pycom10g01620

Belongs to the FBPase class 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
1699200 .. 1702491
3292 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01620.8

Sequence Viewer

Length: 1020 bp
ATGGATCACGCAGCCGATGCGCACCGGACGGACTTGATGACCATAACGAGGTTCGTGCTGAATGAGCAGTCCAAGCACCCTGAGTCCCGCGGTGACTTCACCATCTTGCTCAATCATATTGTTCTTGGCTGCAAGTTTGTCTGCTCTGCAGTCAACAAGGCTGGTCTGGCCAAACTTATCGGGCTTGCTGGAGAGACCAATGTTCAGGGTGAAGAGCAAAAGAAACTGGATGTTCTTTCAAATGAAGTTTTTGTTAAGGCTCTGGTTAGCAGTGGCAGAACTTCTATTCTTGTTTCAGAGGAAGATGAAGAGGCGATTTTCGTGGAGCCAAAATTGCGTGGAAAGTACTGTGTTGTGTTCGATCCACTGGATGGTTCGTCCAACATTGATTGTGGTGTTTCCATTGGAACGATTTTTGGGATTTATGTGGTTAAAGATGGTGAACCTTCTCTTAAAGATGTCTTGCAACCTGGAAGGAAAATGGTTGCAGCAGGCTACTGCATGTATGGAAGCTCTTGCACGTTCGTGATAAGCACTGGAACTGGAGTTCATGGGTTCACCCTCGATCCTTCTCTCGGGGAGTTCATACTAACTCACCCAGACATCAAGATTCCAAAGAAAGGAAAGATCTATTCGGTGAATGAAGGGAATGCCAAAAATTGGGATGGCCCGACGGCCAAGTATGTGCAAAAGTGCAAGTACCCGGAAGATGGTTCATCCCCGAAGTCTCTAAGATACATTGGAAGCATGGTTGCTGATGTTCATCGGACATTGCTCTATGGCGGTATCTTTTTGTACCCTGCTGATAAGAAGAGCCCAAACGGAAAACTGCGGGTTCTCTACGAAGTCTTCCCAATGTCGTTTTTGTTGGAACAAGCAGGCGGTCAGTCCTTCACTGGCAAGGAACGGGCCCTTGACCTGGTTCCGACCAAGATACACGAGCGCTCTCCGATCTTCCTCGGCAGCTACGACGACGTTGAGGAAATCAAGGCACTCTATGCAGCTGAAGGAAAGCAATGA

Protein Analysis

340

Amino Acids

37.04

Weight (kDa)

