Rh6CG213000

Belongs to the FBPase class 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002794
Physical Location & Seq
Reverse (-)
35383669 .. 35384245
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG213000.1

Sequence Viewer

Length: 168 bp
ATGTCATTCTTGCTGGAACAGGCGGGAGGTCAGGCCTTCACTGGCAAGGAACGGGCCCTTGACCTGGTTCCAAAGAAGATACATGAGCGGTCTCCAATATTCCTTGGCAGCTATGATGATGTGGAGGAGATCAAGGCACTCTACGCTGCTGAAGAAAAGAAGGAATGA

Protein Analysis

55

Amino Acids

6.2

Weight (kDa)

5.07

Isoelectric Point (pI)

63.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBPase_C PF18913 1 - 48 5.3e-15 Fructose-1-6-bisphosphatase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 2 cut(s) 23, 88
AfiI CCNNNNNNNGG 1 cut(s) 64
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 2 cut(s) 33, 54
ApaI GGGCCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 108, 146
AspS9I GGNCC 2 cut(s) 54, 55
BaeGI GKGCMC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 120, 133
BciT130I CCWGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 96
BisI GCNGC 2 cut(s) 109, 147
BlsI GCNGC 2 cut(s) 110, 148
Bme1390I CCNGG 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 54, 55
BmiI GGNNCC 2 cut(s) 56, 69
BmrFI CCNGG 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 2 cut(s) 120, 133
BshFI GGCC 2 cut(s) 35, 56
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 2 cut(s) 35, 56
Bso31I GGTCTC 1 cut(s) 96
Bsp120I GGGCCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 2 cut(s) 23, 88
BspANI GGCC 2 cut(s) 35, 56
BspLI GGNNCC 2 cut(s) 56, 69
BspTNI GGTCTC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 65
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 120, 133
BsuRI GGCC 2 cut(s) 35, 56
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 54, 55
CsiI ACCWGGT 1 cut(s) 63
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 35, 56, 111
CviKI_1 RGCY 3 cut(s) 35, 56, 111
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 86
FaiI YATR 2 cut(s) 84, 114
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 109, 147
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 109, 147
GluI GCNGC 2 cut(s) 109, 147
HaeIII GGCC 2 cut(s) 35, 56
Hin1II CATG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 46, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 5, 17, 27, 50, 77
Lsp1109I GCAGC 2 cut(s) 120, 133
MabI ACCWGGT 1 cut(s) 63
MalI GATC 1 cut(s) 131
MbiI CCGCTC 1 cut(s) 88
MboI GATC 1 cut(s) 129
MboII GAAGA 2 cut(s) 88, 164
MhlI GDGCHC 1 cut(s) 58
MnlI CCTC 2 cut(s) 20, 118
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 56, 69
PceI AGGCCT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 110, 148
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 56, 69
PspOMI GGGCCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 54, 55
SatI GCNGC 2 cut(s) 109, 147
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 54, 55
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 58
SetI ASST 3 cut(s) 31, 66, 113
SexAI ACCWGGT 1 cut(s) 63
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 2 cut(s) 23, 88
SspI AATATT 1 cut(s) 99
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 103
TscAI CASTG 1 cut(s) 46
TseI GCWGC 2 cut(s) 108, 146
TspRI CASTG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.