Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Forward (+)

47856291 .. 47857344

Gene Structure 1054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAGGAAATACAGGAATCTGGGATTTGCCAACTGGCATGTATATATGTGGGAAGATGCAAGTTTCCCCCGTATGGTTCATCTGCCAAGTCTCTCAGCATGGTTGCTGATGTCCACAGAACATTATTATATGGTGGCATCTCTTTGTACCCTGGCGACGACAAAAGCCCAAATGGGGAACTACGAGTCCTTTATGAAGTTTTCCCAATGTCATACCTAGTTGAGCAAGCAGGAGGGCAATCTTTTACTGGCAAGAAGCGGGCACTTGATGTGGTCCCAAAGAAGATACATGAGATGTCCCCAGTATTCCTTGGAAGCTATGACGATGTCGAGGAAATTAAACTACTTTATGAGACTTATGACAGGCCGACCTCGAATTCTTCCTCTTCAATTCTGAGGTGGTTTGGTGGCTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009311 GO:0009312 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016051 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0030388 GO:0033993 GO:0034284 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046364 GO:0050308 GO:0050896 GO:0071704 GO:0097305 GO:1901135 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

139

Amino Acids

15.43

Weight (kDa)

6.1

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase_C	PF18913	33 - 117	1.4e-33	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	74, 175
AgsI	TTSAA	1 cut(s)	390
AjnI	CCWGG	1 cut(s)	151
AloI	GAACNNNNNNTCC	2 cut(s)	171, 203
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	96, 347
AoxI	GGCC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	96, 347
BfaI	CTAG	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	47, 147
BmuI	ACTGGG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	151, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 175
Bse1I	ACTGG	3 cut(s)	39, 253, 302
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	151, 310
BseLI	CCNNNNNNNGG	2 cut(s)	74, 175
BseMII	CTCAG	2 cut(s)	109, 386
BseNI	ACTGG	3 cut(s)	39, 253, 302
BseSI	GKGCMC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	367
BslFI	GGGAC	2 cut(s)	260, 283
BslI	CCNNNNNNNGG	2 cut(s)	74, 175
BsmAI	GTCTC	2 cut(s)	96, 347
BsmFI	GGGAC	2 cut(s)	260, 283
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	2 cut(s)	108, 387
BspLI	GGNNCC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	39, 253, 302
BssECI	CCNNGG	2 cut(s)	151, 310
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	228, 261
BstDEI	CTNAG	2 cut(s)	95, 395
BstMAI	GTCTC	2 cut(s)	96, 347
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	228, 261
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	39, 100, 290
CviJI	RGCY	4 cut(s)	168, 318, 367, 411
CviKI_1	RGCY	4 cut(s)	168, 318, 367, 411
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	95, 395
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	3 cut(s)	42, 103, 293
FaqI	GGGAC	2 cut(s)	260, 283
FatI	CATG	3 cut(s)	38, 99, 289
FauI	CCCGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	367
Hin1II	CATG	3 cut(s)	42, 103, 293
HinfI	GANTC	2 cut(s)	17, 186
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	396
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	60
HpyF3I	CTNAG	2 cut(s)	95, 395
Hsp92II	CATG	3 cut(s)	42, 103, 293
LpnPI	CCDG	8 cut(s)	6, 20, 138, 165, 216, 234, 315, 349
LweI	GCATC	2 cut(s)	47, 147
MaeI	CTAG	1 cut(s)	218
MboII	GAAGA	4 cut(s)	66, 295, 372, 378
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	3 cut(s)	336, 376, 390
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	5 cut(s)	227, 325, 382, 390, 394
MseI	TTAA	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
NlaIII	CATG	3 cut(s)	42, 103, 293
NlaIV	GGNNCC	1 cut(s)	276
NspI	RCATGY	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	274
PsyI	GACNNNGTC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	4 cut(s)	219, 320, 374, 401
SfaNI	GCATC	2 cut(s)	47, 147
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	3 cut(s)	336, 376, 390
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	310
TaqI	TCGA	2 cut(s)	330, 374
TasI	AATT	3 cut(s)	336, 376, 390
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TspDTI	ATGAA	3 cut(s)	17, 69, 210
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.