6.27

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccB7I CCANNNNNTGG 2 cut(s) 371, 660
AccII CGCG 1 cut(s) 90
AciI CCGC 5 cut(s) 88, 90, 783, 832, 882
AclWI GGATC 3 cut(s) 12, 356, 560
AcoI YGGCCR 2 cut(s) 168, 675
AfaI GTAC 3 cut(s) 347, 701, 797
AfeI AGCGCT 1 cut(s) 944
AfiI CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
AgsI TTSAA 1 cut(s) 240
AjnI CCWGG 2 cut(s) 469, 918
AleI CACNNNNGTG 1 cut(s) 524
AloI GAACNNNNNNTCC 2 cut(s) 531, 563
AluBI AGCT 3 cut(s) 513, 966, 1004
AluI AGCT 3 cut(s) 513, 966, 1004
Alw26I GTCTC 2 cut(s) 188, 732
AlwI GGATC 3 cut(s) 12, 356, 560
Ama87I CYCGRG 1 cut(s) 575
Aor51HI AGCGCT 1 cut(s) 944
AoxI GGCC 4 cut(s) 168, 667, 675, 909
ApaI GGGCCC 1 cut(s) 913
ApeKI GCWGC 5 cut(s) 11, 129, 488, 963, 1001
AspLEI GCGC 2 cut(s) 22, 945
AspS9I GGNCC 3 cut(s) 668, 909, 910
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 7 cut(s) 91, 104, 221, 452, 550, 587, 649
AvaI CYCGRG 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 913
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 2 cut(s) 818, 913
BauI CACGAG 1 cut(s) 938
BbsI GAAGAC 1 cut(s) 841
BbvI GCAGC 5 cut(s) 23, 116, 500, 975, 1013
BccI CCATC 5 cut(s) 110, 365, 431, 659, 704
BceAI ACGGC 1 cut(s) 690
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 2 cut(s) 471, 920
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 2 cut(s) 188, 732
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 946
BglII AGATCT 1 cut(s) 627
BisI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
BlsI GCNGC 5 cut(s) 13, 131, 490, 965, 1003
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 3 cut(s) 471, 704, 920
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 668, 909, 910
BmiI GGNNCC 3 cut(s) 327, 911, 924
BmrFI CCNGG 3 cut(s) 471, 704, 920
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 841
BpmI CTGGAG 2 cut(s) 210, 564
BpuMI CCSGG 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 88, 958
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
Bse1I ACTGG 5 cut(s) 231, 372, 541, 547, 901
Bse3DI GCAATG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 2 cut(s) 471, 920
BseDI CCNNGG 2 cut(s) 88, 958
BseGI GGATG 4 cut(s) 235, 376, 670, 716
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 5 cut(s) 231, 372, 541, 547, 901
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 5 cut(s) 23, 116, 500, 975, 1013
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 170, 669, 677, 911
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 2 cut(s) 25, 704
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 7 cut(s) 48, 371, 575, 620, 660, 710, 919
BsmAI GTCTC 2 cut(s) 188, 732
BsmFI GGGAC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 4 cut(s) 170, 669, 677, 911
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 575
Bsp120I GGGCCC 1 cut(s) 909
Bsp1286I GDGCHC 2 cut(s) 818, 913
Bsp143I GATC 5 cut(s) 4, 361, 565, 627, 951
BspACI CCGC 5 cut(s) 88, 90, 783, 832, 882
BspANI GGCC 4 cut(s) 170, 669, 677, 911
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 327, 911, 924
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 3 cut(s) 12, 356, 560
BspQI GCTCTTC 2 cut(s) 207, 806
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 770
BsrI ACTGG 5 cut(s) 231, 372, 541, 547, 901
BssECI CCNNGG 2 cut(s) 88, 958
BssMI GATC 5 cut(s) 4, 361, 565, 627, 951
BssSI CACGAG 1 cut(s) 938
Bst2BI CACGAG 1 cut(s) 938
Bst2UI CCWGG 2 cut(s) 471, 920
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 3 cut(s) 207, 303, 806
BstAPI GCANNNNNTGC 2 cut(s) 17, 998
BstC8I GCNNGC 3 cut(s) 186, 493, 880
BstDEI CTNAG 2 cut(s) 81, 731
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 4 cut(s) 235, 376, 670, 716
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 946
BstHHI GCGC 2 cut(s) 22, 945
BstKTI GATC 5 cut(s) 7, 364, 568, 630, 954
BstMAI GTCTC 2 cut(s) 188, 732
BstMBI GATC 5 cut(s) 4, 361, 565, 627, 951
BstMWI GCNNNNNNNGC 6 cut(s) 17, 64, 73, 167, 334, 998
BstNI CCWGG 2 cut(s) 471, 920
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 3 cut(s) 469, 702, 918
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 5 cut(s) 23, 116, 500, 975, 1013
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 1 cut(s) 627
BstYI RGATCY 1 cut(s) 627
BsuRI GGCC 4 cut(s) 170, 669, 677, 911
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 4 cut(s) 235, 376, 670, 716
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 4 cut(s) 277, 365, 534, 894
Cac8I GCNNGC 3 cut(s) 186, 493, 880
CfoI GCGC 2 cut(s) 22, 945
Cfr13I GGNCC 3 cut(s) 668, 909, 910
Cfr42I CCGCGG 1 cut(s) 91
CsiI ACCWGGT 1 cut(s) 918
Csp6I GTAC 3 cut(s) 346, 700, 796
CviAII CATG 3 cut(s) 502, 551, 748
CviQI GTAC 3 cut(s) 346, 700, 796
DdeI CTNAG 2 cut(s) 81, 731
DpnI GATC 5 cut(s) 6, 363, 567, 629, 953
DpnII GATC 5 cut(s) 4, 361, 565, 627, 951
EaeI YGGCCR 2 cut(s) 168, 675
Eam1104I CTCTTC 3 cut(s) 207, 303, 806
