Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005043.1

Orthogroup ID

OG0002794

Physical Location & Seq

Genomic Coordinates Reverse (-)

9177 .. 12598

Gene Structure 3422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005043.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atggatcatgctgctgaagctcatagaactgacctgatgaccatcactcgttttgttctgaatgagcagtccaagcatcctgaggcacgcggtgatttcaccatcttgctcaaccacatagttctcggctgcaaatttgtctgctccgctgttagcaaggccggccttgcaaagctatttggacttgctggggagacaaatgttcagggtgaagaacaaaagaaattggatgtgctttcaaatgaagttttcatcaaagcattaattagcagtggtcgcacttgcattcttgtttccgaggaggatgaagaggctacatttgtggaaccatcaaagcgtggaaggtacattgttgtttttgatccattggatggatcctccaacatcgactgtggtgtttccattggaactatctttgggatttacatggtgaaagacaaggaaaatccaactcttgatgatgtattacaccctgggagtaatatggtagctgctggttattgcatgtatggaagctcttgcatgctggtgcttagtactggaaatggagtcaatggcttcacacttgatccatcccttggggaatttatattaacccaccctaatattaagattccaaacaagggcaatatttactcagtgaatgaaggaaatgcaaaaaactgggacaagcaaactgccgaatatgtgggaaaatgcaagtttcccacagatggttcatctgccaagtctctcagatacattggaagcatggttgctgatgtccacagaacattattatatggtggcatctttttgtaccctggcgacaagaaaagcccaaatgggaaactacgagtcctttatgaagttttcccaatgtcctatctagttgagcaagcaggagggcaatcttttactggcaaaaagcgggcacttgatgtggttccagagaagatacatgagaggtccccaatatttcttggaagctatgacgatgtcgaggaaattaaacgactttataaggctacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

337

Amino Acids

36.95

Weight (kDa)

