	3 cut(s)	671, 912, 913
BmiI	GGNNCC	2 cut(s)	914, 927
BmrFI	CCNGG	2 cut(s)	474, 923
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	3 cut(s)	7, 119, 301
BmuI	ACTGGG	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	844
BpmI	CTGGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	462
BsaI	GGTCTC	2 cut(s)	188, 954
BsaJI	CCNNGG	1 cut(s)	961
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 295, 371, 578, 623, 713, 922
Bse1I	ACTGG	4 cut(s)	231, 544, 668, 904
Bse3DI	GCAATG	1 cut(s)	773
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	474, 923
BseDI	CCNNGG	1 cut(s)	961
BseGI	GGATG	4 cut(s)	134, 235, 376, 673
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	7 cut(s)	48, 295, 371, 578, 623, 713, 922
BseMI	GCAATG	1 cut(s)	773
BseMII	CTCAG	2 cut(s)	72, 124
BseNI	ACTGG	4 cut(s)	231, 544, 668, 904
BseRI	GAGGAG	1 cut(s)	998
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	3 cut(s)	503, 978, 991
Bsh1236I	CGCG	2 cut(s)	90, 339
BshFI	GGCC	2 cut(s)	183, 914
BsiHKAI	GWGCWC	1 cut(s)	146
BslI	CCNNNNNNNGG	7 cut(s)	48, 295, 371, 578, 623, 713, 922
BsmAI	GTCTC	3 cut(s)	188, 735, 954
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	183, 914
Bso31I	GGTCTC	2 cut(s)	188, 954
Bsp120I	GGGCCC	1 cut(s)	912
Bsp1286I	GDGCHC	2 cut(s)	146, 916
Bsp143I	GATC	5 cut(s)	4, 361, 568, 630, 987
BspACI	CCGC	4 cut(s)	90, 339, 881, 946
BspANI	GGCC	2 cut(s)	183, 914
BspCNI	CTCAG	2 cut(s)	73, 123
BspFNI	CGCG	2 cut(s)	90, 339
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	914, 927
BspPI	GGATC	3 cut(s)	12, 356, 563
BspQI	GCTCTTC	1 cut(s)	207
BspTNI	GGTCTC	2 cut(s)	188, 954
BsrBI	CCGCTC	1 cut(s)	946
BsrDI	GCAATG	1 cut(s)	773
BsrI	ACTGG	4 cut(s)	231, 544, 668, 904
BssECI	CCNNGG	1 cut(s)	961
BssMI	GATC	5 cut(s)	4, 361, 568, 630, 987
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	961
Bst2UI	CCWGG	2 cut(s)	474, 923
Bst4CI	ACNGT	2 cut(s)	26, 350
Bst6I	CTCTTC	2 cut(s)	207, 809
BstACI	GRCGYC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	5 cut(s)	81, 110, 657, 681, 734
BstF5I	GGATG	4 cut(s)	134, 235, 376, 673
BstFNI	CGCG	2 cut(s)	90, 339
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	5 cut(s)	7, 364, 571, 633, 990
BstMAI	GTCTC	3 cut(s)	188, 735, 954
BstMBI	GATC	5 cut(s)	4, 361, 568, 630, 987
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 167, 1001
BstNI	CCWGG	2 cut(s)	474, 923
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	472, 921
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	2 cut(s)	90, 339
BstV1I	GCAGC	3 cut(s)	503, 978, 991
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	183, 914
BtsCI	GGATG	4 cut(s)	134, 235, 376, 673
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	277, 897
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	671, 912, 913
CsiI	ACCWGGT	1 cut(s)	921
Csp6I	GTAC	5 cut(s)	27, 76, 346, 508, 799
CviAII	CATG	7 cut(s)	8, 43, 505, 554, 751, 859, 941
CviQI	GTAC	5 cut(s)	27, 76, 346, 508, 799
DdeI	CTNAG	5 cut(s)	81, 110, 657, 681, 734
DpnI	GATC	5 cut(s)	6, 363, 570, 632, 989
DpnII	GATC	5 cut(s)	4, 361, 568, 630, 987
Eam1104I	CTCTTC	2 cut(s)	207, 809
EarI	CTCTTC	2 cut(s)	207, 809
Eco130I	CCWWGG	1 cut(s)	961
Eco24I	GRGCYC	1 cut(s)	916
Eco31I	GGTCTC	2 cut(s)	188, 954
Eco47I	GGWCC	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	472, 921
EcoT14I	CCWWGG	1 cut(s)	961
EcoT38I	GRGCYC	1 cut(s)	916
ErhI	CCWWGG	1 cut(s)	961
FaeI	CATG	7 cut(s)	11, 46, 508, 557, 754, 862, 944
FatI	CATG	7 cut(s)	7, 42, 504, 553, 750, 858, 940
FauI	CCCGC	1 cut(s)	874
Fnu4HI	GCNGC	3 cut(s)	492, 967, 1005
FokI	GGATG	4 cut(s)	141, 242, 383, 680
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	3 cut(s)	492, 967, 1005
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	3 cut(s)	492, 967, 1005