EarI CTCTTC 3 cut(s) 207, 303, 806
Eco24I GRGCYC 2 cut(s) 818, 913
Eco31I GGTCTC 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 944
Eco88I CYCGRG 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 910
EcoRII CCWGG 2 cut(s) 469, 918
EcoT38I GRGCYC 2 cut(s) 818, 913
FaeI CATG 3 cut(s) 505, 554, 751
FaqI GGGAC 1 cut(s) 70
FatI CATG 3 cut(s) 501, 550, 747
FauI CCCGC 2 cut(s) 95, 825
Fnu4HI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
FokI GGATG 4 cut(s) 242, 383, 677, 703
FriOI GRGCYC 2 cut(s) 818, 913
Fsp4HI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
FspAI RTGCGCAY 1 cut(s) 21
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 2 cut(s) 21, 944
GluI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
GsuI CTGGAG 2 cut(s) 210, 564
HaeII RGCGCY 1 cut(s) 946
HaeIII GGCC 4 cut(s) 170, 669, 677, 911
HapII CCGG 2 cut(s) 25, 704
HhaI GCGC 2 cut(s) 22, 945
Hin1II CATG 3 cut(s) 505, 554, 751
Hin6I GCGC 2 cut(s) 20, 943
HinP1I GCGC 2 cut(s) 20, 943
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 83, 610
HpaII CCGG 2 cut(s) 25, 704
HphI GGTGA 7 cut(s) 91, 104, 221, 452, 550, 587, 649
Hpy166II GTNNAC 3 cut(s) 154, 443, 558
Hpy188I TCNGA 4 cut(s) 298, 768, 927, 951
Hpy188III TCNNGA 2 cut(s) 526, 607
Hpy8I GTNNAC 3 cut(s) 154, 443, 558
Hpy99I CGWCG 3 cut(s) 676, 974, 977
HpyAV CCTTC 6 cut(s) 456, 468, 579, 638, 901, 1001
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 2 cut(s) 521, 975
HpyCH4V TGCA 9 cut(s) 132, 149, 466, 488, 501, 519, 688, 696, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 64, 73, 167, 334, 998
HpyF3I CTNAG 2 cut(s) 81, 731
HpySE526I ACGT 2 cut(s) 521, 975
Hsp92II CATG 3 cut(s) 505, 554, 751
HspAI GCGC 2 cut(s) 20, 943
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 5 cut(s) 4, 361, 565, 627, 951
LguI GCTCTTC 2 cut(s) 207, 806
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 5 cut(s) 23, 116, 500, 975, 1013
LweI GCATC 1 cut(s) 7
MabI ACCWGGT 1 cut(s) 918
MaeII ACGT 2 cut(s) 521, 975
MaeIII GTNAC 1 cut(s) 92
MalI GATC 5 cut(s) 6, 363, 567, 629, 953
MboI GATC 5 cut(s) 4, 361, 565, 627, 951
MboII GAAGA 7 cut(s) 224, 314, 320, 719, 823, 841, 946
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 2 cut(s) 818, 913
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 2 cut(s) 332, 658
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 3 cut(s) 405, 849, 950
MnlI CCTC 6 cut(s) 42, 292, 304, 572, 968, 973
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 255, 432, 453
MslI CAYNNNNRTG 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 2 cut(s) 90, 1004
MspI CCGG 2 cut(s) 25, 704
MspR9I CCNGG 3 cut(s) 471, 704, 920
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 2 cut(s) 471, 920
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 6 cut(s) 17, 64, 73, 167, 334, 998
NciI CCSGG 1 cut(s) 704
NdeII GATC 5 cut(s) 4, 361, 565, 627, 951
NlaIII CATG 3 cut(s) 505, 554, 751
NlaIV GGNNCC 3 cut(s) 327, 911, 924
NmeAIII GCCGAG 1 cut(s) 939
NmuCI GTSAC 1 cut(s) 92
NsbI TGCGCA 1 cut(s) 21
NspI RCATGY 1 cut(s) 505
OliI CACNNNNGTG 1 cut(s) 524
PciSI GCTCTTC 2 cut(s) 207, 806
PcsI WCGNNNNNNNCGW 1 cut(s) 966
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 610
PflMI CCANNNNNTGG 2 cut(s) 371, 660
PkrI GCNGC 5 cut(s) 13, 131, 490, 965, 1003
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 469, 918
PspGI CCWGG 2 cut(s) 469, 918
PspN4I GGNNCC 3 cut(s) 327, 911, 924
PspOMI GGGCCC 1 cut(s) 909
PspPI GGNCC 3 cut(s) 668, 909, 910
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 627
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 3 cut(s) 347, 701, 797
RsaNI GTAC 3 cut(s) 346, 700, 796
RseI CAYNNNNRTG 1 cut(s) 524
SacII CCGCGG 1 cut(s) 91
SapI GCTCTTC 2 cut(s) 207, 806
SaqAI TTAA 3 cut(s) 255, 432, 453
SatI GCNGC 5 cut(s) 12, 130, 489, 964, 1002
Sau3AI GATC 5 cut(s) 4, 361, 565, 627, 951
Sau96I GGNCC 3 cut(s) 668, 909, 910
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 3 cut(s) 471, 704, 920
SduI GDGCHC 2 cut(s) 818, 913
SetI ASST 9 cut(s) 53, 448, 472, 515, 524, 921, 968, 978, 1006
SexAI ACCWGGT 1 cut(s) 918
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 2 cut(s) 332, 658
SsiI CCGC 5 cut(s) 88, 90, 783, 832, 882
StyD4I CCNGG 3 cut(s) 469, 702, 918
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 2 cut(s) 524, 978
TaqI TCGA 2 cut(s) 360, 564
TasI AATT 2 cut(s) 332, 658
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 610
Tru1I TTAA 3 cut(s) 255, 432, 453
Tru9I TTAA 3 cut(s) 255, 432, 453
TscAI CASTG 4 cut(s) 277, 372, 541, 901
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 5 cut(s) 11, 129, 488, 963, 1001
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 7 cut(s) 258, 321, 539, 574, 657, 705, 752
TspGWI ACGGA 2 cut(s) 44, 837
TspRI CASTG 4 cut(s) 277, 372, 541, 901
Van91I CCANNNNNTGG 2 cut(s) 371, 660
XceI RCATGY 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.