6.1

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43670
fragaria_vesca	FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890 FvH4_2g13890
malus_domestica	MD05G1023900.v1.1 MD10G1024400.v1.1 MD15G1416100.v1.1
prunus_persica	Prupe.8G028300_v2.0.a1 Prupe.8G028300_v2.0.a1
pyrus_communis	pycom05g01530 pycom10g01620
rosa_chinensis	RchiOBHm_Chr6g0275641 RchiOBHm_Chr7g0225171 RchiOBHm_Chr7g0225291 RchiOBHm_Chr7g0225311
rosa_laevigata	RLG00000001840 RLG00000013451
rosa_multiflora	Rmu_sc0002011.1_g000002 Rmu_sc0005043.1_g000001 Rmu_sc0010532.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234160 Rroxscaffold_7G00193110
rosa_rugosa	Rorug06G0094600 Rorug06G0094700 Rorug07G0227700 Rorug07G0227700
rosa_samantha	Rh6AG207100 Rh6BG209800 Rh6CG213000 Rh6DG202900 Rh7AG374800 Rh7BG362700 Rh7CG394500
rosa_wichuraiana	Rw0G021340 Rw6G017950 Rw7G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
AccB7I	CCANNNNNTGG	2 cut(s)	371, 578
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	90, 147, 910
AclWI	GGATC	5 cut(s)	12, 356, 369, 382, 563
AcsI	RAATTY	2 cut(s)	134, 584
AcuI	CTGAAG	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	347, 538, 800
AfiI	CCNNNNNNNGG	4 cut(s)	371, 578, 623, 713
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	472, 802
AluBI	AGCT	5 cut(s)	20, 175, 491, 516, 969
AluI	AGCT	5 cut(s)	20, 175, 491, 516, 969
Alw26I	GTCTC	2 cut(s)	188, 735
AlwI	GGATC	5 cut(s)	12, 356, 369, 382, 563
AoxI	GGCC	2 cut(s)	159, 163
ApeKI	GCWGC	3 cut(s)	11, 129, 491
ApoI	RAATTY	2 cut(s)	134, 584
AseI	ATTAAT	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	948
AsuHPI	GGTGA	4 cut(s)	91, 104, 221, 442
AvaII	GGWCC	1 cut(s)	948
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	916
BamHI	GGATCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	116, 478
BccI	CCATC	6 cut(s)	50, 110, 337, 365, 580, 707
BciT130I	CCWGG	2 cut(s)	474, 804
BcoDI	GTCTC	2 cut(s)	188, 735
BfaI	CTAG	1 cut(s)	869
BisI	GCNGC	3 cut(s)	12, 130, 492
BlsI	GCNGC	3 cut(s)	13, 131, 493
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	2 cut(s)	474, 804
Bme18I	GGWCC	1 cut(s)	948
BmgT120I	GGNCC	1 cut(s)	948
BmiI	GGNNCC	4 cut(s)	327, 376, 927, 950
BmrFI	CCNGG	2 cut(s)	474, 804
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	2 cut(s)	85, 798
BmuI	ACTGGG	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	5 cut(s)	297, 472, 473, 577, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	371, 578, 623, 713
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	544, 668, 904
Bse21I	CCTNAGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	474, 804
BseDI	CCNNGG	5 cut(s)	297, 472, 473, 577, 802
BseGI	GGATG	5 cut(s)	76, 235, 310, 376, 572
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	4 cut(s)	371, 578, 623, 713
BseMII	CTCAG	3 cut(s)	72, 651, 748
BseNI	ACTGG	3 cut(s)	544, 668, 904
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	2 cut(s)	116, 478
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	161, 165
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	680, 934
BslI	CCNNNNNNNGG	4 cut(s)	371, 578, 623, 713
BsmAI	GTCTC	2 cut(s)	188, 735
BsmFI	GGGAC	2 cut(s)	680, 934
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	161, 165
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp143I	GATC	4 cut(s)	4, 361, 374, 568
BspACI	CCGC	3 cut(s)	90, 147, 910
BspANI	GGCC	2 cut(s)	161, 165
BspCNI	CTCAG	3 cut(s)	73, 650, 747
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	327, 376, 927, 950
BspPI	GGATC	5 cut(s)	12, 356, 369, 382, 563
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	544, 668, 904
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	5 cut(s)	297, 472, 473, 577, 802
BssMI	GATC	4 cut(s)	4, 361, 374, 568
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	474, 804
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	5 cut(s)	88, 163, 524, 879, 912
BstDEI	CTNAG	4 cut(s)	81, 533, 637, 734
BstF5I	GGATG	5 cut(s)	76, 235, 310, 376, 572
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	4 cut(s)	7, 364, 377, 571
BstMAI	GTCTC	2 cut(s)	188, 735
BstMBI	GATC	4 cut(s)	4, 361, 374, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
BstNI	CCWGG	2 cut(s)	474, 804
BstNSI	RCATGY	2 cut(s)	508, 526
BstSCI	CCNGG	2 cut(s)	472, 802
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	116, 478
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	161, 165
BtsCI	GGATG	5 cut(s)	76, 235, 310, 376, 572
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	277, 645
Cac8I	GCNNGC	5 cut(s)	88, 163, 524, 879, 912
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	948