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	183, 914
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	7 cut(s)	11, 46, 508, 557, 754, 862, 944
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	5 cut(s)	46, 83, 326, 613, 817
HphI	GGTGA	5 cut(s)	91, 221, 553, 590, 714
Hpy166II	GTNNAC	2 cut(s)	534, 643
Hpy188I	TCNGA	3 cut(s)	298, 618, 771
Hpy188III	TCNNGA	3 cut(s)	8, 455, 610
Hpy8I	GTNNAC	2 cut(s)	534, 643
HpyAV	CCTTC	4 cut(s)	250, 431, 641, 1012
HpyCH4III	ACNGT	2 cut(s)	26, 350
HpyCH4IV	ACGT	2 cut(s)	462, 524
HpyCH4V	TGCA	5 cut(s)	132, 469, 504, 522, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 167, 1001
HpyF3I	CTNAG	5 cut(s)	81, 110, 657, 681, 734
HpySE526I	ACGT	2 cut(s)	462, 524
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	7 cut(s)	11, 46, 508, 557, 754, 862, 944
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	4, 361, 568, 630, 987
LguI	GCTCTTC	1 cut(s)	207
Lsp1109I	GCAGC	3 cut(s)	503, 978, 991
LweI	GCATC	3 cut(s)	7, 119, 301
MabI	ACCWGGT	1 cut(s)	921
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	2 cut(s)	462, 524
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	5 cut(s)	6, 363, 570, 632, 989
MbiI	CCGCTC	1 cut(s)	946
MboI	GATC	5 cut(s)	4, 361, 568, 630, 987
MboII	GAAGA	9 cut(s)	224, 314, 320, 631, 711, 826, 844, 946, 1022
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	2 cut(s)	146, 916
MluCI	AATT	1 cut(s)	701
MlyI	GAGTC	4 cut(s)	40, 92, 335, 826
MmeI	TCCRAC	1 cut(s)	698
MnlI	CCTC	4 cut(s)	292, 779, 878, 976
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	320, 527
MspR9I	CCNGG	2 cut(s)	474, 923
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	2 cut(s)	474, 923
MvnI	CGCG	2 cut(s)	90, 339
MwoI	GCNNNNNNNGC	3 cut(s)	64, 167, 1001
NdeII	GATC	5 cut(s)	4, 361, 568, 630, 987
NlaIII	CATG	7 cut(s)	11, 46, 508, 557, 754, 862, 944
NlaIV	GGNNCC	2 cut(s)	914, 927
NmuCI	GTSAC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	508
OliI	CACNNNNGTG	1 cut(s)	527
PagI	TCATGA	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	613
PflMI	CCANNNNNTGG	3 cut(s)	371, 578, 713
PkrI	GCNGC	3 cut(s)	493, 968, 1006
PleI	GAGTC	4 cut(s)	40, 91, 334, 825
PpsI	GAGTC	4 cut(s)	40, 91, 334, 825
Psp6I	CCWGG	2 cut(s)	472, 921
PspGI	CCWGG	2 cut(s)	472, 921
PspN4I	GGNNCC	2 cut(s)	914, 927
PspOMI	GGGCCC	1 cut(s)	912
PspPI	GGNCC	3 cut(s)	671, 912, 913
PsuI	RGATCY	1 cut(s)	630
RsaI	GTAC	5 cut(s)	28, 77, 347, 509, 800
RsaNI	GTAC	5 cut(s)	27, 76, 346, 508, 799
RseI	CAYNNNNRTG	2 cut(s)	320, 527
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	492, 967, 1005
Sau3AI	GATC	5 cut(s)	4, 361, 568, 630, 987
Sau96I	GGNCC	3 cut(s)	671, 912, 913
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	4 cut(s)	40, 92, 335, 826
ScrFI	CCNGG	2 cut(s)	474, 923
SduI	GDGCHC	2 cut(s)	146, 916
SexAI	ACCWGGT	1 cut(s)	921
SfaNI	GCATC	3 cut(s)	7, 119, 301
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	320, 527
Sse9I	AATT	1 cut(s)	701
SsiI	CCGC	4 cut(s)	90, 339, 881, 946
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	472, 921
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	2 cut(s)	26, 350
TaiI	ACGT	2 cut(s)	465, 527
TaqI	TCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	701
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	277, 904
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	3 cut(s)	491, 966, 1004
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	7 cut(s)	24, 258, 321, 450, 542, 577, 755
TspGWI	ACGGA	2 cut(s)	525, 824
TspRI	CASTG	2 cut(s)	277, 904
Van91I	CCANNNNNTGG	3 cut(s)	371, 578, 713
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	1 cut(s)	701
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	1 cut(s)	508
XspI	CTAG	1 cut(s)	455
ZraI	GACGTC	1 cut(s)	463
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.