Csp6I	GTAC	3 cut(s)	346, 537, 799
CviAII	CATG	6 cut(s)	8, 427, 505, 523, 751, 941
CviQI	GTAC	3 cut(s)	346, 537, 799
DdeI	CTNAG	4 cut(s)	81, 533, 637, 734
DpnI	GATC	4 cut(s)	6, 363, 376, 570
DpnII	GATC	4 cut(s)	4, 361, 374, 568
DraIII	CACNNNGTG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	948
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	948
EcoRII	CCWGG	2 cut(s)	472, 802
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	6 cut(s)	11, 430, 508, 526, 754, 944
FaqI	GGGAC	2 cut(s)	680, 934
FatI	CATG	6 cut(s)	7, 426, 504, 522, 750, 940
FauI	CCCGC	1 cut(s)	903
Fnu4HI	GCNGC	3 cut(s)	12, 130, 492
FokI	GGATG	5 cut(s)	63, 242, 317, 383, 559
FseI	GGCCGGCC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	12, 130, 492
FspBI	CTAG	1 cut(s)	869
GluI	GCNGC	3 cut(s)	12, 130, 492
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	161, 165
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	6 cut(s)	11, 430, 508, 526, 754, 944
HinfI	GANTC	3 cut(s)	549, 613, 837
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	4 cut(s)	91, 104, 221, 442
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	3 cut(s)	60, 298, 737
Hpy188III	TCNNGA	3 cut(s)	80, 455, 929
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	2 cut(s)	336, 641
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	7 cut(s)	132, 170, 285, 504, 522, 656, 699
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
HpyF3I	CTNAG	4 cut(s)	81, 533, 637, 734
Hsp92II	CATG	6 cut(s)	11, 430, 508, 526, 754, 944
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	4, 361, 374, 568
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	2 cut(s)	116, 478
LweI	GCATC	2 cut(s)	85, 798
MaeI	CTAG	1 cut(s)	869
MalI	GATC	4 cut(s)	6, 363, 376, 570
MboI	GATC	4 cut(s)	4, 361, 374, 568
MboII	GAAGA	3 cut(s)	224, 320, 946
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	5 cut(s)	134, 224, 264, 584, 987
MlyI	GAGTC	2 cut(s)	558, 846
MmeI	TCCRAC	2 cut(s)	405, 473
MnlI	CCTC	8 cut(s)	76, 292, 295, 304, 388, 878, 939, 976
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	5 cut(s)	263, 593, 609, 990, 1012
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	474, 804
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	474, 804
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	17, 73, 162, 167, 276
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	4 cut(s)	4, 361, 374, 568
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	6 cut(s)	11, 430, 508, 526, 754, 944
NlaIV	GGNNCC	4 cut(s)	327, 376, 927, 950
NmeAIII	GCCGAG	1 cut(s)	105
NspI	RCATGY	2 cut(s)	508, 526
PaeI	GCATGC	1 cut(s)	526
PasI	CCCWGGG	1 cut(s)	473
PctI	GAATGC	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	977
PflMI	CCANNNNNTGG	2 cut(s)	371, 578
PkrI	GCNGC	3 cut(s)	13, 131, 493
PleI	GAGTC	2 cut(s)	557, 845
PpsI	GAGTC	2 cut(s)	557, 845
PpuMI	RGGWCCY	1 cut(s)	948
PshBI	ATTAAT	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	948
Psp6I	CCWGG	2 cut(s)	472, 802
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	472, 802
PspN4I	GGNNCC	4 cut(s)	327, 376, 927, 950
PspPI	GGNCC	1 cut(s)	948
PspPPI	RGGWCCY	1 cut(s)	948
PsuI	RGATCY	1 cut(s)	374
PsyI	GACNNNGTC	1 cut(s)	977
RigI	GGCCGGCC	1 cut(s)	165
RsaI	GTAC	3 cut(s)	347, 538, 800
RsaNI	GTAC	3 cut(s)	346, 537, 799
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	263, 593, 609, 990, 1012
SatI	GCNGC	3 cut(s)	12, 130, 492
Sau3AI	GATC	4 cut(s)	4, 361, 374, 568
Sau96I	GGNCC	1 cut(s)	948
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	2 cut(s)	558, 846
ScrFI	CCNGG	2 cut(s)	474, 804
SduI	GDGCHC	1 cut(s)	916
SetI	ASST	8 cut(s)	22, 36, 177, 347, 493, 518, 950, 971
SfaNI	GCATC	2 cut(s)	85, 798
SinI	GGWCC	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	527
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	5 cut(s)	134, 224, 264, 584, 987
SsiI	CCGC	3 cut(s)	90, 147, 910
SspI	AATATT	3 cut(s)	607, 631, 957
SspMI	CTAG	1 cut(s)	869
StyD4I	CCNGG	2 cut(s)	472, 802
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	387, 981
TasI	AATT	5 cut(s)	134, 224, 264, 584, 987
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	5 cut(s)	263, 593, 609, 990, 1012
Tru9I	TTAA	5 cut(s)	263, 593, 609, 990, 1012
TscAI	CASTG	2 cut(s)	277, 645
TseI	GCWGC	3 cut(s)	11, 129, 491
TspDTI	ATGAA	6 cut(s)	241, 258, 321, 660, 708, 861
TspRI	CASTG	2 cut(s)	277, 645
Tth111I	GACNNNGTC	1 cut(s)	977
Van91I	CCANNNNNTGG	2 cut(s)	371, 578
VpaK11BI	GGWCC	1 cut(s)	948
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	2 cut(s)	134, 584
XceI	RCATGY	2 cut(s)	508, 526
XspI	CTAG	1 cut(s)	869
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.